Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G24983 Striga asiatica HOM05D005668 ORTHO05D007082 3.5e-132 474.9 236 100.0
Migut.J00254 Erythranthe guttata HOM05D005668 ORTHO05D007082 2.8e-81 305.8 255 62.7
MSTRG.5615 Avicennia marina HOM05D005668 ORTHO05D007082 2.1e-76 289.7 265 57.0
Lj3P959T33 Lonicera japonica HOM05D005668 ORTHO05D007082 3.7e-73 278.9 176 73.9
Cc06_g01940 Coffea canephora HOM05D005668 ORTHO05D007082 2.4e-72 276.2 264 54.9
Hma1.2p1_0671F.1_g200690 Hydrangea macrophylla HOM05D005668 ORTHO05D007082 1.2e-71 273.9 176 73.9
Actinidia13809 Actinidia chinensis HOM05D005668 ORTHO05D007082 5.9e-71 271.6 173 72.8
GSVIVG01034046001 Vitis vinifera HOM05D005668 ORTHO05D007082 1.3e-70 270.4 176 71.0
Peaxi162Scf00014g01419 Petunia axillaris HOM05D005668 ORTHO05D007082 1.7e-70 270.0 163 73.0
CSS0033766 Camellia sinensis var. sinensis HOM05D005668 ORTHO05D007082 2.9e-70 269.2 174 73.6
TAR633G1417 Trochodendron aralioides HOM05D005668 ORTHO05D007082 8.5e-70 267.7 177 72.3
Actinidia29156 Actinidia chinensis HOM05D005668 ORTHO05D007082 1.1e-69 267.3 163 74.2
unitig_27.g24805 Utricularia gibba HOM05D005668 ORTHO05D007082 3.2e-69 265.8 265 52.5
CAN.G978.9 Capsicum annuum HOM05D005668 ORTHO05D007082 4.2e-69 265.4 163 72.4
Nn2g13550 Nelumbo nucifera HOM05D005668 ORTHO05D007082 9.4e-69 264.2 173 70.5
Lsat_1_v5_gn_9_29260 Lactuca sativa HOM05D005668 ORTHO05D007082 1.6e-68 263.5 163 73.6
CAN.G351.19 Capsicum annuum HOM05D005668 ORTHO05D007082 2.1e-68 263.1 172 70.3
PGSC0003DMG400020340 Solanum tuberosum HOM05D005668 ORTHO05D007082 3.6e-68 262.3 163 71.8
HanXRQChr10g0292601 Helianthus annuus HOM05D005668 ORTHO05D007082 7.9e-68 261.2 163 72.4
PGSC0003DMG400019135 Solanum tuberosum HOM05D005668 ORTHO05D007082 7.9e-68 261.2 163 72.4
Solyc09g011730.4 Solanum lycopersicum HOM05D005668 ORTHO05D007082 1.0e-67 260.8 163 71.8
Sopen09g006550 Solanum pennellii HOM05D005668 ORTHO05D007082 1.0e-67 260.8 163 71.8
Nitab4.5_0000119g0350 Nicotiana tabacum HOM05D005668 ORTHO05D007082 2.3e-67 259.6 196 64.3
ECA247G1252 Erigeron canadensis HOM05D005668 ORTHO05D007082 2.0e-66 256.5 163 71.8
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 2.6e-66 256.1 160 71.2
Rhsim05G0201000 Rhododendron simsii HOM05D005668 ORTHO05D007082 2.6e-66 256.1 180 66.1
PSO384G2457 Papaver somniferum HOM05D005668 ORTHO05D007082 3.3e-66 255.8 225 57.3
HanXRQChr06g0176661 Helianthus annuus HOM05D005668 ORTHO05D007082 6.3e-65 251.5 236 53.4
PSO339G5656 Papaver somniferum HOM05D005668 ORTHO05D007082 6.3e-65 251.5 163 69.9
EL10Ac7g17156 Beta vulgaris HOM05D005668 ORTHO05D007082 8.2e-65 251.1 161 67.7
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 1.4e-64 250.4 163 71.8
AUR62034588 Chenopodium quinoa HOM05D005668 ORTHO05D007082 2.4e-64 249.6 161 68.3
Potri.016G105600 Populus trichocarpa HOM05D005668 ORTHO05D007082 3.1e-64 249.2 179 66.5
Hund26016 Selenicereus undatus HOM05D005668 ORTHO05D007082 3.1e-64 249.2 161 68.3
