Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 3.2e-167 591.7 294 100.0
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 1.9e-111 406.4 310 70.3
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 3.2e-111 405.6 306 69.9
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 3.0e-109 399.1 307 68.7
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 4.4e-108 395.2 272 73.9
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 9.8e-108 394.0 268 73.5
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.2e-107 392.9 269 73.6
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 3.1e-106 389.0 299 66.6
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 5.4e-106 388.3 271 71.6
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 5.4e-106 388.3 272 71.7
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 7.0e-106 387.9 269 72.9
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 1.2e-105 387.1 305 64.6
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 2.0e-105 386.3 301 65.4
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 2.7e-105 386.0 269 72.1
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 3.5e-105 385.6 269 72.1
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 4.5e-105 385.2 268 72.0
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 4.5e-105 385.2 268 72.0
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 5.9e-105 384.8 263 73.4
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.0e-104 384.0 269 71.7
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.3e-104 383.6 263 73.0
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 2.3e-104 382.9 275 69.8
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 2.9e-104 382.5 267 72.7
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 3.8e-104 382.1 269 72.1
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 5.0e-104 381.7 275 69.5
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 1.1e-103 380.6 275 69.5
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 2.5e-103 379.4 261 72.8
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 3.3e-103 379.0 271 70.5
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 5.6e-103 378.3 275 69.1
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 9.5e-103 377.5 266 71.4
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 9.5e-103 377.5 269 72.1
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 1.2e-102 377.1 271 70.5
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.2e-102 377.1 278 68.0
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.2e-102 377.1 269 70.6
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.2e-102 377.1 270 70.4
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 1.2e-102 377.1 273 69.6
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 2.1e-102 376.3 271 69.4
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 2.8e-102 375.9 268 70.5
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 2.8e-102 375.9 280 69.6
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 3.6e-102 375.6 269 69.5
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 6.1e-102 374.8 272 69.5
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 6.1e-102 374.8 295 66.4
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 6.1e-102 374.8 295 66.4
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.4e-101 373.6 276 67.0
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 4.0e-101 372.1 270 69.6
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 6.8e-101 371.3 268 70.1
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 1.5e-100 370.2 272 69.5
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.5e-100 370.2 277 67.5
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 2.6e-100 369.4 267 70.8
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 4.4e-100 368.6 268 69.4
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 9.8e-100 367.5 264 71.2
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 2.9e-99 365.9 267 67.8
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 2.9e-99 365.9 269 69.9
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 3.7e-99 365.5 272 68.8
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 6.4e-99 364.8 264 70.8
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 6.4e-99 364.8 258 71.3
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 6.4e-99 364.8 258 71.3
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 8.3e-99 364.4 267 68.5
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.1e-98 364.0 301 62.1
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 1.1e-98 364.0 235 76.2
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.4e-98 363.6 301 62.5
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 1.4e-98 363.6 266 69.5
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.8e-98 363.2 305 61.3
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 4.1e-98 362.1 288 64.6
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 4.1e-98 362.1 267 68.9
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 1.2e-97 360.5 267 68.2
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 1.6e-97 360.1 261 69.3
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 2.0e-97 359.8 260 69.6
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 2.7e-97 359.4 307 62.2
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 2.7e-97 359.4 265 69.8
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 5.9e-97 358.2 264 67.8
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 5.9e-97 358.2 264 68.2
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 1.0e-96 357.5 260 68.8
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.0e-96 357.5 298 62.1
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 1.7e-96 356.7 266 67.7
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 1.7e-96 356.7 264 67.4
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 1.7e-96 356.7 260 69.2
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 3.0e-96 355.9 258 69.4
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 1.1e-95 354.0 307 61.2
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 1.1e-95 354.0 263 66.9
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 1.9e-95 353.2 258 69.0
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 1.9e-95 353.2 253 71.9
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 2.5e-95 352.8 258 69.4
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 2.5e-95 352.8 258 69.4
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 3.3e-95 352.4 269 68.0
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 9.5e-95 350.9 263 66.2
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 1.6e-94 350.1 257 68.9
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 1.6e-94 350.1 281 64.1
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 2.8e-94 349.4 258 68.6
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 6.2e-94 348.2 261 66.3
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 1.0e-93 347.4 261 67.4
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 5.2e-93 345.1 296 61.8
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 3.4e-92 342.4 268 65.3
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 7.5e-92 341.3 275 61.5
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 2.9e-91 339.3 257 65.4
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 3.7e-91 339.0 264 65.9
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 1.7e-88 330.1 257 63.8
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 5.0e-88 328.6 270 64.8
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.5e-87 327.0 255 63.9
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 1.9e-87 326.6 262 64.9
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 5.6e-87 325.1 252 67.5
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 1.2e-86 323.9 233 70.4
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 8.1e-86 321.2 252 65.5
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 1.1e-85 320.9 249 65.9
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.0e-84 316.6 337 52.8
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 1.3e-83 313.9 241 66.8
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 8.3e-83 311.2 264 61.0
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 1.4e-82 310.5 229 71.2
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.2e-81 307.4 234 64.5
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 2.1e-81 306.6 265 60.4
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 4.3e-79 298.9 262 61.1
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.6e-78 297.0 234 63.7
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 2.8e-78 296.2 213 68.5
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 1.2e-76 290.8 260 58.1
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 6.4e-75 285.0 211 67.8
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 1.9e-74 283.5 263 55.5
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 4.6e-73 278.9 266 56.4
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 6.0e-73 278.5 262 57.6
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 2.0e-68 263.5 247 58.7
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 5.8e-68 261.9 208 66.3
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 7.6e-68 261.5 267 53.9
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 9.9e-68 261.2 237 59.5
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 7.1e-66 255.0 258 55.0
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 7.1e-66 255.0 154 79.9
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 6.6e-64 248.4 156 78.8
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 8.1e-62 241.5 154 76.0
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 3.8e-59 232.6 140 79.3
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 3.0e-56 223.0 162 70.4
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.8e-54 216.5 188 59.6
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.6e-52 209.9 188 57.4
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.2e-49 201.1 114 83.3
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 2.1e-49 200.3 121 80.2
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 2.1e-49 200.3 121 80.2
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 6.0e-49 198.7 114 82.5
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.0e-48 198.0 188 57.4
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 3.0e-48 196.4 150 68.0
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 9.0e-45 184.9 260 40.8
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 1.2e-44 184.5 159 61.0
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 5.8e-44 182.2 170 57.6
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 7.1e-42 175.3 289 40.5
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.6e-38 164.1 142 60.6
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 8.5e-35 151.8 152 52.0
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.5e-31 141.0 104 68.3
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 4.3e-31 139.4 176 44.3
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 9.7e-31 138.3 85 77.6
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.1e-29 134.8 112 60.7
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 2.4e-29 133.7 92 67.4
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 1.1e-26 124.8 77 80.5
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 9.4e-26 121.7 91 64.8
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 2.3e-24 117.1 79 72.2
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 3.9e-24 116.3 78 71.8
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 5.1e-24 115.9 72 76.4
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 4.1e-21 106.3 87 52.9
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 1.3e-19 101.3 62 75.8
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 2.1e-17 94.0 108 50.0
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 2.1e-17 94.0 108 50.0
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 4.7e-17 92.8 79 62.0
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 2.3e-16 90.5 70 61.4
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.5e-15 87.8 71 63.4
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 6.3e-14 82.4 46 82.6
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.7e-06 56.6 38 68.4
SEGI_21930 Sequoiadendron giganteum HOM05D004449 ORTHO05D386504 8.2e-06 55.5 39 66.7


User provided reference genes

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