Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 5.3e-137 491.1 264 100.0
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 6.7e-132 474.2 264 97.7
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 6.5e-119 431.0 264 87.9
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 2.5e-118 429.1 264 86.4
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 2.7e-117 425.6 264 85.6
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 3.6e-117 425.2 264 84.8
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 7.9e-117 424.1 264 87.1
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 6.7e-116 421.0 264 84.8
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.1e-115 420.2 264 85.6
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 1.5e-115 419.9 264 86.0
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 2.0e-115 419.5 264 86.4
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 3.3e-115 418.7 264 84.5
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 5.7e-115 417.9 264 86.0
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 7.4e-115 417.5 264 84.1
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 9.7e-115 417.2 264 86.0
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.7e-114 416.4 264 84.1
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.7e-114 416.4 264 84.1
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.7e-114 416.4 264 84.1
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.2e-114 416.0 264 84.8
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.8e-114 415.6 264 84.1
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.8e-114 415.6 264 85.2
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 2.8e-114 415.6 264 84.1
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.7e-114 415.2 264 84.1
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 4.8e-114 414.8 264 84.5
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 4.8e-114 414.8 264 83.0
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 6.3e-114 414.5 264 83.3
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 6.3e-114 414.5 264 85.2
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 6.3e-114 414.5 264 84.8
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 8.2e-114 414.1 264 85.2
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 8.2e-114 414.1 264 84.1
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.2e-114 414.1 264 85.2
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 8.2e-114 414.1 264 84.5
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.1e-113 413.7 264 83.7
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.8e-113 412.9 264 83.3
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.8e-113 412.9 264 83.3
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.8e-113 412.9 264 83.3
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.8e-113 412.9 264 83.3
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.8e-113 412.9 264 83.3
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 2.4e-113 412.5 264 83.3
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 2.4e-113 412.5 263 82.9
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.1e-113 412.1 264 82.6
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 4.1e-113 411.8 264 83.3
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 5.3e-113 411.4 264 83.0
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 6.9e-113 411.0 264 82.6
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 6.9e-113 411.0 264 85.2
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 9.1e-113 410.6 264 83.0
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.2e-112 410.2 264 81.8
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.2e-112 410.2 264 83.3
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.5e-112 409.8 264 84.8
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 2.0e-112 409.5 264 81.4
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.0e-112 409.5 264 84.8
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 2.6e-112 409.1 264 81.8
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 2.6e-112 409.1 264 83.0
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 5.9e-112 407.9 264 83.0
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 5.9e-112 407.9 264 83.0
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 5.9e-112 407.9 264 82.6
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 5.9e-112 407.9 264 83.0
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 7.7e-112 407.5 264 81.1
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 7.7e-112 407.5 264 82.6
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.0e-111 407.1 264 81.1
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.0e-111 407.1 264 81.8
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.0e-111 407.1 264 82.2
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.3e-111 406.8 264 81.4
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 1.7e-111 406.4 261 82.8
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.7e-111 406.4 264 81.4
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 2.2e-111 406.0 264 81.1
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.8e-111 405.2 264 82.6
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 6.5e-111 404.4 264 81.8
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 8.5e-111 404.1 264 82.6
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.4e-110 403.3 264 82.2
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.4e-110 403.3 264 80.7
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.9e-110 402.9 264 79.9
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.9e-110 402.9 264 80.3
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 7.2e-110 401.0 264 81.4
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.2e-109 400.2 264 80.3
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.6e-109 399.8 264 80.3
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 3.6e-109 398.7 264 80.3
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 3.6e-109 398.7 264 81.1
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 3.6e-109 398.7 264 80.3
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 3.6e-109 398.7 264 80.3
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 4.7e-109 398.3 264 80.7
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 6.1e-109 397.9 265 80.4
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.4e-108 396.7 264 80.7
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 6.7e-108 394.4 264 78.0
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.1e-107 393.7 252 81.3