AUR62036679 Chenopodium quinoa HOM05D005668 ORTHO05D007082 5.3e-64 248.4 161 68.3
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 9.1e-64 247.7 163 70.6
DCAR_024047 Daucus carota HOM05D005668 ORTHO05D007082 2.0e-63 246.5 147 74.8
Aqoxy5G03828 Aquilegia oxysepala HOM05D005668 ORTHO05D007082 4.5e-63 245.4 190 61.6
Manes.09G099500 Manihot esculenta HOM05D005668 ORTHO05D007082 1.3e-62 243.8 196 59.2
CANSAT35G1374 Cannabis sativa HOM05D005668 ORTHO05D007082 2.9e-62 242.7 173 65.9
Potri.006G093700 Populus trichocarpa HOM05D005668 ORTHO05D007082 1.5e-61 240.4 173 65.3
TWI77G0370 Tripterygium wilfordii HOM05D005668 ORTHO05D007082 1.9e-61 240.0 179 61.5
Haze_20910 Corylus avellana HOM05D005668 ORTHO05D007082 5.5e-61 238.4 163 68.7
Sabra06G0071200 Salix brachista HOM05D005668 ORTHO05D007082 9.4e-61 237.7 175 63.4
Ciclev10012485m.g Citrus clementina HOM05D005668 ORTHO05D007082 1.6e-60 236.9 160 66.2
Thecc.05G026500 Theobroma cacao HOM05D005668 ORTHO05D007082 2.1e-60 236.5 160 65.6
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 3.6e-60 235.7 161 68.3
Atru.chr8.2154 Acer truncatum HOM05D005668 ORTHO05D007082 4.7e-60 235.3 174 62.6
Cpa.g.sc56.75 Carica papaya HOM05D005668 ORTHO05D007082 6.1e-60 235.0 154 67.5
Sc01g0004980 Simmondsia chinensis HOM05D005668 ORTHO05D007082 2.3e-59 233.0 158 66.5
MBI14_g25115_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 4.0e-59 232.3 170 64.1
COL.COLO4_14664 Corchorus olitorius HOM05D005668 ORTHO05D007082 6.7e-59 231.5 160 64.4
PGR044G0692 Punica granatum HOM05D005668 ORTHO05D007082 8.8e-59 231.1 175 61.1
CDE04G3656 Ceratophyllum demersum HOM05D005668 ORTHO05D007082 1.1e-58 230.7 176 60.8
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 1.1e-58 230.7 156 64.7
Prupe.6G267200 Prunus persica HOM05D005668 ORTHO05D007082 2.6e-58 229.6 184 60.3
Eucgr.F01481 Eucalyptus grandis HOM05D005668 ORTHO05D007082 4.4e-58 228.8 167 63.5
Gohir.A09G162000 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.2e-57 226.5 161 62.7
Gohir.D09G157600 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.2e-57 226.5 161 62.7
Gorai.006G179300 Gossypium raimondii HOM05D005668 ORTHO05D007082 2.2e-57 226.5 161 62.7
Manes.07G057000 Manihot esculenta HOM05D005668 ORTHO05D007082 1.4e-56 223.8 196 55.6
CsaV3_3G034370 Cucumis sativus L. HOM05D005668 ORTHO05D007082 4.1e-56 222.2 153 64.1
VMungo0540G0241 Vigna mungo HOM05D005668 ORTHO05D007082 4.1e-56 222.2 163 60.7
MELO3C009208.2 Cucumis melo HOM05D005668 ORTHO05D007082 7.0e-56 221.5 153 64.1
Glyma.03G073762 Glycine max HOM05D005668 ORTHO05D007082 7.0e-56 221.5 163 62.6
ClCG10G021640 Citrullus lanatus HOM05D005668 ORTHO05D007082 9.1e-56 221.1 174 60.3
Ca_07382_v3 Cicer arietinum L. HOM05D005668 ORTHO05D007082 1.6e-55 220.3 203 54.7
Carub.0003s0836 Capsella rubella HOM05D005668 ORTHO05D007082 2.6e-55 219.5 164 59.8
Os02g0788500 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 2.6e-55 219.5 176 59.1
