Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G24848 Striga asiatica HOM05D006449 ORTHO05D007995 1.2e-76 289.7 137 100.0
SGA_v2.0_scaffold40G15520 Striga asiatica HOM05D006449 ORTHO05D007995 1.1e-48 196.8 100 92.0
Oeu041490.2 Olea europaea HOM05D006449 ORTHO05D007995 8.5e-46 187.2 132 68.2
HanXRQChr01g0027751 Helianthus annuus HOM05D006449 ORTHO05D007995 6.1e-44 181.0 99 83.8
EL10Ac7g16636 Beta vulgaris HOM05D006449 ORTHO05D007995 3.0e-43 178.7 119 71.4
Nitab4.5_0000814g0040 Nicotiana tabacum HOM05D006449 ORTHO05D007995 8.8e-43 177.2 90 87.8
COL.COLO4_26955 Corchorus olitorius HOM05D006449 ORTHO05D007995 1.1e-42 176.8 93 87.1
MSTRG.5764 Avicennia marina HOM05D006449 ORTHO05D007995 1.5e-42 176.4 91 89.0
Gorai.002G246900 Gossypium raimondii HOM05D006449 ORTHO05D007995 9.7e-42 173.7 116 72.4
Nn6g35286 Nelumbo nucifera HOM05D006449 ORTHO05D007995 9.7e-42 173.7 119 71.4
Rhsim03G0091200 Rhododendron simsii HOM05D006449 ORTHO05D007995 1.3e-41 173.3 93 84.9
Duzib093G0849 Durio zibethinus HOM05D006449 ORTHO05D007995 1.7e-41 172.9 116 71.6
Nn2g13802 Nelumbo nucifera HOM05D006449 ORTHO05D007995 2.2e-41 172.6 91 84.6
PGR004G0793 Punica granatum HOM05D006449 ORTHO05D007995 2.2e-41 172.6 91 87.9
Actinidia08770 Actinidia chinensis HOM05D006449 ORTHO05D007995 3.7e-41 171.8 119 68.9
Aqoxy1G01150 Aquilegia oxysepala HOM05D006449 ORTHO05D007995 3.7e-41 171.8 91 84.6
Sabra06G0098200 Salix brachista HOM05D006449 ORTHO05D007995 4.8e-41 171.4 94 86.2
CSS0028691 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 6.3e-41 171.0 91 84.6
Gohir.A01G213500 Gossypium hirsutum HOM05D006449 ORTHO05D007995 6.3e-41 171.0 116 70.7
Thecc.05G067500 Theobroma cacao HOM05D006449 ORTHO05D007995 6.3e-41 171.0 116 69.8
Solyc09g008230.3 Solanum lycopersicum HOM05D006449 ORTHO05D007995 8.2e-41 170.6 90 85.6
Sopen09g003050 Solanum pennellii HOM05D006449 ORTHO05D007995 8.2e-41 170.6 90 85.6
CiPaw.10G129500 Carya illinoinensis HOM05D006449 ORTHO05D007995 1.1e-40 170.2 89 85.4
Gohir.D01G202200 Gossypium hirsutum HOM05D006449 ORTHO05D007995 1.1e-40 170.2 116 71.6
Lalb_Chr02g0155801 Lupinus albus HOM05D006449 ORTHO05D007995 1.1e-40 170.2 88 87.5
AUR62040339 Chenopodium quinoa HOM05D006449 ORTHO05D007995 1.4e-40 169.9 119 67.2
Manes.09G065800 Manihot esculenta HOM05D006449 ORTHO05D007995 1.4e-40 169.9 91 84.6
DCAR_015000 Daucus carota HOM05D006449 ORTHO05D007995 1.8e-40 169.5 120 69.2
PGSC0003DMG400003863 Solanum tuberosum HOM05D006449 ORTHO05D007995 1.8e-40 169.5 90 84.4
AUR62042508 Chenopodium quinoa HOM05D006449 ORTHO05D007995 2.4e-40 169.1 119 67.2
Hma1.2p1_0205F.1_g086990 Hydrangea macrophylla HOM05D006449 ORTHO05D007995 2.4e-40 169.1 91 84.6
