Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 4.4e-251 870.9 471 100.0
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 6.0e-184 647.9 453 72.6
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 1.0e-183 647.1 477 69.8
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.3e-183 646.7 453 72.4
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 5.8e-179 631.3 474 70.0
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 2.2e-154 549.7 448 67.4
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 1.1e-148 530.8 448 60.3
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.5e-147 526.9 452 60.4
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 2.1e-144 516.5 448 57.8
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 2.3e-143 513.1 472 58.7
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 6.5e-138 495.0 436 58.9
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 1.9e-137 493.4 436 58.7
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 4.2e-137 492.3 413 61.7
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 2.2e-133 479.9 474 54.2
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 8.2e-133 478.0 452 54.9
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 8.8e-127 458.0 468 54.1
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.6e-126 456.4 470 53.4
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 5.7e-126 455.3 452 51.3
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 7.5e-126 454.9 451 52.5
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.2e-125 453.4 445 53.0
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 4.5e-123 445.7 464 51.3
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 5.9e-123 445.3 461 51.2
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 5.0e-122 442.2 471 50.5
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 1.5e-121 440.7 459 50.5
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 1.9e-121 440.3 463 49.0
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 4.2e-121 439.1 458 51.1
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 2.1e-120 436.8 461 49.9
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 8.0e-120 434.9 472 50.8
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 2.3e-119 433.3 469 49.0
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 3.0e-119 433.0 470 49.8
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 2.6e-118 429.9 465 49.2
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 4.1e-116 422.5 471 51.0
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 5.4e-116 422.2 462 50.2
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 1.6e-115 420.6 457 50.3
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 2.3e-114 416.8 470 47.9
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 8.6e-114 414.8 465 47.5
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 3.3e-113 412.9 470 48.5
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 1.2e-112 411.0 462 48.1
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.8e-112 409.8 470 46.2
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 6.1e-112 408.7 481 47.0
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 1.8e-111 407.1 466 47.6
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 4.0e-111 406.0 470 46.0
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 1.5e-110 404.1 456 47.1
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 1.5e-110 404.1 449 49.7
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.0e-110 403.7 458 49.1
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 3.4e-110 402.9 453 48.8
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.3e-109 401.0 453 48.6
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 2.9e-109 399.8 465 46.7
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 2.9e-109 399.8 453 48.3
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 6.4e-109 398.7 459 47.1
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 8.3e-109 398.3 453 48.1
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 8.3e-109 398.3 463 48.6
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 5.4e-108 395.6 459 47.1
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 5.4e-108 395.6 471 47.8
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 4.6e-107 392.5 512 45.9
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 3.9e-106 389.4 460 45.2
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 3.9e-106 389.4 435 46.4
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 5.0e-106 389.0 453 47.0
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 6.6e-106 388.7 452 47.8
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 6.6e-106 388.7 449 47.0
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.1e-105 387.9 449 47.0
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.9e-105 387.1 453 47.9
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 1.9e-105 387.1 450 49.1
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.6e-105 385.6 449 46.5
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 3.6e-104 382.9 478 47.5
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 4.7e-104 382.5 456 46.9
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 6.2e-104 382.1 465 45.2
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 8.0e-104 381.7 456 46.3
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.1e-103 381.3 453 47.0
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.4e-103 380.9 437 47.1
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.3e-103 380.2 429 46.9
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 5.2e-103 379.0 468 45.7
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 1.2e-102 377.9 441 46.3
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 1.2e-102 377.9 445 47.0
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.6e-102 376.7 468 45.5
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 4.4e-102 375.9 467 45.0
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.4e-102 375.9 437 45.1
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 4.4e-102 375.9 462 45.2
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 5.8e-102 375.6 465 44.9
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 5.8e-102 375.6 462 44.2
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.7e-101 374.0 460 45.2
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.7e-101 372.9 450 46.4
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 4.9e-101 372.5 344 55.8
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 6.4e-101 372.1 468 44.7
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 7.0e-100 368.6 461 47.1
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 3.5e-99 366.3 465 41.9
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.3e-98 364.4 457 46.4
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 1.7e-98 364.0 477 43.2
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.7e-98 364.0 459 46.4
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 2.3e-98 363.6 601 37.1
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 5.1e-98 362.5 459 45.8
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 8.6e-98 361.7 465 41.7
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 8.6e-98 361.7 476 41.2
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 1.1e-97 361.3 459 45.8
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.5e-97 360.9 441 43.8
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 2.5e-97 360.1 457 43.3
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 2.5e-97 360.1 459 45.5
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 3.3e-97 359.8 456 45.4
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 1.6e-96 357.5 456 44.5
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 6.2e-96 355.5 579 40.1
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 2.6e-94 350.1 444 44.8
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 3.5e-91 339.7 459 43.6
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 3.9e-90 336.3 463 42.3
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 6.6e-90 335.5 453 41.1
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 5.6e-89 332.4 467 45.6
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 5.6e-89 332.4 462 41.8
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 3.6e-88 329.7 460 42.4
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 8.1e-88 328.6 454 41.4
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.7e-85 320.9 387 46.3
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 3.8e-85 319.7 283 53.7
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 2.7e-83 313.5 362 44.2
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 9.6e-81 305.1 265 57.0
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 1.3e-80 304.7 437 39.8
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.3e-79 299.3 282 50.0
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.3e-79 299.3 282 50.0
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 4.4e-78 296.2 431 39.7
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 4.4e-78 296.2 253 52.2
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 1.7e-77 294.3 265 50.9
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 1.4e-71 274.6 263 52.1
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.5e-67 260.0 342 44.4
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 2.3e-66 257.3 452 34.7
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 9.3e-60 235.3 462 34.8
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.8e-58 231.1 444 35.4
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 4.3e-57 226.5 453 33.3
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 1.2e-54 218.4 414 34.3
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 1.2e-43 181.8 450 33.1
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 7.9e-43 179.1 214 39.3
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.4e-42 178.3 452 29.2
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 5.7e-41 172.9 432 33.8
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 3.7e-40 170.2 458 31.0
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 3.7e-40 170.2 256 37.5
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 5.3e-39 166.4 447 31.8
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 8.5e-37 159.1 459 27.0
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 8.5e-37 159.1 313 36.1
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 4.2e-36 156.8 313 36.7
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 1.3e-32 145.2 119 56.3
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 4.8e-32 143.3 136 47.1
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 1.2e-30 138.7 235 37.9
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 1.2e-30 138.7 234 36.8
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 7.7e-30 136.0 235 37.9
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.5e-28 131.7 239 31.8
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.5e-28 131.0 222 44.6
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.0e-23 112.8 94 53.2
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.3e-21 108.6 192 32.8
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 2.2e-21 107.8 163 37.4
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 3.2e-20 104.0 227 43.2
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 3.7e-16 90.5 161 32.9
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 4.1e-15 87.0 147 37.4
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.0e-14 84.7 97 44.3
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 5.0e-13 80.1 131 44.3
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 3.2e-12 77.4 85 50.6
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.1e-11 74.7 135 40.7
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.6e-11 73.9 143 39.9
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 2.3e-10 71.2 152 33.6
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 2.3e-10 71.2 152 33.6
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.2e-10 70.1 161 42.2
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 8.3e-08 62.8 61 54.1
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.8e-07 61.6 64 53.1
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-06 58.9 61 50.8


User provided reference genes

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