AL3G20360 Arabidopsis lyrata HOM05D005668 ORTHO05D007082 3.5e-55 219.2 164 60.4
MD12G1156400 Malus domestica HOM05D005668 ORTHO05D007082 3.5e-55 219.2 174 59.2
Sed0009323 Sechium edule HOM05D005668 ORTHO05D007082 3.5e-55 219.2 153 62.1
arahy.Tifrunner.gnm1.ann1.J12K19 Arachis hypogaea HOM05D005668 ORTHO05D007082 5.9e-55 218.4 172 58.1
Glyma.01G107100 Glycine max HOM05D005668 ORTHO05D007082 5.9e-55 218.4 163 60.7
arahy.Tifrunner.gnm1.ann1.WQ4JXZ Arachis hypogaea HOM05D005668 ORTHO05D007082 7.7e-55 218.0 172 58.1
CARHR083600 Cardamine hirsuta HOM05D005668 ORTHO05D007082 1.3e-54 217.2 164 60.4
FAN05G5175 Fragaria x ananassa HOM05D005668 ORTHO05D007082 1.3e-54 217.2 170 58.8
Lalb_Chr07g0193171 Lupinus albus HOM05D005668 ORTHO05D007082 1.3e-54 217.2 165 60.0
MD04G1141800 Malus domestica HOM05D005668 ORTHO05D007082 2.2e-54 216.5 174 59.2
Sp3g07630 Schrenkiella parvula HOM05D005668 ORTHO05D007082 2.9e-54 216.1 164 60.4
RcHm_v2.0_Chr3g0464311 Rosa chinensis HOM05D005668 ORTHO05D007082 3.8e-54 215.7 174 58.0
AT3G09250 Arabidopsis thaliana HOM05D005668 ORTHO05D007082 5.0e-54 215.3 164 59.1
FvH4_6g12490 Fragaria vesca HOM05D005668 ORTHO05D007082 5.0e-54 215.3 160 60.0
FAN09G2081 Fragaria x ananassa HOM05D005668 ORTHO05D007082 5.0e-54 215.3 160 60.0
FAN14G5852 Fragaria x ananassa HOM05D005668 ORTHO05D007082 5.0e-54 215.3 160 60.0
Thhalv10021409m.g Eutrema salsugineum HOM05D005668 ORTHO05D007082 8.5e-54 214.5 230 49.6
Medtr4g019910 Medicago truncatula HOM05D005668 ORTHO05D007082 8.5e-54 214.5 171 57.3
Dinv37103 Davidia involucrata HOM05D005668 ORTHO05D007082 1.5e-53 213.8 176 61.9
FAN02G1041 Fragaria x ananassa HOM05D005668 ORTHO05D007082 1.5e-53 213.8 170 57.1
Phvul.006G070400 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 1.5e-53 213.8 163 58.9
THA.LOC104823270 Tarenaya hassleriana HOM05D005668 ORTHO05D007082 3.2e-53 212.6 171 57.3
BcaC09g48013 Brassica carinata HOM05D005668 ORTHO05D007082 9.4e-53 211.1 164 59.8
Aa31LG3G1740 Aethionema arabicum HOM05D005668 ORTHO05D007082 3.6e-52 209.1 161 59.0
Os01g0753200 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 4.7e-52 208.8 165 58.2
BolC1t05468H Brassica oleracea HOM05D005668 ORTHO05D007082 6.1e-52 208.4 164 57.9
Nitab4.5_0000008g0300 Nicotiana tabacum HOM05D005668 ORTHO05D007082 1.4e-51 207.2 127 67.7
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.3e-51 206.5 161 56.5
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 3.0e-51 206.1 161 56.5
Lj3g0016116 Lotus japonicus HOM05D005668 ORTHO05D007082 6.8e-51 204.9 160 56.9
BraA01t04309Z Brassica rapa HOM05D005668 ORTHO05D007082 1.2e-50 204.1 164 56.1
BcaC09g48059 Brassica carinata HOM05D005668 ORTHO05D007082 2.6e-50 203.0 187 51.9
SHI12750 Sapria himalayana HOM05D005668 ORTHO05D007082 3.4e-50 202.6 160 56.2
MBI14_g45810_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 1.3e-49 200.7 149 64.4
Psat7g240360 Pisum sativum HOM05D005668 ORTHO05D007082 1.7e-49 200.3 205 50.2