Peaxi162Scf00311g00119 Petunia axillaris HOM05D006449 ORTHO05D007995 4.1e-40 168.3 90 83.3
CAN.G900.29 Capsicum annuum HOM05D006449 ORTHO05D007995 5.3e-40 167.9 90 83.3
Glyma.10G055200 Glycine max HOM05D006449 ORTHO05D007995 6.9e-40 167.5 91 84.6
HanXRQChr15g0491571 Helianthus annuus HOM05D006449 ORTHO05D007995 9.1e-40 167.2 91 84.6
Nitab4.5_0003861g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 9.1e-40 167.2 90 83.3
Sed0015731 Sechium edule HOM05D006449 ORTHO05D007995 2.0e-39 166.0 91 83.5
TWI74G0214 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 2.0e-39 166.0 91 83.5
Atru.chr8.1798 Acer truncatum HOM05D006449 ORTHO05D007995 2.6e-39 165.6 91 82.4
ClCG04G009390 Citrullus lanatus HOM05D006449 ORTHO05D007995 2.6e-39 165.6 91 83.5
ECA248G0052 Erigeron canadensis HOM05D006449 ORTHO05D007995 2.6e-39 165.6 91 87.9
TWI77G0881 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 2.6e-39 165.6 91 83.5
QL07p043219 Quercus lobata HOM05D006449 ORTHO05D007995 4.5e-39 164.9 87 83.9
GSVIVG01033644001 Vitis vinifera HOM05D006449 ORTHO05D007995 4.5e-39 164.9 89 84.3
CANSAT80G0535 Cannabis sativa HOM05D006449 ORTHO05D007995 5.9e-39 164.5 88 86.4
Peaxi162Scf00638g00414 Petunia axillaris HOM05D006449 ORTHO05D007995 5.9e-39 164.5 90 83.3
Glyma.13G142300 Glycine max HOM05D006449 ORTHO05D007995 1.0e-38 163.7 91 81.3
Lj5g0001377 Lotus japonicus HOM05D006449 ORTHO05D007995 2.2e-38 162.5 91 82.4
CsaV3_6G039970 Cucumis sativus L. HOM05D006449 ORTHO05D007995 3.8e-38 161.8 91 81.3
Phvul.007G219000 Phaseolus vulgaris HOM05D006449 ORTHO05D007995 3.8e-38 161.8 91 81.3
Sabra16G0098600 Salix brachista HOM05D006449 ORTHO05D007995 5.0e-38 161.4 119 67.2
Psat6g074040 Pisum sativum HOM05D006449 ORTHO05D007995 6.5e-38 161.0 91 80.2
TPR.G11267 Trifolium pratense HOM05D006449 ORTHO05D007995 6.5e-38 161.0 91 79.1
Potri.016G093500 Populus trichocarpa HOM05D006449 ORTHO05D007995 8.5e-38 160.6 119 67.2
VMungo0720G3134 Vigna mungo HOM05D006449 ORTHO05D007995 1.1e-37 160.2 91 81.3
MELO3C024474.2 Cucumis melo HOM05D006449 ORTHO05D007995 2.5e-37 159.1 88 83.0
Cc06_g04250 Coffea canephora HOM05D006449 ORTHO05D007995 3.2e-37 158.7 77 92.2
MD12G1112600 Malus domestica HOM05D006449 ORTHO05D007995 4.2e-37 158.3 88 81.8
Medtr1g063190 Medicago truncatula HOM05D006449 ORTHO05D007995 5.5e-37 157.9 91 78.0
Hund26578 Selenicereus undatus HOM05D006449 ORTHO05D007995 5.5e-37 157.9 119 63.0
BcaB01g03807 Brassica carinata HOM05D006449 ORTHO05D007995 1.2e-36 156.8 114 63.2
Ca_11505_v3 Cicer arietinum L. HOM05D006449 ORTHO05D007995 1.2e-36 156.8 91 78.0
Thhalv10017435m.g Eutrema salsugineum HOM05D006449 ORTHO05D007995 1.2e-36 156.8 113 63.7
