Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 1.8e-235 818.9 434 100.0
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 2.5e-99 366.7 595 45.0
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 4.4e-96 355.9 435 52.9
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 2.9e-92 343.2 596 43.0
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 7.4e-88 328.6 571 39.9
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 5.3e-86 322.4 566 40.3
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 6.5e-84 315.5 601 38.6
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 2.1e-82 310.5 531 40.5
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 2.7e-82 310.1 574 39.9
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 8.0e-82 308.5 571 38.7
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 8.0e-82 308.5 576 37.8
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 1.8e-81 307.4 543 40.5
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.8e-81 307.4 566 38.7
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 6.8e-81 305.4 535 39.6
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 8.8e-81 305.1 595 38.2
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 1.5e-80 304.3 566 38.7
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 3.4e-80 303.1 564 38.3
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 5.7e-80 302.4 593 37.9
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 2.2e-79 300.4 539 39.3
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 3.7e-79 299.7 599 38.9
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 6.3e-79 298.9 598 37.6
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 3.1e-78 296.6 542 37.6
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 1.2e-77 294.7 551 38.3
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 4.5e-77 292.7 575 37.6
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.3e-76 291.2 577 37.4
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 5.0e-76 289.3 529 38.9
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.9e-75 287.3 531 38.8
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.9e-75 287.3 531 38.8
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.9e-75 287.3 550 36.4
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 2.5e-75 287.0 536 38.1
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 3.2e-75 286.6 565 40.7
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.2e-75 286.2 532 38.2
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 5.5e-75 285.8 525 38.7
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 2.1e-74 283.9 538 37.7
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 3.6e-74 283.1 511 39.5
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 4.7e-74 282.7 534 36.9
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 4.7e-74 282.7 525 37.9
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 6.1e-74 282.3 583 37.0
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 8.0e-74 282.0 562 36.5
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 2.3e-73 280.4 529 37.8
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 3.0e-73 280.0 537 37.2
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 4.0e-73 279.6 568 36.6
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.2e-72 278.1 536 37.3
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 2.0e-72 277.3 534 36.9
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 2.6e-72 276.9 578 35.8
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 2.6e-72 276.9 544 37.3
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 4.4e-72 276.2 580 35.7
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.3e-71 274.6 522 37.9
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 5.4e-70 269.2 597 34.7
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 9.1e-70 268.5 519 37.6
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 2.0e-69 267.3 649 34.7
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.7e-69 266.9 536 36.6
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 5.9e-69 265.8 536 37.3
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.3e-68 264.6 542 37.1
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.7e-68 264.2 546 36.1
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.7e-68 264.2 604 34.6
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 2.3e-68 263.8 546 36.1
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 4.2e-67 259.6 578 34.3
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 5.5e-67 259.2 550 36.0
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.2e-66 258.1 607 32.9
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.6e-66 257.7 506 36.6
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 4.7e-66 256.1 621 36.1
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 4.7e-66 256.1 570 33.9
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 6.1e-66 255.8 535 36.6
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 6.1e-66 255.8 523 34.8
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.4e-65 254.6 542 35.4
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.8e-65 254.2 566 34.1
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 3.0e-65 253.4 561 33.0
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 5.2e-65 252.7 564 33.9
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 8.9e-65 251.9 401 44.1
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 8.9e-65 251.9 535 35.5
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 8.9e-65 251.9 491 37.9
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 1.5e-64 251.1 563 34.1
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 2.0e-64 250.8 500 36.6
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 4.4e-64 249.6 580 33.6
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 9.8e-64 248.4 516 35.9
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.9e-63 246.9 509 37.9
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 4.9e-63 246.1 536 33.6
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 2.4e-62 243.8 525 34.9
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 5.4e-62 242.7 531 34.8
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 9.2e-62 241.9 524 34.4
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 9.2e-62 241.9 530 34.0
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.7e-61 240.4 566 33.0
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 4.6e-61 239.6 567 33.7
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.0e-60 238.4 575 33.6
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 1.3e-60 238.0 531 34.7
