Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 7.1e-281 969.9 481 100.0
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 2.2e-210 735.7 511 74.0
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 2.3e-199 699.1 516 70.7
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 5.2e-199 698.0 513 70.8
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.2e-199 698.0 501 72.7
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.2e-199 698.0 501 72.5
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 5.7e-198 694.5 509 69.9
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.2e-195 686.8 518 68.7
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 1.6e-195 686.4 516 68.6
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 1.3e-194 683.3 513 69.4
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.7e-194 682.9 515 68.3
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.5e-193 679.9 515 68.0
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.9e-193 679.5 515 68.9
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 9.5e-193 677.2 513 69.2
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.6e-192 676.4 515 68.7
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 2.1e-192 676.0 513 69.0
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 4.7e-192 674.9 507 67.9
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 4.7e-192 674.9 516 68.2
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 8.0e-192 674.1 512 68.4
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 1.0e-191 673.7 453 75.7
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 1.4e-191 673.3 514 68.3
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 1.8e-191 672.9 510 68.2
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.8e-191 672.9 508 68.5
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 3.0e-191 672.2 512 67.6
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 6.8e-191 671.0 512 68.6
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 6.8e-191 671.0 508 68.5
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.0e-190 669.5 513 68.0
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 3.4e-190 668.7 513 67.3
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.3e-189 666.8 507 68.4
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 3.7e-189 665.2 513 68.6
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 2.4e-188 662.5 512 66.2
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 2.4e-188 662.5 455 75.2
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 5.4e-188 661.4 510 66.3
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.2e-187 660.2 512 66.4
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 2.3e-186 656.0 510 65.9
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 2.3e-186 656.0 512 63.9
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.3e-186 656.0 509 67.2
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 2.9e-186 655.6 511 66.5
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 3.9e-186 655.2 517 66.5
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 5.0e-186 654.8 514 66.0
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.5e-185 652.5 515 67.2
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 4.3e-185 651.7 509 65.6
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 5.6e-185 651.4 511 65.4
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 7.3e-185 651.0 511 65.2
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 7.3e-185 651.0 517 66.2
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 9.5e-185 650.6 509 65.4
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 1.6e-184 649.8 507 66.1
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 2.8e-184 649.0 505 66.5
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 3.6e-184 648.7 522 65.9
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 8.0e-184 647.5 511 66.3
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 1.8e-183 646.4 515 65.4
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 4.0e-183 645.2 513 65.3
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 5.2e-183 644.8 511 65.2
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 5.2e-183 644.8 509 66.0
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 5.2e-183 644.8 548 62.2
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 1.2e-182 643.7 527 62.4
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.5e-182 643.3 513 64.5
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 2.0e-182 642.9 508 65.7
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 2.0e-182 642.9 508 65.7
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 2.0e-182 642.9 513 64.9
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.0e-182 642.9 453 72.4
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 2.6e-182 642.5 504 65.7
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 2.6e-182 642.5 507 65.7
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 3.4e-182 642.1 505 65.9
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 5.8e-182 641.3 505 65.5
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 5.8e-182 641.3 507 65.5
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 5.8e-182 641.3 507 65.5
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 5.8e-182 641.3 508 65.6
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 5.8e-182 641.3 507 65.7
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 5.8e-182 641.3 510 65.3
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 7.5e-182 641.0 504 65.7
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 7.5e-182 641.0 506 65.6
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.3e-181 640.2 510 65.3
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 1.3e-181 640.2 509 66.8
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 1.7e-181 639.8 508 65.6
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 2.2e-181 639.4 504 65.7
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 2.2e-181 639.4 511 65.6
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 3.7e-181 638.6 504 65.3
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 8.3e-181 637.5 507 64.9
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 8.3e-181 637.5 508 64.2
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 3.2e-180 635.6 508 65.2
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 5.4e-180 634.8 515 63.9
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 9.2e-180 634.0 513 65.5
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.2e-179 633.6 507 64.7
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 7.8e-179 630.9 549 61.2
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.3e-178 630.2 445 71.0
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 2.3e-178 629.4 511 64.2
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 3.9e-178 628.6 549 61.2
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 1.1e-177 627.1 537 63.9
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 3.3e-177 625.5 514 62.5
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 3.3e-177 625.5 477 67.7
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 1.2e-176 623.6 449 69.5
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 8.0e-176 620.9 504 64.7
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 1.1e-175 620.5 518 63.1
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.2e-175 618.2 500 65.0
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.2e-174 617.1 601 56.6
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 4.4e-174 615.1 515 63.7
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.8e-174 614.8 513 63.5
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.8e-174 614.0 512 64.1
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 2.9e-173 612.5 514 61.9
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.2e-172 609.0 508 64.4
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 5.4e-172 608.2 480 65.6
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.2e-171 607.1 508 64.2
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 4.6e-171 605.1 510 62.4
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.0e-170 604.0 538 60.8
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 2.3e-170 602.8 478 65.3
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 5.6e-169 598.2 504 62.5
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 4.7e-168 595.1 517 62.1
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 1.5e-166 590.1 423 70.4
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 2.6e-166 589.3 510 61.8
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 7.5e-166 587.8 514 60.1
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 2.2e-165 586.3 584 54.8
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.1e-164 582.0 512 62.1
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.6e-163 580.1 450 65.3
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.7e-163 579.3 512 61.7
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 6.0e-163 578.2 514 60.1
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.3e-162 577.0 402 73.9
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.3e-162 577.0 464 64.7
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 5.1e-162 575.1 568 56.7
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.9e-161 573.2 511 59.1
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 8.9e-159 564.3 513 58.1
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 3.5e-155 552.4 451 64.3
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 3.1e-151 539.3 471 62.0
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 4.4e-150 535.4 407 68.6
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 2.4e-143 513.1 486 57.8
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 2.6e-142 509.6 415 61.4
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 1.1e-140 504.2 457 55.8
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 3.3e-137 492.7 549 49.2
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.4e-135 487.3 453 58.7
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 6.2e-128 461.8 662 43.2
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 9.0e-127 458.0 429 59.9
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 5.9e-118 428.7 275 78.5
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.6e-107 392.9 278 73.0
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.4e-103 380.9 279 68.5
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 1.1e-100 371.3 343 57.4
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.8e-88 330.1 243 69.1
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 6.5e-85 318.9 255 63.5
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 1.5e-81 307.8 260 60.0
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 5.6e-60 236.1 503 31.6
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 7.5e-57 225.7 212 58.0
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 3.2e-55 220.3 389 37.0
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 1.5e-52 211.5 219 56.2
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.2e-49 201.8 350 40.0
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 2.8e-43 180.6 135 66.7
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 9.9e-41 172.2 188 51.6
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.3e-35 155.2 106 73.6
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.9e-34 149.4 244 41.0
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.0e-33 147.9 244 40.6
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 7.6e-33 146.0 248 36.7
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.2e-30 138.7 121 61.2
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 7.4e-28 129.4 68 88.2
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.9e-23 114.8 63 88.9
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 4.3e-20 103.6 165 32.1
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 7.9e-14 82.8 71 63.4
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 1.3e-13 82.0 113 40.7
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.1e-12 79.0 82 51.2
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.9e-12 78.2 114 43.9
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.2e-08 64.7 36 86.1
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.2e-07 60.8 36 75.0
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 5.5e-07 60.1 85 40.0
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.5e-06 57.4 104 38.5


User provided reference genes

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