Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 4.9e-266 920.6 477 100.0
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.7e-133 480.3 495 60.2
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.1e-121 441.0 506 58.1
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 1.1e-92 344.7 503 47.1
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 5.3e-87 325.9 510 44.7
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.5e-86 322.8 509 45.2
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 3.9e-82 309.7 449 50.1
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 4.8e-80 302.8 508 43.5
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 4.1e-79 299.7 522 43.1
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.5e-78 297.7 515 43.7
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.6e-78 297.0 435 47.6
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 8.5e-77 292.0 502 43.0
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 1.9e-76 290.8 514 43.8
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 1.2e-75 288.1 516 43.2
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.6e-75 287.7 507 43.2
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 6.7e-74 282.3 504 42.3
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 2.6e-73 280.4 349 54.4
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 2.6e-73 280.4 508 42.5
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 4.4e-73 279.6 520 40.8
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 1.7e-72 277.7 498 40.2
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.1e-71 275.0 494 42.7
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.1e-71 275.0 491 42.6
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 3.1e-71 273.5 509 42.6
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 5.3e-71 272.7 512 41.0
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 7.0e-71 272.3 505 40.0
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 7.7e-70 268.9 513 40.0
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 1.3e-69 268.1 503 42.1
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 2.2e-69 267.3 501 41.5
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 5.0e-69 266.2 496 39.3
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.1e-68 265.0 512 39.6
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 5.5e-68 262.7 506 40.9
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.2e-67 261.5 419 46.3
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.6e-67 261.2 513 39.2
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.6e-67 261.2 512 39.6
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 2.3e-66 257.3 511 39.7
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 3.0e-66 256.9 509 38.9
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.5e-65 254.6 500 38.6
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 3.3e-65 253.4 512 38.3
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 9.7e-65 251.9 497 40.8
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.7e-64 251.1 509 39.9
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.7e-64 251.1 504 40.1
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 3.7e-64 250.0 499 39.7
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 1.1e-63 248.4 512 38.3
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 3.1e-63 246.9 513 38.6
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 4.1e-63 246.5 511 38.2
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.0e-61 241.9 509 37.9
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 1.0e-61 241.9 459 41.6
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.3e-61 241.5 536 38.1
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 3.8e-61 240.0 507 38.9
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 6.5e-61 239.2 498 39.4
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 6.5e-61 239.2 515 38.4
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 3.2e-60 236.9 510 37.8
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 5.5e-60 236.1 520 38.8
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 5.5e-60 236.1 517 39.5
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 5.5e-60 236.1 518 37.3
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 9.4e-60 235.3 500 39.0
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.2e-59 235.0 502 36.5
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 4.7e-59 233.0 470 40.2
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.0e-58 231.9 494 39.9
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 1.4e-58 231.5 494 37.7
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.4e-58 231.5 510 36.7
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 1.8e-58 231.1 496 36.3
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.3e-58 230.7 512 38.7
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 8.8e-58 228.8 521 39.0
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.2e-57 228.4 497 38.4
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.0e-57 227.6 497 37.0
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 2.6e-57 227.3 506 37.2
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 9.8e-57 225.3 518 36.7
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 2.2e-56 224.2 510 39.6
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 2.2e-56 224.2 508 36.2
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 4.1e-55 219.9 441 37.9
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.6e-54 218.0 528 36.7
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 2.9e-53 213.8 495 36.0
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 2.5e-52 210.7 526 36.7
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 1.2e-51 208.4 530 36.2
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 3.6e-51 206.8 497 37.2
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 8.0e-51 205.7 501 36.9
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 8.0e-51 205.7 506 34.0
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.0e-50 205.3 444 39.4
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 1.4e-50 204.9 495 35.2
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.8e-50 204.5 446 40.1
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.5e-49 201.4 496 36.7
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 1.5e-49 201.4 433 38.1
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 2.6e-49 200.7 452 37.2
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 3.4e-49 200.3 417 36.7
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 2.8e-48 197.2 484 35.1
