Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 6.2e-269 930.2 478 100.0
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 1.8e-207 726.1 490 77.3
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 4.7e-200 701.4 560 68.4
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 1.5e-195 686.4 490 74.7
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 2.9e-194 682.2 491 74.5
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 6.5e-194 681.0 491 74.3
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 7.2e-193 677.6 491 73.9
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.8e-191 672.9 490 72.9
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 1.1e-190 670.2 457 77.0
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 2.0e-190 669.5 457 77.7
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 2.0e-187 659.4 461 76.4
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 2.0e-187 659.4 490 71.0
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 3.5e-187 658.7 488 70.7
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 5.9e-187 657.9 490 72.0
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 1.3e-186 656.8 485 70.5
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.9e-185 652.9 477 72.7
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 4.2e-185 651.7 474 71.9
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 1.6e-184 649.8 485 71.5
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 1.4e-183 646.7 484 69.6
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.2e-182 643.7 488 70.9
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 2.0e-182 642.9 486 70.8
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 9.8e-182 640.6 488 70.7
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 9.8e-182 640.6 487 69.4
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 2.8e-181 639.0 484 68.8
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 3.7e-181 638.6 463 73.4
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 4.8e-181 638.3 491 70.9
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 8.3e-181 637.5 492 69.7
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 1.4e-180 636.7 497 68.2
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 2.4e-180 636.0 501 69.5
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 3.1e-180 635.6 487 70.4
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 4.1e-180 635.2 457 72.4
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 5.4e-180 634.8 483 69.2
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 5.4e-180 634.8 486 69.5
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 5.4e-180 634.8 491 69.0
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 1.6e-179 633.3 458 72.7
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 2.0e-179 632.9 521 65.6
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 2.0e-179 632.9 463 72.8
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 3.5e-179 632.1 488 69.5
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 1.0e-178 630.6 467 71.3
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 1.1e-177 627.1 475 69.3
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 2.5e-177 625.9 472 71.2
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 4.2e-177 625.2 468 68.8
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 4.2e-177 625.2 447 72.7
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 5.5e-177 624.8 428 77.6
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 7.2e-177 624.4 490 68.8
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 1.2e-176 623.6 512 68.4
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 1.6e-176 623.2 502 66.7
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 2.7e-176 622.5 501 68.1
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 1.0e-175 620.5 466 71.7
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 2.3e-175 619.4 490 67.6
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 5.2e-175 618.2 485 67.2
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 6.8e-175 617.8 492 68.1
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 8.8e-175 617.5 477 69.0
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 8.8e-175 617.5 490 66.5
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 2.0e-174 616.3 444 73.4
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 2.0e-174 616.3 490 66.1
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 2.6e-174 615.9 491 68.2
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.4e-174 615.5 492 67.7
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 3.4e-174 615.5 492 67.5
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 4.4e-174 615.1 463 69.5
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 5.7e-174 614.8 476 69.5
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 7.5e-174 614.4 484 67.6
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 9.8e-174 614.0 472 68.4
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 1.7e-173 613.2 483 68.7
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 3.7e-173 612.1 457 70.5
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 4.9e-173 611.7 483 68.9
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 8.3e-173 610.9 488 66.0
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 8.3e-173 610.9 483 68.3
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 1.1e-172 610.5 461 70.1
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 1.4e-172 610.1 445 72.1
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 1.6e-171 606.7 484 66.5
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 2.0e-171 606.3 490 65.7
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 2.7e-171 605.9 491 66.4
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.3e-170 603.6 484 65.7
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.7e-170 603.2 484 65.9
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 2.3e-170 602.8 480 66.0
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 3.8e-170 602.1 484 66.1
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.1e-169 600.5 484 65.9
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 1.5e-169 600.1 474 66.2
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 1.9e-169 599.7 484 66.1
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 4.3e-169 598.6 480 65.8
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 4.3e-169 598.6 474 67.5
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 5.6e-169 598.2 484 65.7