FAN05G0981 Fragaria x ananassa HOM05D006449 ORTHO05D007995 1.2e-36 156.8 121 66.1
FAN14G2797 Fragaria x ananassa HOM05D006449 ORTHO05D007995 1.2e-36 156.8 121 66.1
FAN14G3008 Fragaria x ananassa HOM05D006449 ORTHO05D007995 1.2e-36 156.8 121 66.1
unitig_749.g14285 Utricularia gibba HOM05D006449 ORTHO05D007995 1.6e-36 156.4 118 65.3
BcaB02g09320 Brassica carinata HOM05D006449 ORTHO05D007995 2.1e-36 156.0 114 63.2
BcaC02g11815 Brassica carinata HOM05D006449 ORTHO05D007995 2.1e-36 156.0 114 63.2
CDE09G0874 Ceratophyllum demersum HOM05D006449 ORTHO05D007995 2.1e-36 156.0 91 79.1
ATR0219G007 Amborella trichopoda HOM05D006449 ORTHO05D007995 2.7e-36 155.6 88 78.4
A05p08950 Brassica napus HOM05D006449 ORTHO05D007995 2.7e-36 155.6 114 63.2
C04p11060 Brassica napus HOM05D006449 ORTHO05D007995 2.7e-36 155.6 114 63.2
BolC4t22754H Brassica oleracea HOM05D006449 ORTHO05D007995 2.7e-36 155.6 114 63.2
BraA05t19857Z Brassica rapa HOM05D006449 ORTHO05D007995 2.7e-36 155.6 114 63.2
CARHR131400 Cardamine hirsuta HOM05D006449 ORTHO05D007995 2.7e-36 155.6 116 61.2
Lsat_1_v5_gn_1_52340 Lactuca sativa HOM05D006449 ORTHO05D007995 2.7e-36 155.6 86 82.6
MD00G1155400 Malus domestica HOM05D006449 ORTHO05D007995 2.7e-36 155.6 88 80.7
Hund20380 Selenicereus undatus HOM05D006449 ORTHO05D007995 3.6e-36 155.2 119 62.2
SEGI_04945 Sequoiadendron giganteum HOM05D006449 ORTHO05D007995 3.6e-36 155.2 87 79.3
CSS0018897 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 4.7e-36 154.8 80 86.2
FvH4_6g16440 Fragaria vesca HOM05D006449 ORTHO05D007995 4.7e-36 154.8 120 65.0
THA.LOC104823475 Tarenaya hassleriana HOM05D006449 ORTHO05D007995 4.7e-36 154.8 116 63.8
FAN02G2429 Fragaria x ananassa HOM05D006449 ORTHO05D007995 6.1e-36 154.5 121 65.3
AT2G36930 Arabidopsis thaliana HOM05D006449 ORTHO05D007995 7.9e-36 154.1 114 62.3
BcaC01g05620 Brassica carinata HOM05D006449 ORTHO05D007995 1.0e-35 153.7 114 61.4
C03p23890 Brassica napus HOM05D006449 ORTHO05D007995 1.0e-35 153.7 114 61.4
BolC3t14781H Brassica oleracea HOM05D006449 ORTHO05D007995 1.0e-35 153.7 114 61.4
AL4G33170 Arabidopsis lyrata HOM05D006449 ORTHO05D007995 1.4e-35 153.3 114 61.4
A03p20330 Brassica napus HOM05D006449 ORTHO05D007995 1.4e-35 153.3 114 61.4
BraA03t11279Z Brassica rapa HOM05D006449 ORTHO05D007995 1.4e-35 153.3 114 61.4
RcHm_v2.0_Chr3g0470301 Rosa chinensis HOM05D006449 ORTHO05D007995 1.4e-35 153.3 121 65.3
Carub.0004s1878 Capsella rubella HOM05D006449 ORTHO05D007995 3.9e-35 151.8 114 61.4
Sp4g19220 Schrenkiella parvula HOM05D006449 ORTHO05D007995 5.1e-35 151.4 114 61.4
HPP92_025806 Vanilla planifolia HOM05D006449 ORTHO05D007995 6.7e-35 151.0 90 78.9
