Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G24801 Striga asiatica HOM05D007410 ORTHO05D009500 2.3e-159 567.0 814 100.0
SGA_v2.0_scaffold40G15416 Striga asiatica HOM05D007410 ORTHO05D009500 1.0e-61 242.7 164 78.0
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 7.8e-46 189.9 188 48.9
Peaxi162Scf00802g00013 Petunia axillaris HOM05D007410 ORTHO05D009500 1.4e-42 179.1 200 50.5
Migut.J00989 Erythranthe guttata HOM05D007410 ORTHO05D009500 1.1e-39 169.5 156 58.3
Nitab4.5_0026813g0010 Nicotiana tabacum HOM05D007410 ORTHO05D009500 1.8e-34 152.1 167 50.9
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 6.8e-34 150.2 215 39.5
Nitab4.5_0005621g0120 Nicotiana tabacum HOM05D007410 ORTHO05D009500 8.9e-34 149.8 167 50.9
Nitab4.5_0001290g0100 Nicotiana tabacum HOM05D007410 ORTHO05D009500 1.5e-33 149.1 167 49.7
MD14G1014400 Malus domestica HOM05D007410 ORTHO05D009500 1.1e-31 142.9 178 42.7
Oeu058028.1 Olea europaea HOM05D007410 ORTHO05D009500 5.4e-31 140.6 133 53.4
Cfa016527 Carpinus fangiana HOM05D007410 ORTHO05D009500 2.7e-30 138.3 202 39.1
FAN14G2442 Fragaria x ananassa HOM05D007410 ORTHO05D009500 1.0e-29 136.3 175 44.0
FAN02G1401 Fragaria x ananassa HOM05D007410 ORTHO05D009500 1.3e-29 136.0 176 43.2
FvH4_6g17750 Fragaria vesca HOM05D007410 ORTHO05D009500 1.7e-29 135.6 176 43.2
Sopen12g034470 Solanum pennellii HOM05D007410 ORTHO05D009500 2.3e-29 135.2 149 51.0
Solyc12g099840.1 Solanum lycopersicum HOM05D007410 ORTHO05D009500 6.6e-29 133.7 156 50.0
PGSC0003DMG400004719 Solanum tuberosum HOM05D007410 ORTHO05D009500 6.6e-29 133.7 149 51.0
HanXRQChr17g0534281 Helianthus annuus HOM05D007410 ORTHO05D009500 5.6e-28 130.6 201 40.3
FAN09G1720 Fragaria x ananassa HOM05D007410 ORTHO05D009500 2.1e-27 128.6 175 42.3
Cc06_g05130 Coffea canephora HOM05D007410 ORTHO05D009500 8.9e-26 123.2 131 50.4
FAN05G1927 Fragaria x ananassa HOM05D007410 ORTHO05D009500 8.9e-26 123.2 175 41.1
DCAR_020784 Daucus carota HOM05D007410 ORTHO05D009500 7.5e-25 120.2 150 46.7
HanXRQChr17g0535541 Helianthus annuus HOM05D007410 ORTHO05D009500 4.9e-24 117.5 197 38.1
MD12G1016300 Malus domestica HOM05D007410 ORTHO05D009500 4.9e-24 117.5 159 40.3
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 8.3e-24 116.7 184 34.8
AL6G44470 Arabidopsis lyrata HOM05D007410 ORTHO05D009500 8.3e-24 116.7 115 50.4
RcHm_v2.0_Chr3g0471971 Rosa chinensis HOM05D007410 ORTHO05D009500 1.4e-23 115.9 202 39.1
Eucgr.A01557 Eucalyptus grandis HOM05D007410 ORTHO05D009500 9.2e-23 113.2 165 40.0
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 1.0e-21 109.8 221 36.7
DCAR_013956 Daucus carota HOM05D007410 ORTHO05D009500 3.0e-21 108.2 195 36.4
TWI60G0552 Tripterygium wilfordii HOM05D007410 ORTHO05D009500 1.9e-20 105.5 150 40.0
CAN.G575.91 Capsicum annuum HOM05D007410 ORTHO05D009500 4.3e-20 104.4 139 42.4
QL02p025248 Quercus lobata HOM05D007410 ORTHO05D009500 1.6e-19 102.4 153 40.5
Atru.chr12.1036 Acer truncatum HOM05D007410 ORTHO05D009500 2.8e-19 101.7 137 38.7