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 5.6e-169 598.2 484 65.9
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 9.5e-169 597.4 492 64.2
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 6.1e-168 594.7 482 66.0
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 1.8e-167 593.2 484 65.3
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 3.0e-167 592.4 481 65.7
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 4.0e-167 592.0 484 65.1
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 1.3e-165 587.0 497 65.0
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 4.9e-165 585.1 472 65.3
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 1.1e-164 583.9 510 62.4
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 6.6e-162 574.7 444 70.3
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 5.6e-161 571.6 418 73.0
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 1.2e-160 570.5 425 70.4
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 1.2e-158 563.9 471 64.5
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 3.4e-158 562.4 440 69.3
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 8.3e-157 557.8 441 65.8
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 6.6e-154 548.1 428 70.1
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 1.9e-153 546.6 443 65.0
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.4e-151 540.4 404 69.3
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.7e-149 533.5 407 71.7
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 2.1e-147 526.6 421 68.9
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 4.6e-147 525.4 450 62.2
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 4.3e-145 518.8 431 66.1
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 2.3e-138 496.5 366 75.1
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.1e-132 477.6 498 59.2
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.1e-129 467.6 453 55.2
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 4.3e-121 439.1 379 61.2
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 3.6e-120 436.0 444 58.1
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 1.7e-117 427.2 456 53.5
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 7.1e-116 421.8 348 62.4
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 4.6e-115 419.1 453 52.1
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 1.1e-111 407.9 338 67.2
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.2e-101 373.6 270 75.2
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 4.2e-100 369.4 399 53.9
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.7e-83 313.5 190 82.6
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 7.4e-81 305.4 260 66.5
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 4.8e-80 302.8 254 67.3
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 6.7e-74 282.3 195 73.8
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.7e-72 276.6 196 73.0
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 7.2e-68 262.3 206 66.0
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.3e-56 224.9 201 66.2
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 4.3e-52 209.9 147 70.1
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.9e-44 184.5 480 33.1
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 8.0e-43 179.1 124 70.2
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 4.7e-35 153.3 140 62.1
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 8.1e-35 152.5 137 62.8
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 8.3e-32 142.5 252 38.9
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.2e-30 138.7 130 60.0
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 3.0e-29 134.0 269 37.5
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 5.1e-29 133.3 252 36.9
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 7.6e-25 119.4 102 63.7
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 1.7e-24 118.2 103 60.2
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 6.4e-24 116.3 222 37.4
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 3.0e-21 107.5 72 75.0
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 1.5e-20 105.1 101 58.4
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 8.9e-18 95.9 121 48.8
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 7.1e-15 86.3 70 67.1
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 7.1e-15 86.3 70 67.1
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 1.0e-13 82.4 46 78.3
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 1.0e-13 82.4 46 78.3
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 3.9e-13 80.5 154 38.3
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 2.5e-12 77.8 61 55.7
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 3.3e-12 77.4 78 55.1
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 7.3e-12 76.3 90 54.4
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 1.6e-11 75.1 64 62.5
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 3.6e-11 73.9 164 34.8
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 1.1e-10 72.4 127 39.4
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 2.4e-10 71.2 80 52.5
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 3.1e-10 70.9 127 38.6
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 3.1e-10 70.9 127 38.6
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 3.1e-10 70.9 127 38.6
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 4.0e-10 70.5 127 38.6
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 5.3e-10 70.1 131 40.5
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 5.3e-10 70.1 127 37.8
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 5.3e-10 70.1 64 57.8
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 5.3e-10 70.1 64 57.8
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 6.9e-10 69.7 63 58.7
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 6.9e-10 69.7 64 57.8
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 1.2e-09 68.9 76 51.3
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 2.9e-08 64.3 46 60.9
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 4.9e-08 63.5 61 60.7
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 6.4e-08 63.2 129 37.2
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 1.4e-07 62.0 56 60.7
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 3.5e-06 57.4 39 71.8


User provided reference genes

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