Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold74G24678 Striga asiatica HOM05D005753 ORTHO05D007034 3.8e-271 937.6 472 100.0
MSTRG.15152 Avicennia marina HOM05D005753 ORTHO05D007034 3.9e-66 256.5 537 36.7
Migut.M01771 Erythranthe guttata HOM05D005753 ORTHO05D007034 1.1e-63 248.4 548 36.7
Oeu007583.4 Olea europaea HOM05D005753 ORTHO05D007034 3.6e-51 206.8 605 33.1
RhsimUnG0251100 Rhododendron simsii HOM05D005753 ORTHO05D007034 2.6e-41 174.1 531 31.1
Dinv22267 Davidia involucrata HOM05D005753 ORTHO05D007034 5.3e-39 166.4 531 29.8
Atru.chr2.3344 Acer truncatum HOM05D005753 ORTHO05D007034 1.0e-37 162.2 552 29.2
Nitab4.5_0001913g0030 Nicotiana tabacum HOM05D005753 ORTHO05D007034 1.0e-37 162.2 527 31.3
PGSC0003DMG400022322 Solanum tuberosum HOM05D005753 ORTHO05D007034 1.0e-37 162.2 553 30.4
Actinidia35339 Actinidia chinensis HOM05D005753 ORTHO05D007034 1.3e-37 161.8 551 29.6
Actinidia10731 Actinidia chinensis HOM05D005753 ORTHO05D007034 5.0e-37 159.8 525 31.0
Peaxi162Scf00964g00029 Petunia axillaris HOM05D005753 ORTHO05D007034 4.2e-36 156.8 544 28.7
Solyc07g064550.3 Solanum lycopersicum HOM05D005753 ORTHO05D007034 4.2e-36 156.8 554 29.6
Manes.03G128700 Manihot esculenta HOM05D005753 ORTHO05D007034 1.2e-35 155.2 553 28.9
vmacro09719 Vaccinium macrocarpon HOM05D005753 ORTHO05D007034 2.1e-35 154.5 570 28.1
Sopen07g032730 Solanum pennellii HOM05D005753 ORTHO05D007034 2.7e-35 154.1 554 29.8
Ciclev10007877m.g Citrus clementina HOM05D005753 ORTHO05D007034 4.7e-35 153.3 569 29.3
Dinv40749 Davidia involucrata HOM05D005753 ORTHO05D007034 6.1e-35 152.9 561 28.2
CAN.G337.126 Capsicum annuum HOM05D005753 ORTHO05D007034 4.4e-33 146.7 552 29.2
Duzib213G1063 Durio zibethinus HOM05D005753 ORTHO05D007034 1.7e-32 144.8 565 28.3
Gorai.009G437800 Gossypium raimondii HOM05D005753 ORTHO05D007034 1.7e-32 144.8 561 28.5
QL08p010535 Quercus lobata HOM05D005753 ORTHO05D007034 1.7e-32 144.8 570 27.9
Haze_09667 Corylus avellana HOM05D005753 ORTHO05D007034 2.8e-32 144.1 594 26.9
Gohir.D05G369100 Gossypium hirsutum HOM05D005753 ORTHO05D007034 2.8e-32 144.1 561 28.5
TAR629G3535 Trochodendron aralioides HOM05D005753 ORTHO05D007034 3.7e-32 143.7 590 27.8
COL.COLO4_09655 Corchorus olitorius HOM05D005753 ORTHO05D007034 8.2e-32 142.5 569 27.4
Cc05_g13740 Coffea canephora HOM05D005753 ORTHO05D007034 1.6e-30 138.3 559 28.6
GSVIVG01037637001 Vitis vinifera HOM05D005753 ORTHO05D007034 5.9e-30 136.3 581 27.4
Cfa020355 Carpinus fangiana HOM05D005753 ORTHO05D007034 8.5e-29 132.5 570 25.6
MD03G1202100 Malus domestica HOM05D005753 ORTHO05D007034 8.5e-29 132.5 543 28.2
Thecc.07G038900 Theobroma cacao HOM05D005753 ORTHO05D007034 8.5e-29 132.5 574 27.2
unitig_8.g4619 Utricularia gibba HOM05D005753 ORTHO05D007034 5.5e-28 129.8 550 29.6
TWI38G1056 Tripterygium wilfordii HOM05D005753 ORTHO05D007034 2.1e-27 127.9 579 27.3
AUR62020456 Chenopodium quinoa HOM05D005753 ORTHO05D007034 3.6e-27 127.1 520 30.0
ECA236G0832 Erigeron canadensis HOM05D005753 ORTHO05D007034 3.6e-27 127.1 472 29.0
Potri.001G423200 Populus trichocarpa HOM05D005753 ORTHO05D007034 3.6e-27 127.1 590 26.6
Oeu062590.1 Olea europaea HOM05D005753 ORTHO05D007034 4.7e-27 126.7 501 29.3