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 3.1e-18 98.2 179 36.9
Haze_19526 Corylus avellana HOM05D007410 ORTHO05D009500 6.8e-18 97.1 178 35.4
Dinv34010 Davidia involucrata HOM05D007410 ORTHO05D009500 2.6e-17 95.1 153 38.6
Aa31LG3G15130 Aethionema arabicum HOM05D007410 ORTHO05D009500 4.4e-17 94.4 205 32.7
Carub.0006s1061 Capsella rubella HOM05D007410 ORTHO05D009500 4.4e-17 94.4 175 36.0
PSO135G0775 Papaver somniferum HOM05D025533 ORTHO05D021545 2.9e-16 91.7 96 45.8
BolC9t59308H Brassica oleracea HOM05D007410 ORTHO05D009500 3.8e-16 91.3 180 33.9
Glyma.03G190300 Glycine max HOM05D007410 ORTHO05D009500 4.9e-16 90.9 137 38.7
Sp6g31520 Schrenkiella parvula HOM05D007410 ORTHO05D009500 8.4e-16 90.1 178 33.7
VMungo1383G0444 Vigna mungo HOM05D007410 ORTHO05D009500 8.4e-16 90.1 158 33.5
Atru.BG.129.p Acer truncatum HOM05D007410 ORTHO05D009500 3.2e-15 88.2 129 38.0
MELO3C006839.2 Cucumis melo HOM05D007410 ORTHO05D009500 4.2e-15 87.8 164 33.5
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 4.2e-15 87.8 110 45.5
ClCG05G007520 Citrullus lanatus HOM05D007410 ORTHO05D009500 2.1e-14 85.5 152 33.6
Phvul.001G185900 Phaseolus vulgaris HOM05D007410 ORTHO05D009500 2.1e-14 85.5 152 34.2
CsaV3_3G016400 Cucumis sativus L. HOM05D007410 ORTHO05D009500 2.7e-14 85.1 165 32.7
PSO384G3142 Papaver somniferum HOM05D025533 ORTHO05D021545 3.5e-14 84.7 96 43.8
BraA10t44635Z Brassica rapa HOM05D007410 ORTHO05D009500 4.6e-14 84.3 177 31.6
A10p25700 Brassica napus HOM05D007410 ORTHO05D009500 7.8e-14 83.6 176 31.2
C09p64770 Brassica napus HOM05D007410 ORTHO05D009500 1.3e-13 82.8 151 32.5
ECA233G1087 Erigeron canadensis HOM05D001398 ORTHO05D001467 1.3e-13 82.8 93 49.5
Sc18g0006010 Simmondsia chinensis HOM05D007410 ORTHO05D009500 3.0e-13 81.6 166 36.7
Hma1.2p1_0084F.1_g043130 Hydrangea macrophylla HOM05D007410 ORTHO05D009500 3.9e-13 81.3 124 36.3
Sed0018174 Sechium edule HOM05D007410 ORTHO05D009500 5.1e-13 80.9 166 32.5
Rhsim03G0082200 Rhododendron simsii HOM05D007410 ORTHO05D009500 6.6e-13 80.5 169 30.2
TAR365G0607 Trochodendron aralioides HOM05D007410 ORTHO05D009500 1.1e-12 79.7 116 36.2
Potri.010G249800 Populus trichocarpa HOM05D007410 ORTHO05D009500 3.3e-12 78.2 158 31.6
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 4.3e-12 77.8 187 29.4
Zm00001eb167210 Zea mays HOM05D022935 ORTHO05D020958 5.6e-12 77.4 225 30.7
BcaNung06328 Brassica carinata HOM05D007410 ORTHO05D009500 9.6e-12 76.6 179 31.8
Zm00001eb178770 Zea mays HOM05D022935 ORTHO05D020958 1.6e-11 75.9 197 32.0
Glyma.19G190667 Glycine max HOM05D007410 ORTHO05D009500 2.8e-11 75.1 125 36.0
TPR.G28359 Trifolium pratense HOM05D007410 ORTHO05D009500 6.2e-11 73.9 190 29.5
Migut.A01169 Erythranthe guttata HOM05D007410 ORTHO05D009500 1.1e-10 73.2 52 59.6
Thhalv10015810m.g Eutrema salsugineum HOM05D007410 ORTHO05D009500 3.1e-10 71.6 92 39.1
PGR004G1775 Punica granatum HOM05D007410 ORTHO05D009500 4.0e-10 71.2 120 34.2
CARHR201020 Cardamine hirsuta HOM05D007410 ORTHO05D009500 5.3e-10 70.9 161 32.3
