Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 5.0e-54 214.2 106 100.0
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 1.1e-45 186.4 103 86.4
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 2.8e-44 181.8 103 82.5
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 4.0e-43 177.9 98 86.7
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 5.2e-43 177.6 103 80.6
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 8.8e-43 176.8 103 80.6
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 1.2e-42 176.4 103 80.6
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 1.2e-42 176.4 103 80.6
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 2.0e-42 175.6 103 78.6
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 2.6e-42 175.3 103 78.6
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.4e-42 174.9 103 80.6
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 4.4e-42 174.5 103 77.7
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 7.5e-42 173.7 103 76.7
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 1.3e-41 172.9 97 86.6
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.9e-41 171.0 103 80.6
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.9e-41 171.0 103 80.6
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 4.1e-40 167.9 103 76.7
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 5.4e-40 167.5 103 77.7
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 5.4e-40 167.5 103 76.7
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 7.0e-40 167.2 103 76.7
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 7.0e-40 167.2 103 77.7
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 1.2e-39 166.4 103 76.7
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 1.6e-39 166.0 101 79.2
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 1.6e-39 166.0 103 76.7
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 2.0e-39 165.6 103 76.7
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 2.7e-39 165.2 103 76.7
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 2.7e-39 165.2 103 74.8
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 4.5e-39 164.5 103 75.7
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 4.5e-39 164.5 103 74.8
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 5.9e-39 164.1 97 78.4
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 5.9e-39 164.1 103 74.8
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 5.9e-39 164.1 102 72.5
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 5.9e-39 164.1 103 74.8
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 5.9e-39 164.1 103 74.8
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 7.8e-39 163.7 103 73.8
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 7.8e-39 163.7 103 75.7
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 1.0e-38 163.3 98 78.6
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 1.0e-38 163.3 103 75.7
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 1.0e-38 163.3 103 75.7
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 1.3e-38 162.9 100 77.0
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.7e-38 162.5 100 75.0
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 2.3e-38 162.2 103 74.8
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 2.3e-38 162.2 103 75.7
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 2.9e-38 161.8 103 72.8
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 2.9e-38 161.8 100 74.0
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.9e-38 161.8 100 74.0
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.9e-38 161.8 100 74.0
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 2.9e-38 161.8 103 75.7
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 3.8e-38 161.4 103 75.7
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 3.8e-38 161.4 100 75.0
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 3.8e-38 161.4 100 76.0
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 5.0e-38 161.0 95 82.1
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 6.6e-38 160.6 103 74.8
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 1.1e-37 159.8 103 75.7
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 1.5e-37 159.5 103 70.9
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 1.5e-37 159.5 103 74.8
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 1.9e-37 159.1 95 80.0
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 2.5e-37 158.7 98 76.5
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 3.3e-37 158.3 97 76.3
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 5.6e-37 157.5 103 74.8
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 5.6e-37 157.5 97 78.4
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 5.6e-37 157.5 100 77.0
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 5.6e-37 157.5 100 73.0
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 7.3e-37 157.1 103 75.7
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 7.3e-37 157.1 97 76.3
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 7.3e-37 157.1 97 76.3
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 9.5e-37 156.8 98 77.6
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 1.2e-36 156.4 103 69.9
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 1.2e-36 156.4 103 71.8
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 1.2e-36 156.4 103 69.9
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 1.6e-36 156.0 97 76.3
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 1.6e-36 156.0 103 72.8
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 2.1e-36 155.6 97 77.3
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 2.1e-36 155.6 97 75.3
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 4.7e-36 154.5 97 78.4
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 4.7e-36 154.5 97 75.3
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 4.7e-36 154.5 97 77.3
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 4.7e-36 154.5 103 70.9
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 6.1e-36 154.1 97 76.3
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 6.1e-36 154.1 103 71.8
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 6.1e-36 154.1 103 68.0
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 8.0e-36 153.7 102 69.6
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 8.0e-36 153.7 93 78.5
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 8.0e-36 153.7 97 72.2
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 1.0e-35 153.3 96 76.0
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 1.4e-35 152.9 103 71.8
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 1.4e-35 152.9 103 71.8
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 1.4e-35 152.9 103 67.0
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 1.4e-35 152.9 97 73.2
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 1.8e-35 152.5 103 69.9
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 4.0e-35 151.4 96 76.0
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 6.8e-35 150.6 97 70.1
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 8.9e-35 150.2 97 75.3
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 1.5e-34 149.4 103 68.0
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 2.0e-34 149.1 97 69.1
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 4.4e-34 147.9 103 70.9
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 7.5e-34 147.1 103 69.9
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 1.3e-33 146.4 98 71.4
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 2.9e-33 145.2 131 59.5
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 2.4e-32 142.1 94 74.5
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 2.4e-32 142.1 93 75.3
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 9.2e-32 140.2 93 73.1
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 5.9e-31 137.5 92 72.8
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 3.0e-30 135.2 97 66.0
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 3.9e-30 134.8 78 84.6
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 8.6e-30 133.7 132 54.5
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 2.5e-29 132.1 103 62.1
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 4.3e-29 131.3 94 67.0
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 1.2e-28 129.8 76 84.2
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 1.2e-28 129.8 91 69.2
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 8.0e-28 127.1 100 61.0
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 1.4e-27 126.3 93 63.4
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 2.3e-27 125.6 105 61.0
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 3.1e-27 125.2 86 72.1
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 1.2e-26 123.2 96 58.3
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 3.4e-26 121.7 76 78.9
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 4.9e-25 117.9 89 60.7
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.9e-25 117.9 70 82.9
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 6.4e-25 117.5 77 72.7
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 1.1e-24 116.7 98 59.2
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 1.4e-24 116.3 92 62.0
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.1e-24 114.8 70 81.4
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 3.5e-23 111.7 73 72.6
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 3.0e-22 108.6 98 59.2
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 3.3e-21 105.1 79 63.3
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 2.0e-18 95.9 94 57.4
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 2.0e-18 95.9 102 53.9
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 2.2e-17 92.4 58 74.1
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 3.5e-15 85.1 50 82.0
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 8.1e-12 73.9 79 54.4
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 8.9e-11 70.5 45 68.9
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 8.9e-11 70.5 91 42.9
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 3.8e-09 65.1 42 64.3
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 4.9e-09 64.7 45 71.1


User provided reference genes

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