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 8.6e-60 235.3 526 33.5
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.5e-59 233.8 563 33.2
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 4.3e-59 233.0 555 34.2
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 1.2e-58 231.5 565 31.7
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 2.1e-58 230.7 563 32.3
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 1.0e-57 228.4 548 32.8
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 6.8e-57 225.7 532 34.4
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 8.9e-57 225.3 314 49.0
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 8.9e-57 225.3 540 31.5
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 2.0e-56 224.2 518 33.6
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 2.0e-56 224.2 569 31.8
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 9.8e-56 221.9 539 32.5
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 4.1e-54 216.5 550 32.5
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 7.0e-54 215.7 522 31.4
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.6e-53 214.5 523 31.7
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 2.0e-53 214.2 564 30.5
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 6.0e-53 212.6 534 31.6
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 3.3e-51 206.8 457 33.0
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 9.5e-51 205.3 571 30.1
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 2.1e-50 204.1 581 31.2
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.8e-50 203.8 418 36.6
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 6.2e-50 202.6 322 43.5
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.1e-49 201.8 477 30.8
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.1e-49 200.3 368 34.5
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 5.2e-49 199.5 535 32.5
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.1e-46 191.8 369 35.5
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 7.1e-46 189.1 522 30.7
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 9.2e-46 188.7 506 30.8
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.6e-45 188.0 115 77.4
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 1.3e-44 184.9 222 50.0
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 1.3e-44 184.9 574 28.9
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.1e-43 181.8 114 73.7
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 3.3e-43 180.3 263 45.6
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.6e-42 177.9 311 42.1
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.1e-42 177.6 113 75.2
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 2.1e-42 177.6 524 28.8
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 4.7e-42 176.4 113 75.2
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 4.0e-41 173.3 113 72.6
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 6.8e-41 172.6 113 73.5
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.5e-40 171.4 397 31.7
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 5.8e-40 169.5 114 70.2
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 6.4e-39 166.0 113 68.1
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.4e-38 164.9 284 41.2
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.4e-38 164.9 101 77.2
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.9e-38 164.5 101 76.2
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.4e-38 164.1 115 71.3
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 3.2e-38 163.7 101 76.2
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 4.1e-38 163.3 101 76.2
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 7.1e-38 162.5 104 71.2
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 9.2e-38 162.2 114 71.9
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 9.2e-38 162.2 114 71.9
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 9.2e-38 162.2 114 71.9
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 9.2e-38 162.2 114 71.9
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 9.2e-38 162.2 114 71.9
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.2e-37 161.8 103 73.8
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 1.2e-37 161.8 114 71.1
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.2e-37 161.8 101 76.2
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 4.6e-37 159.8 525 29.1
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 3.9e-36 156.8 552 30.1
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 6.6e-36 156.0 149 51.0
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 1.2e-34 151.8 101 74.3
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 1.2e-34 151.8 101 74.3
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 1.2e-34 151.8 101 74.3
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 1.2e-34 151.8 101 74.3
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.6e-34 151.4 263 39.9
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.4e-33 148.3 83 83.1
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.8e-33 147.9 282 36.9
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 1.2e-32 145.2 113 58.4
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 2.6e-32 144.1 308 35.7
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 4.9e-31 139.8 287 38.3
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 1.1e-30 138.7 105 61.0
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 3.9e-28 130.2 135 48.9
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 3.3e-27 127.1 78 71.8
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.8e-26 124.0 231 39.8
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 8.1e-26 122.5 113 54.0
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 2.4e-25 120.9 480 27.3
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 3.1e-25 120.6 145 48.3
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 2.0e-24 117.9 63 85.7
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 6.4e-23 112.8 238 36.1
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 2.4e-22 110.9 61 85.2
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 1.7e-20 104.8 71 67.6
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.2e-14 84.0 283 31.8
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 2.5e-11 74.3 172 35.5
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.2e-08 65.5 106 37.7
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 1.0e-07 62.4 57 47.4
BcaB02g07449 Brassica carinata HOM05D005323 ORTHO05D006820 5.5e-06 56.6 140 26.4


User provided reference genes

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