Lj9E304T4 Lonicera japonica HOM05D007410 ORTHO05D009500 1.5e-09 69.3 141 30.5
Psat2g007640 Pisum sativum HOM05D007410 ORTHO05D009500 2.6e-09 68.6 168 29.2
Nn8g41098 Nelumbo nucifera HOM05D002825 ORTHO05D003824 3.4e-09 68.2 165 24.8
Actinidia39878 Actinidia chinensis HOM05D007410 ORTHO05D009500 5.8e-09 67.4 58 48.3
Medtr7g103600 Medicago truncatula HOM05D007410 ORTHO05D009500 1.3e-08 66.2 145 30.3
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 2.2e-08 65.5 128 30.5
Medtr1g039290 Medicago truncatula HOM05D010072 ORTHO05D011797 4.9e-08 64.3 114 32.5
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 4.9e-08 64.3 133 30.8
MD04G1014300 Malus domestica HOM05D000162 ORTHO05D000090 6.4e-08 63.9 149 28.9
QL02p039304 Quercus lobata HOM05D004783 ORTHO05D005581 6.4e-08 63.9 119 31.9
SMO196G0165 Selaginella moellendorffii HOM05D005973 ORTHO05D007285 8.4e-08 63.5 167 28.1
CSS0048951 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 1.1e-07 63.2 128 24.2
HanXRQChr13g0418851 Helianthus annuus HOM05D000162 ORTHO05D000090 1.1e-07 63.2 138 26.1
Potri.001G236800 Populus trichocarpa HOM05D007212 ORTHO05D009094 1.1e-07 63.2 139 28.1
Rhsim03G0204200 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.1e-07 63.2 135 24.4
Thecc.05G080100 Theobroma cacao HOM05D007410 ORTHO05D009500 1.1e-07 63.2 52 51.9
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 1.4e-07 62.8 130 27.7
GSVIVG01023159001 Vitis vinifera HOM05D002825 ORTHO05D003824 1.4e-07 62.8 165 23.0
Lj7A250T23 Lonicera japonica HOM05D002986 ORTHO05D007611 1.9e-07 62.4 121 29.8
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 2.4e-07 62.0 107 29.0
QL03p008874 Quercus lobata HOM05D004783 ORTHO05D005581 2.4e-07 62.0 119 31.1
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 3.2e-07 61.6 92 32.6
Migut.F00916 Erythranthe guttata HOM05D000162 ORTHO05D000090 3.2e-07 61.6 119 29.4
Migut.M00051 Erythranthe guttata HOM05D000162 ORTHO05D000090 3.2e-07 61.6 113 29.2
Gohir.D01G198900 Gossypium hirsutum HOM05D007410 ORTHO05D009500 3.2e-07 61.6 152 33.6
Gorai.002G243300 Gossypium raimondii HOM05D007410 ORTHO05D009500 3.2e-07 61.6 152 33.6
Nn8g39918 Nelumbo nucifera HOM05D007410 ORTHO05D009500 3.2e-07 61.6 186 30.6
GSVIVG01005577001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.2e-07 61.6 134 21.6
GSVIVG01006104001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.2e-07 61.6 134 21.6
GSVIVG01006121001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.2e-07 61.6 134 21.6
Haze_13937 Corylus avellana HOM05D000001 ORTHO05D007291 4.2e-07 61.2 102 37.3
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 4.2e-07 61.2 134 29.1
Oeu041026.1 Olea europaea HOM05D007212 ORTHO05D009094 4.2e-07 61.2 122 29.5
Lalb_Chr04g0249471 Lupinus albus HOM05D004783 ORTHO05D005581 5.4e-07 60.8 115 27.0
Actinidia05344 Actinidia chinensis HOM05D007172 ORTHO05D018188 7.1e-07 60.5 129 37.2
CSS0017456 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 7.1e-07 60.5 128 23.4
