Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 0.0e+00 1305.8 665 100.0
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 4.1e-154 549.3 676 54.0
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 4.1e-146 522.7 752 47.9
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.7e-145 520.0 751 47.9
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 1.4e-138 497.7 718 47.5
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 1.8e-125 454.1 742 43.3
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 7.6e-124 448.7 769 42.7
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 7.6e-124 448.7 769 42.7
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 3.2e-122 443.4 726 42.7
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 3.3e-119 433.3 769 42.0
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 2.6e-116 423.7 737 41.2
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 1.9e-114 417.5 746 41.4
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 6.0e-113 412.5 724 40.5
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 1.0e-112 411.8 778 40.2
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 6.6e-112 409.1 746 40.9
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 2.1e-110 404.1 699 43.2
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 2.8e-110 403.7 728 40.2
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 3.1e-109 400.2 762 39.6
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 1.2e-108 398.3 659 42.6
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.5e-108 397.9 737 40.6
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.5e-108 397.9 745 40.3
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.5e-108 397.9 724 42.3
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.3e-107 394.8 774 40.6
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.7e-107 394.4 692 41.6
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 3.8e-107 393.3 729 40.1
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.9e-107 392.9 712 40.7
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 8.4e-107 392.1 729 40.1
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 8.4e-107 392.1 702 41.3
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.4e-106 391.3 713 40.7
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 3.2e-106 390.2 680 41.8
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 7.1e-106 389.0 722 40.3
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.2e-105 388.3 663 41.9
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 2.1e-105 387.5 706 40.7
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 2.7e-105 387.1 789 38.5
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.7e-105 387.1 724 39.6
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 3.0e-104 383.6 724 40.3
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 2.5e-103 380.6 720 39.7
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.3e-103 380.2 738 39.0
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 4.3e-103 379.8 729 37.9
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 5.6e-103 379.4 680 40.3
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 7.4e-103 379.0 729 39.9
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 7.4e-103 379.0 716 39.7
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 7.4e-103 379.0 750 40.1
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 9.6e-103 378.6 682 41.6
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 2.8e-102 377.1 739 38.2
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 3.7e-102 376.7 744 39.2
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 6.2e-102 375.9 739 38.0
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 5.3e-101 372.9 748 38.2
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 6.9e-101 372.5 723 38.7
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 9.0e-101 372.1 715 40.0
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 4.5e-100 369.8 725 39.4
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 4.5e-100 369.8 674 41.2
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 7.6e-100 369.0 722 38.4
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 3.8e-99 366.7 714 38.7
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 8.4e-99 365.5 709 39.6
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.9e-98 364.4 708 38.3
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 5.5e-98 362.8 674 39.9
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 7.1e-98 362.5 735 37.4
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 9.3e-98 362.1 714 38.8
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.5e-97 360.1 715 38.5
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 3.5e-97 360.1 738 38.2
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 4.6e-97 359.8 719 40.5
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 6.0e-97 359.4 666 39.5
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 7.9e-97 359.0 740 39.1
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.8e-96 357.8 730 38.5
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.8e-96 357.8 706 38.7
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 1.8e-96 357.8 706 38.8
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 1.8e-96 357.8 730 38.8
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.0e-96 357.1 697 38.6
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 3.0e-96 357.1 678 39.2
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 3.9e-96 356.7 668 39.7
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 8.7e-96 355.5 733 39.4
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 9.6e-95 352.1 711 39.0
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 6.2e-94 349.4 666 39.0
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 3.1e-93 347.1 762 36.6
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 5.3e-93 346.3 723 38.7
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 5.3e-93 346.3 682 39.6
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 7.6e-92 342.4 679 38.0
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 6.5e-91 339.3 753 37.2
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 2.5e-87 327.4 681 37.6
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 2.8e-86 323.9 635 38.0
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 1.1e-85 322.0 751 36.2
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.5e-84 316.6 739 35.2
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 7.7e-84 315.8 749 35.4
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 1.3e-83 315.1 749 35.4
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 1.7e-83 314.7 700 35.6
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.9e-82 311.2 732 35.7
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 2.7e-81 307.4 645 37.2
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 3.3e-79 300.4 527 41.9
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 1.7e-78 298.1 684 36.3
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 8.2e-78 295.8 673 35.1
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 2.4e-77 294.3 688 34.2
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 3.1e-77 293.9 676 35.5
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 5.3e-77 293.1 739 35.0
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 9.1e-77 292.4 637 35.5
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 2.6e-76 290.8 655 35.0
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 4.5e-76 290.0 642 35.0
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 7.7e-76 289.3 683 35.3
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 1.3e-75 288.5 666 34.7
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 1.3e-75 288.5 666 34.7
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 1.7e-75 288.1 688 34.0
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 2.2e-75 287.7 599 38.4
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 7.2e-74 282.7 679 34.0
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 2.7e-73 280.8 635 36.9
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 5.7e-71 273.1 295 51.9
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 2.2e-70 271.2 601 36.9
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 3.7e-70 270.4 582 36.1
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 1.1e-69 268.9 725 33.7
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 2.4e-69 267.7 521 42.6
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 8.5e-59 232.6 262 51.9
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 5.7e-55 219.9 334 43.7
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 4.1e-53 213.8 258 45.7
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 4.5e-52 210.3 484 36.6
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 1.9e-50 204.9 457 38.9
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 1.7e-43 181.8 156 61.5
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 5.0e-43 180.3 454 35.0
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.4e-40 172.2 627 29.7
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 1.8e-40 171.8 455 35.4
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 5.2e-40 170.2 164 54.3
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 7.5e-39 166.4 402 36.8
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 8.3e-38 162.9 288 35.8
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 8.3e-38 162.9 307 35.2
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 4.6e-36 157.1 145 55.2
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 5.2e-32 143.7 127 55.9
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 4.9e-30 137.1 133 54.1
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 8.3e-30 136.3 394 33.2
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 3.0e-27 127.9 406 27.6
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 1.8e-24 118.6 156 41.0
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 5.2e-24 117.1 438 30.8
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 8.9e-24 116.3 186 42.5
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.6e-23 114.8 117 54.7
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 1.2e-20 105.9 74 62.2
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 3.5e-20 104.4 106 49.1
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 3.3e-18 97.8 85 58.8
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 3.7e-14 84.3 119 47.1
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.1e-12 78.6 74 56.8
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 2.3e-11 75.1 133 40.6
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 3.0e-11 74.7 72 51.4
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 1.9e-10 72.0 61 62.3
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 5.6e-10 70.5 167 35.9
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 1.2e-09 69.3 88 42.0
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 2.8e-09 68.2 167 34.7
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 8.1e-09 66.6 113 38.9
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 8.1e-09 66.6 65 49.2
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.4e-08 65.9 119 34.5
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 3.4e-07 61.2 42 61.9
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 3.4e-07 61.2 51 54.9
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 4.9e-06 57.4 44 63.6


User provided reference genes

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