Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.5e-122 443.0 234 100.0
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 3.1e-104 382.1 226 87.6
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 1.7e-94 349.7 237 73.8
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 2.9e-94 349.0 236 76.3
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 6.9e-88 327.8 238 68.1
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 3.4e-87 325.5 238 72.7
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 2.2e-86 322.8 238 66.4
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.8e-86 322.0 236 72.5
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 3.2e-85 318.9 237 67.5
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 7.1e-85 317.8 243 65.4
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 2.1e-84 316.2 237 70.5
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 3.5e-84 315.5 237 70.0
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 7.8e-84 314.3 237 69.2
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.3e-83 313.5 237 71.3
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 2.3e-83 312.8 237 70.9
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 3.0e-83 312.4 238 68.9
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 3.0e-83 312.4 237 70.5
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.9e-83 312.0 237 70.9
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 3.9e-83 312.0 237 66.7
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 3.9e-83 312.0 251 62.5
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 5.1e-83 311.6 236 69.5
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 6.6e-83 311.2 227 71.4
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 8.7e-83 310.8 248 63.7
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.5e-82 309.3 236 71.2
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 1.3e-81 307.0 237 68.8
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 1.3e-81 307.0 237 64.1
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 8.1e-81 304.3 239 69.9
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.8e-80 303.1 228 67.5
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.8e-80 303.1 237 69.6
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.2e-79 300.4 242 62.8
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 5.8e-79 298.1 230 70.4
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 5.8e-79 298.1 227 66.1
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 7.6e-79 297.7 241 61.4
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 9.9e-79 297.4 230 65.2
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.7e-78 296.6 224 64.3
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.9e-78 295.8 235 66.8
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 2.9e-78 295.8 228 65.4
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 2.9e-78 295.8 237 64.1
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.4e-77 293.5 231 70.6
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 1.4e-77 293.5 235 67.2
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 7.1e-77 291.2 237 63.3
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 2.1e-76 289.7 237 64.6
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 2.7e-76 289.3 234 60.3
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 2.7e-76 289.3 234 60.3
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 6.0e-76 288.1 236 58.5
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 6.0e-76 288.1 228 66.2
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 7.9e-76 287.7 229 60.3
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.9e-76 287.7 227 68.3
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.0e-75 287.3 230 64.3
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.0e-75 287.3 233 60.9
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.3e-75 287.0 239 64.9
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.3e-75 287.0 222 61.3
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.3e-75 287.0 235 59.6
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.3e-75 287.0 237 67.5
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 2.3e-75 286.2 234 64.1
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 2.3e-75 286.2 229 58.5
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 3.0e-75 285.8 229 64.2
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 3.0e-75 285.8 241 56.4
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 3.0e-75 285.8 232 63.4
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 3.9e-75 285.4 229 61.6
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 8.7e-75 284.3 229 65.9
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.1e-74 283.9 232 65.1
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.5e-74 283.5 226 68.6
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 2.5e-74 282.7 279 54.1
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 3.3e-74 282.3 227 69.2
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 4.3e-74 282.0 237 60.3
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 4.3e-74 282.0 236 66.9
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 5.6e-74 281.6 242 57.0
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 7.4e-74 281.2 237 60.3
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 2.8e-73 279.3 223 65.9
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 2.8e-73 279.3 230 66.1
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 3.6e-73 278.9 226 66.8
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.6e-73 278.9 231 65.8
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 4.8e-73 278.5 225 66.2
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 6.2e-73 278.1 228 66.7
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 8.1e-73 277.7 236 56.4
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 1.1e-72 277.3 230 60.0
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 1.1e-72 277.3 230 60.0
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 1.4e-72 276.9 227 63.4
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 6.9e-72 274.6 244 56.6
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 6.9e-72 274.6 233 61.4
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 6.9e-72 274.6 214 65.4
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 6.9e-72 274.6 230 63.0
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 6.9e-72 274.6 229 61.1