CSS0029141 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 7.1e-07 60.5 128 23.4
Lj7A254T21 Lonicera japonica HOM05D002986 ORTHO05D007611 7.1e-07 60.5 121 28.9
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 7.1e-07 60.5 107 27.1
SGA_v2.0_scaffold225G43016 Striga asiatica HOM05D000162 ORTHO05D000090 7.1e-07 60.5 116 29.3
arahy.Tifrunner.gnm1.ann1.0V2A2H Arachis hypogaea HOM05D007212 ORTHO05D009094 9.3e-07 60.1 121 30.6
EL10Ac1g00861 Beta vulgaris HOM05D007410 ORTHO05D009500 9.3e-07 60.1 129 32.6
AUR62013683 Chenopodium quinoa HOM05D007410 ORTHO05D009500 9.3e-07 60.1 124 33.9
Oeu024268.1 Olea europaea HOM05D000104 ORTHO05D009920 9.3e-07 60.1 99 33.3
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 9.3e-07 60.1 98 31.6
TAR376G0418 Trochodendron aralioides HOM05D002825 ORTHO05D003824 9.3e-07 60.1 154 26.0
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 9.3e-07 60.1 107 27.1
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 1.2e-06 59.7 176 25.6
Migut.F00855 Erythranthe guttata HOM05D000162 ORTHO05D000090 1.2e-06 59.7 117 27.4
Nitab4.5_0001775g0060 Nicotiana tabacum HOM05D005973 ORTHO05D007285 1.2e-06 59.7 126 27.0
SEGI_06165 Sequoiadendron giganteum HOM05D007655 ORTHO05D009698 1.2e-06 59.7 122 31.1
PGSC0003DMG400020556 Solanum tuberosum HOM05D000162 ORTHO05D000090 1.2e-06 59.7 99 32.3
Aqoxy1G01943 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.6e-06 59.3 137 25.5
Aqoxy4G01651 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.6e-06 59.3 137 25.5
Aqoxy4G01654 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.6e-06 59.3 137 25.5
arahy.Tifrunner.gnm1.ann1.C93D89 Arachis hypogaea HOM05D007212 ORTHO05D009094 1.6e-06 59.3 121 30.6
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 1.6e-06 59.3 168 23.8
Cc05_g10980 Coffea canephora HOM05D002453 ORTHO05D008746 1.6e-06 59.3 122 31.1
Dinv39608 Davidia involucrata HOM05D007410 ORTHO05D009500 1.6e-06 59.3 39 64.1
Nitab4.5_0000316g0260 Nicotiana tabacum HOM05D005973 ORTHO05D007285 1.6e-06 59.3 112 28.6
TPR.G17150 Trifolium pratense HOM05D007212 ORTHO05D009094 1.6e-06 59.3 121 28.9
TPR.G7494 Trifolium pratense HOM05D007750 ORTHO05D009803 1.6e-06 59.3 132 28.8
Eucgr.C02463 Eucalyptus grandis HOM05D005973 ORTHO05D007285 2.1e-06 58.9 156 28.2
Gohir.A01G210000 Gossypium hirsutum HOM05D007410 ORTHO05D009500 2.1e-06 58.9 155 32.9
Rhsim03G0202600 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.1e-06 58.9 134 23.1
Rhsim07G0073200 Rhododendron simsii HOM05D000162 ORTHO05D000090 2.1e-06 58.9 115 26.1
Thecc.01G038900 Theobroma cacao HOM05D000891 ORTHO05D000761 2.1e-06 58.9 122 29.5
Migut.F00854 Erythranthe guttata HOM05D000162 ORTHO05D000090 2.7e-06 58.5 117 27.4
Eucgr.C02304 Eucalyptus grandis HOM05D005973 ORTHO05D007285 2.7e-06 58.5 156 28.2
Gorai.001G138600 Gossypium raimondii HOM05D006556 ORTHO05D025699 2.7e-06 58.5 76 39.5
Ca_24987_v3 Cicer arietinum L. HOM05D006556 ORTHO05D008146 3.5e-06 58.2 105 29.5
Ciclev10000271m.g Citrus clementina HOM05D002825 ORTHO05D003824 3.5e-06 58.2 155 22.6