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 3.7e-48 196.8 518 34.6
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 3.7e-48 196.8 516 34.3
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 4.9e-48 196.4 516 34.3
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 6.3e-48 196.1 433 34.9
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.4e-47 194.9 518 34.2
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.4e-47 194.9 508 34.3
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 2.4e-47 194.1 419 36.0
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 7.0e-47 192.6 442 37.1
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 9.2e-47 192.2 303 43.9
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.2e-46 191.8 512 34.0
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 2.7e-46 190.7 488 35.2
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 4.5e-46 189.9 511 33.9
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 2.3e-45 187.6 515 34.0
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 2.9e-45 187.2 427 36.5
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 1.1e-44 185.3 452 36.5
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.5e-44 184.9 422 37.4
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 4.3e-44 183.3 419 36.5
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 7.3e-44 182.6 509 34.2
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 9.5e-44 182.2 477 34.6
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 6.1e-43 179.5 509 32.0
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 8.0e-43 179.1 526 33.3
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.0e-42 178.7 515 33.4
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.3e-42 177.6 505 32.1
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.0e-42 177.2 506 32.8
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 5.7e-41 172.9 487 33.9
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 7.5e-41 172.6 426 34.5
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 3.7e-40 170.2 434 34.6
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 8.3e-40 169.1 516 33.5
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.4e-39 168.3 436 35.3
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.8e-39 167.9 498 32.5
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 4.1e-39 166.8 460 33.3
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 1.6e-38 164.9 143 62.9
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.6e-38 164.9 484 32.4
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 3.5e-38 163.7 502 33.5
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 3.9e-37 160.2 451 33.0
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.5e-36 158.3 438 33.1
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 7.3e-36 156.0 269 44.2
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.8e-35 154.1 481 32.2
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 3.6e-35 153.7 363 37.2
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 8.0e-35 152.5 362 34.0
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 6.8e-34 149.4 430 33.3
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 3.4e-33 147.1 451 31.7
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 2.2e-32 144.4 427 33.3
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 1.1e-31 142.1 413 32.2
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 4.1e-31 140.2 411 31.9
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 4.1e-31 140.2 413 32.0
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 4.1e-31 140.2 433 32.1
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.2e-30 138.7 391 35.0
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 1.6e-30 138.3 512 29.5
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.7e-29 134.8 415 30.1
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.9e-29 133.7 407 32.9
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 5.6e-28 129.8 438 33.1
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 3.1e-26 124.0 355 31.5
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 8.9e-26 122.5 432 29.9
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.3e-24 118.6 391 28.6
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 5.4e-23 113.2 123 54.5
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 7.1e-23 112.8 452 28.3
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 4.6e-22 110.2 305 35.1
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 1.5e-20 105.1 142 47.9
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.3e-20 104.0 413 31.5
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 1.4e-18 98.6 526 24.7
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 3.1e-18 97.4 176 38.1
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 8.9e-18 95.9 469 27.9
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 9.2e-15 85.9 437 29.1
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.5e-14 84.0 106 41.5
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.6e-14 83.6 168 36.3
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 1.1e-12 79.0 276 33.3
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 2.5e-12 77.8 230 29.1
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 4.3e-12 77.0 270 27.4
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 4.3e-12 77.0 235 28.9
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 1.1e-10 72.4 187 32.1
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.4e-10 72.0 120 34.2
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 1.4e-10 72.0 59 61.0
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 9.0e-10 69.3 220 29.1
unitig_26.g9098 Utricularia gibba HOM05D003987 ORTHO05D004532 2.0e-09 68.2 129 40.3
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 9.9e-09 65.9 228 28.9
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 3.8e-08 63.9 225 32.0
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 8.4e-08 62.8 85 42.4
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 8.4e-08 62.8 102 35.3
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.4e-07 62.0 226 28.8
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 4.2e-07 60.5 116 37.9
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 1.2e-06 58.9 248 26.6
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.6e-06 57.0 164 31.7
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 6.0e-06 56.6 72 41.7
Mapoly0053s0106 Marchantia polymorpha HOM05D003987 ORTHO05D004532 7.8e-06 56.2 215 27.4


User provided reference genes

Program Settings