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.2e-71 273.9 231 66.7
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.5e-71 273.5 227 63.4
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 2.6e-71 272.7 228 61.8
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 3.4e-71 272.3 231 66.2
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 5.8e-71 271.6 228 65.4
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 5.8e-71 271.6 227 62.6
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 1.3e-70 270.4 229 62.4
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.7e-70 270.0 236 55.1
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 2.9e-70 269.2 212 65.6
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 3.8e-70 268.9 233 64.4
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 1.1e-69 267.3 229 65.1
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.1e-69 267.3 248 59.7
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 1.4e-69 266.9 270 56.7
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.9e-69 266.5 237 60.3
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 2.4e-69 266.2 229 59.0
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.4e-69 266.2 229 59.0
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.4e-69 266.2 229 59.0
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 2.4e-69 266.2 231 66.7
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 3.2e-69 265.8 235 63.0
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 4.2e-69 265.4 231 58.4
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 7.1e-69 264.6 246 60.2
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.6e-68 263.5 180 70.6
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.6e-68 263.5 229 58.1
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 3.5e-68 262.3 237 61.2
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 6.0e-68 261.5 228 61.8
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 7.9e-68 261.2 229 66.4
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.1e-67 258.5 229 58.5
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 5.1e-67 258.5 254 55.9
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 6.7e-67 258.1 228 58.8
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 8.7e-67 257.7 236 59.3
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.1e-66 257.3 236 56.8
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.9e-66 256.5 220 64.1
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.9e-66 256.5 236 58.1
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 3.3e-66 255.8 146 80.8
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 7.4e-66 254.6 236 55.9
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 9.6e-66 254.2 173 67.6
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 9.6e-66 254.2 223 57.4
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 1.1e-64 250.8 228 53.9
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 6.9e-64 248.1 241 53.9
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 9.0e-64 247.7 191 60.7
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 2.0e-63 246.5 253 54.2
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.3e-62 243.8 225 53.3
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 8.4e-62 241.1 249 55.4
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 3.2e-61 239.2 221 55.7
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.6e-60 236.9 170 64.1
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 2.7e-60 236.1 265 52.1
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 2.3e-59 233.0 247 51.8
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 7.4e-58 228.0 147 70.7
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 5.3e-56 221.9 202 60.9
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.5e-55 220.3 141 73.0
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.5e-53 213.0 147 66.0
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 4.2e-53 212.2 239 50.2
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 9.3e-53 211.1 143 66.4
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.7e-52 209.5 178 60.1
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.0e-51 207.6 130 73.8
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.0e-51 206.1 280 43.6
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.5e-47 193.7 128 75.0
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 7.7e-47 191.4 128 70.3
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.7e-47 191.4 141 64.5
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 1.7e-46 190.3 127 70.9
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 5.0e-46 188.7 148 57.4
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 1.6e-44 183.7 144 57.6
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 3.8e-38 162.5 98 75.5
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 2.1e-36 156.8 131 61.8
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 8.8e-35 151.4 99 68.7
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.2e-33 146.7 237 40.9
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 3.3e-26 122.9 89 67.4
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 1.7e-25 120.6 88 81.8
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 5.3e-24 115.5 230 32.2
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.6e-23 114.0 122 48.4
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 5.9e-23 112.1 180 40.0
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 7.2e-21 105.1 105 66.7
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 2.3e-19 100.1 123 38.2
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 5.7e-18 95.5 79 55.7
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 8.3e-17 91.7 123 39.8
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 2.7e-15 86.7 124 34.7
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 2.9e-14 83.2 117 37.6
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 7.2e-13 78.6 80 48.8
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.5e-10 70.9 98 54.1
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 2.0e-10 70.5 101 51.5
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 3.4e-10 69.7 73 49.3
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 1.7e-09 67.4 90 60.0
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 4.5e-07 59.3 56 44.6


User provided reference genes

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