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 3.5e-06 58.2 145 26.2
HanXRQChr13g0418841 Helianthus annuus HOM05D000162 ORTHO05D000090 3.5e-06 58.2 130 24.6
Lalb_Chr02g0153641 Lupinus albus HOM05D000855 ORTHO05D008530 3.5e-06 58.2 107 28.0
Medtr6g022260 Medicago truncatula HOM05D007750 ORTHO05D009803 3.5e-06 58.2 129 30.2
PSO210G6432 Papaver somniferum HOM05D007155 ORTHO05D003034 3.5e-06 58.2 98 30.6
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 3.5e-06 58.2 114 29.8
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 4.6e-06 57.8 130 24.6
CDE01G0240 Ceratophyllum demersum HOM05D005862 ORTHO05D007731 4.6e-06 57.8 128 23.4
AUR62004183 Chenopodium quinoa HOM05D007410 ORTHO05D009500 4.6e-06 57.8 174 28.7
DCAR_019601 Daucus carota HOM05D002453 ORTHO05D008746 4.6e-06 57.8 129 26.4
Os06g0199100 Oryza sativa ssp. japonica HOM05D005862 ORTHO05D007731 4.6e-06 57.8 136 22.8
SalBow5G3658 Salvia bowleyana HOM05D006694 ORTHO05D008240 4.6e-06 57.8 113 31.9
SalBow5G5172 Salvia bowleyana HOM05D006694 ORTHO05D008240 4.6e-06 57.8 113 31.9
Solyc01g068180.3 Solanum lycopersicum HOM05D005973 ORTHO05D007285 4.6e-06 57.8 100 30.0
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 6.0e-06 57.4 104 28.8
Migut.F00914 Erythranthe guttata HOM05D000162 ORTHO05D000090 6.0e-06 57.4 117 28.2
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 6.0e-06 57.4 130 25.4
Lalb_Chr01g0001381 Lupinus albus HOM05D007212 ORTHO05D009094 6.0e-06 57.4 121 28.9
Lalb_Chr01g0006871 Lupinus albus HOM05D002453 ORTHO05D008746 6.0e-06 57.4 129 29.5
Peaxi162Scf00087g00126 Petunia axillaris HOM05D005973 ORTHO05D007285 6.0e-06 57.4 158 27.2
Psat1g083360 Pisum sativum HOM05D007750 ORTHO05D009803 6.0e-06 57.4 132 28.0
THA.LOC104798434 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 6.0e-06 57.4 100 30.0
Aa31LG9G10670 Aethionema arabicum HOM05D007750 ORTHO05D009803 7.8e-06 57.0 157 26.1
Ah.05g174660 Amaranthus hybridus HOM05D007410 ORTHO05D009500 7.8e-06 57.0 60 43.3
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 7.8e-06 57.0 127 23.6
AagrBONN_evm.TU.Sc2ySwM_117.911 Anthoceros agrestis HOM05D007128 ORTHO05D002107 7.8e-06 57.0 99 33.3
MSTRG.12243 Avicennia marina HOM05D000001 ORTHO05D000003 7.8e-06 57.0 95 31.6
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 7.8e-06 57.0 128 26.6
Migut.F00849 Erythranthe guttata HOM05D000162 ORTHO05D000090 7.8e-06 57.0 111 27.9
HanXRQChr03g0090831 Helianthus annuus HOM05D000162 ORTHO05D000090 7.8e-06 57.0 117 26.5
Lj1g0020401 Lotus japonicus HOM05D005362 ORTHO05D006895 7.8e-06 57.0 129 28.7
MBI17_g15295_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 7.8e-06 57.0 134 25.4
TAR273G0002 Trochodendron aralioides HOM05D000001 ORTHO05D000003 7.8e-06 57.0 139 28.1
TAR369G0003 Trochodendron aralioides HOM05D000001 ORTHO05D000003 7.8e-06 57.0 139 28.1
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 7.8e-06 57.0 129 24.0


User provided reference genes

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