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 4.5e-47 192.2 152 57.2
ATR0950G003 Amborella trichopoda HOM05D005668 ORTHO05D007082 1.0e-46 191.0 166 54.2
HPP92_006850 Vanilla planifolia HOM05D005668 ORTHO05D007082 3.8e-46 189.1 157 54.1
SEGI_35617 Sequoiadendron giganteum HOM05D005668 ORTHO05D007082 6.5e-46 188.3 160 53.8
Phvul.006G070500 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 8.5e-46 188.0 163 50.9
HPP92_006867 Vanilla planifolia HOM05D005668 ORTHO05D007082 8.5e-46 188.0 157 53.5
Zm00001eb257420 Zea mays HOM05D005668 ORTHO05D007082 1.9e-45 186.8 179 52.5
Gohir.A10G229920 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.8e-43 180.3 151 55.0
BcaC01g04218 Brassica carinata HOM05D005668 ORTHO05D007082 2.0e-42 176.8 159 54.1
Oeu039148.1 Olea europaea HOM05D005668 ORTHO05D007082 7.0e-40 168.3 89 76.4
vmacro20204 Vaccinium macrocarpon HOM05D005668 ORTHO05D007082 1.9e-37 160.2 89 73.0
SMO143G0113 Selaginella moellendorffii HOM05D005668 ORTHO05D007082 3.6e-36 156.0 147 51.0
AagrBONN_evm.TU.Sc2ySwM_228.2951 Anthoceros agrestis HOM05D005668 ORTHO05D007082 1.7e-30 137.1 142 43.7
Dinv35535 Davidia involucrata HOM05D005668 ORTHO05D007082 5.0e-30 135.6 163 52.8
Nitab4.5_0002152g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 9.5e-29 131.3 103 63.1
BcaB04g18542 Brassica carinata HOM05D005668 ORTHO05D007082 1.8e-27 127.1 90 55.6
C03p43750 Brassica napus HOM05D005668 ORTHO05D007082 2.0e-26 123.6 90 55.6
Psat3g035960 Pisum sativum HOM05D005668 ORTHO05D007082 2.6e-26 123.2 106 59.4
Nitab4.5_0010516g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 1.9e-24 117.1 62 74.2
TPR.G2978 Trifolium pratense HOM05D005668 ORTHO05D007082 3.6e-20 102.8 119 52.1
arahy.Tifrunner.gnm1.ann1.2N10NB Arachis hypogaea HOM05D005668 ORTHO05D007082 4.9e-17 92.4 114 49.1
BraA03t12781Z Brassica rapa HOM05D005668 ORTHO05D007082 3.5e-15 86.3 80 52.5
Cre08.g375950 Chlamydomonas reinhardtii HOM05D005668 ORTHO05D007082 1.3e-14 84.3 133 34.6
A03p36100 Brassica napus HOM05D005668 ORTHO05D007082 1.7e-14 84.0 76 52.6
Atru.chr10.1066 Acer truncatum HOM05D005668 ORTHO05D007082 8.6e-14 81.6 60 68.3
Mapoly0024s0042 Marchantia polymorpha HOM05D005144 ORTHO05D006112 1.2e-10 71.2 109 33.0
SMO356G0181 Selaginella moellendorffii HOM05D005144 ORTHO05D006112 4.4e-10 69.3 109 33.9
TPR.G339 Trifolium pratense HOM05D005668 ORTHO05D007082 8.4e-09 65.1 104 36.5
Potri.003G141600 Populus trichocarpa HOM05D005144 ORTHO05D006112 1.4e-08 64.3 109 30.3
Manes.02G008400 Manihot esculenta HOM05D005144 ORTHO05D006112 1.9e-08 63.9 109 30.3
Manes.01G052400 Manihot esculenta HOM05D005144 ORTHO05D006112 1.2e-07 61.2 109 29.4
Migut.E01282 Erythranthe guttata HOM05D005144 ORTHO05D006112 2.1e-07 60.5 111 30.6
Lalb_Chr09g0332261 Lupinus albus HOM05D005144 ORTHO05D006112 7.8e-07 58.5 109 29.4
TWI15G0686 Tripterygium wilfordii HOM05D005144 ORTHO05D006112 1.7e-06 57.4 109 31.2


User provided reference genes

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