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.5e-107 393.3 264 79.9
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.5e-107 393.3 264 79.9
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.5e-107 393.3 264 79.9
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.3e-107 392.1 264 79.9
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 4.4e-107 391.7 264 77.3
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 5.7e-107 391.3 264 78.0
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 7.4e-107 391.0 264 79.9
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.7e-106 389.8 264 78.4
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 1.7e-106 389.8 264 79.9
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 1.7e-106 389.8 264 79.9
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 1.7e-106 389.8 249 83.1
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 2.2e-106 389.4 264 79.9
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 3.7e-106 388.7 264 79.5
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 3.7e-106 388.7 264 79.9
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 4.8e-106 388.3 264 79.5
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 4.8e-106 388.3 264 79.5
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 4.8e-106 388.3 264 79.5
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 4.8e-106 388.3 264 79.5
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 6.3e-106 387.9 264 78.8
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 6.3e-106 387.9 249 82.7
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 1.4e-105 386.7 264 79.2
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.8e-105 386.3 264 78.4
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 2.4e-105 386.0 246 82.5
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 2.4e-105 386.0 264 79.2
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 2.4e-105 386.0 264 79.2
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 2.4e-105 386.0 264 79.2
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 2.4e-105 386.0 264 79.2
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 2.4e-105 386.0 264 78.8
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 2.4e-105 386.0 264 78.8
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 2.4e-105 386.0 264 78.8
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 3.1e-105 385.6 264 77.7
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 9.1e-105 384.0 264 78.8
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 9.1e-105 384.0 271 76.0
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 4.5e-104 381.7 264 78.8
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 4.5e-104 381.7 240 84.2
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 5.9e-104 381.3 264 78.4
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.7e-103 379.8 264 76.5
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 2.2e-103 379.4 264 78.0
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 3.8e-103 378.6 264 75.8
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 4.2e-102 375.2 264 77.3
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 4.2e-102 375.2 271 73.4
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 7.2e-102 374.4 264 77.7
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 6.1e-101 371.3 264 75.8
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 8.8e-100 367.5 264 75.4
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 1.1e-97 360.5 265 74.3
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 1.8e-97 359.8 249 76.7
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.5e-96 355.5 250 75.2
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 4.5e-96 355.1 218 84.4
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.2e-94 349.0 264 73.5
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 7.2e-94 347.8 210 85.7
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 9.4e-94 347.4 264 73.9
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.4e-92 343.6 234 77.4
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.5e-91 340.1 242 76.9
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.4e-91 338.6 264 67.4
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 4.4e-91 338.6 220 76.8
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 9.8e-91 337.4 227 75.8
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.3e-90 337.0 215 84.2
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 9.1e-89 330.9 250 70.0
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 1.1e-86 323.9 265 67.5
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.8e-84 316.6 264 69.7
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 5.2e-84 315.1 268 64.6
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 5.0e-79 298.5 241 65.6
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.8e-77 292.7 229 64.6
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 8.9e-76 287.7 251 65.7
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 9.8e-75 284.3 208 69.2
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.2e-74 283.1 251 65.7
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 2.9e-74 282.7 264 62.1
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 4.6e-72 275.4 205 72.2
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 5.6e-70 268.5 249 61.4
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 3.1e-68 262.7 271 55.7
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 2.2e-66 256.5 211 63.5
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 5.4e-65 251.9 264 59.8
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.5e-56 222.6 236 58.9
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 9.5e-54 214.5 246 48.8
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 3.6e-53 212.6 138 81.2
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 5.2e-52 208.8 249 49.4
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 5.2e-52 208.8 131 81.7
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 3.5e-48 196.1 180 62.8
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 4.6e-48 195.7 121 84.3
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.0e-39 167.9 119 76.5
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 3.2e-33 146.4 142 62.0
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.2e-32 144.4 192 46.9
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 2.0e-27 127.1 97 70.1
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.3e-23 114.4 69 84.1


User provided reference genes

Program Settings