Zm00001eb038700 Zea mays HOM05D006449 ORTHO05D007995 1.1e-34 150.2 96 74.0
Os08g0564500 Oryza sativa ssp. japonica HOM05D006449 ORTHO05D007995 2.6e-34 149.1 96 75.0
Potri.006G124100 Populus trichocarpa HOM05D006449 ORTHO05D007995 1.3e-33 146.7 74 90.5
Aa31LG5G22150 Aethionema arabicum HOM05D006449 ORTHO05D007995 6.3e-33 144.4 85 75.3
Mapoly0185s0018 Marchantia polymorpha HOM05D006449 ORTHO05D007995 2.0e-31 139.4 87 72.4
Pp3c13_22060 Physcomitrium patens HOM05D006449 ORTHO05D007995 2.2e-30 136.0 87 67.8
Cfa017617 Carpinus fangiana HOM05D006449 ORTHO05D007995 1.1e-29 133.7 91 70.3
SMO144G0185 Selaginella moellendorffii HOM05D006449 ORTHO05D007995 6.1e-28 127.9 88 64.8
Oeu005023.1 Olea europaea HOM05D006449 ORTHO05D007995 1.4e-27 126.7 98 60.2
vmacro07293 Vaccinium macrocarpon HOM05D006449 ORTHO05D007995 2.4e-24 115.9 103 56.3
Nitab4.5_0029554g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 3.5e-23 112.1 62 77.4
Ciclev10013228m.g Citrus clementina HOM05D006449 ORTHO05D007995 3.8e-22 108.6 57 82.5
Migut.J00654 Erythranthe guttata HOM05D006449 ORTHO05D007995 6.5e-22 107.8 57 78.9
Sc20g0005520 Simmondsia chinensis HOM05D006449 ORTHO05D007995 1.1e-21 107.1 85 58.8
Haze_20546 Corylus avellana HOM05D006449 ORTHO05D007995 1.9e-21 106.3 98 52.0
PSO063G3287 Papaver somniferum HOM05D006449 ORTHO05D007995 2.5e-21 105.9 88 58.0
PSO339G4301 Papaver somniferum HOM05D006449 ORTHO05D007995 2.5e-21 105.9 88 58.0
Manes.08G011000 Manihot esculenta HOM05D006449 ORTHO05D007995 1.6e-20 103.2 76 69.7
arahy.Tifrunner.gnm1.ann1.9GBJ25 Arachis hypogaea HOM05D006449 ORTHO05D007995 2.1e-20 102.8 57 77.2
arahy.Tifrunner.gnm1.ann1.D9FX9P Arachis hypogaea HOM05D006449 ORTHO05D007995 2.1e-20 102.8 57 77.2
TAR633G1413 Trochodendron aralioides HOM05D002509 ORTHO05D002758 2.3e-19 99.4 54 81.5
CBR_g8310 Chara braunii HOM05D006449 ORTHO05D007995 6.5e-14 81.3 51 66.7
Cre17.g734628 Chlamydomonas reinhardtii HOM05D006449 ORTHO05D007995 3.2e-13 79.0 98 39.8
PRCOL_00003735 Prasinoderma coloniale HOM05D006449 ORTHO05D007995 1.2e-12 77.0 90 43.3
MCO09G543 Micromonas commoda HOM05D006449 ORTHO05D007995 1.8e-11 73.2 74 47.3
MSTRG.19181 Avicennia marina HOM05D006449 ORTHO05D007995 1.7e-09 66.6 33 90.9
Lj3A986G82 Lonicera japonica HOM05D006449 ORTHO05D007995 2.2e-09 66.2 34 88.2
Prupe.7G129700 Prunus persica HOM05D006449 ORTHO05D007995 2.8e-09 65.9 64 46.9
HanXRQChr16g0526221 Helianthus annuus HOM05D006449 ORTHO05D007995 3.7e-09 65.5 30 90.0
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 2.4e-08 62.8 31 87.1
unitig_75.g29315 Utricularia gibba HOM05D006449 ORTHO05D007995 3.8e-06 55.5 25 96.0


User provided reference genes

Program Settings