Manes.15G072600 Manihot esculenta HOM05D005753 ORTHO05D007034 6.1e-27 126.3 569 28.5
Gohir.A04G017100 Gossypium hirsutum HOM05D005753 ORTHO05D007034 1.0e-26 125.6 493 29.6
Potri.011G138600 Populus trichocarpa HOM05D005753 ORTHO05D007034 1.8e-26 124.8 582 26.8
AUR62015759 Chenopodium quinoa HOM05D005753 ORTHO05D007034 2.3e-26 124.4 536 28.7
CsaV3_3G005190 Cucumis sativus L. HOM05D005753 ORTHO05D007034 5.2e-26 123.2 523 27.5
CANSAT78G0206 Cannabis sativa HOM05D005753 ORTHO05D007034 6.8e-26 122.9 527 27.9
Lj1A871G90 Lonicera japonica HOM05D005753 ORTHO05D007034 1.5e-25 121.7 447 29.5
Lj6g0004879 Lotus japonicus HOM05D005753 ORTHO05D007034 9.7e-25 119.0 522 28.2
CSS0033352 Camellia sinensis var. sinensis HOM05D005753 ORTHO05D007034 1.7e-24 118.2 394 33.2
TWI38G0917 Tripterygium wilfordii HOM05D005753 ORTHO05D007034 3.7e-24 117.1 576 26.7
Duzib170G0684 Durio zibethinus HOM05D005753 ORTHO05D007034 4.8e-24 116.7 513 26.3
MBI02_g22112_MAGBIO Magnolia biondii HOM05D005753 ORTHO05D007034 4.8e-24 116.7 509 27.7
Prupe.4G211900 Prunus persica HOM05D005753 ORTHO05D007034 1.8e-23 114.8 523 29.6
Cpa.g.sc97.11 Carica papaya HOM05D005753 ORTHO05D007034 2.4e-23 114.4 535 26.2
HanXRQChr16g0515041 Helianthus annuus HOM05D005753 ORTHO05D007034 2.4e-23 114.4 473 27.1
Lsat_1_v5_gn_7_108641 Lactuca sativa HOM05D005753 ORTHO05D007034 2.4e-23 114.4 506 28.5
Sabra16G0289400 Salix brachista HOM05D005753 ORTHO05D007034 2.4e-23 114.4 585 26.2
Aqoxy4G01822 Aquilegia oxysepala HOM05D005753 ORTHO05D007034 3.1e-23 114.0 570 26.1
Nn1g03551 Nelumbo nucifera HOM05D005753 ORTHO05D007034 5.3e-23 113.2 552 27.5
DCAR_022557 Daucus carota HOM05D005753 ORTHO05D007034 7.7e-22 109.4 553 26.8
FAN25G0533 Fragaria x ananassa HOM05D005753 ORTHO05D007034 7.7e-22 109.4 529 28.5
CSS0005908 Camellia sinensis var. sinensis HOM05D005753 ORTHO05D007034 1.7e-21 108.2 98 64.3
CSS0040669 Camellia sinensis var. sinensis HOM05D005753 ORTHO05D007034 1.7e-21 108.2 98 64.3
Sc07g0002780 Simmondsia chinensis HOM05D005753 ORTHO05D007034 3.8e-21 107.1 533 24.4
HanXRQChr15g0494351 Helianthus annuus HOM05D005753 ORTHO05D007034 5.0e-21 106.7 510 27.5
arahy.Tifrunner.gnm1.ann1.F03U7D Arachis hypogaea HOM05D005753 ORTHO05D007034 1.1e-20 105.5 579 27.8
FAN21G2493 Fragaria x ananassa HOM05D005753 ORTHO05D007034 1.1e-20 105.5 102 60.8
Sed0020363 Sechium edule HOM05D005753 ORTHO05D007034 3.2e-20 104.0 543 26.7
Hund02053 Selenicereus undatus HOM05D005753 ORTHO05D007034 4.2e-20 103.6 532 26.9
FAN11G3996 Fragaria x ananassa HOM05D005753 ORTHO05D007034 9.4e-20 102.4 415 29.9
arahy.Tifrunner.gnm1.ann1.2B36BL Arachis hypogaea HOM05D005753 ORTHO05D007034 1.2e-19 102.1 576 26.6
FvH4_3g22540 Fragaria vesca HOM05D005753 ORTHO05D007034 2.1e-19 101.3 405 29.9
Oeu042934.1 Olea europaea HOM05D005753 ORTHO05D007034 2.7e-19 100.9 158 42.4
RcHm_v2.0_Chr5g0039281 Rosa chinensis HOM05D005753 ORTHO05D007034 3.6e-19 100.5 403 30.0
Ah.06g186160 Amaranthus hybridus HOM05D005753 ORTHO05D007034 1.0e-18 99.0 484 27.3
FAN16G1141 Fragaria x ananassa HOM05D005753 ORTHO05D007034 1.0e-18 99.0 92 60.9
Psat5g180520 Pisum sativum HOM05D005753 ORTHO05D007034 1.8e-18 98.2 532 25.2
Ca_14723_v3 Cicer arietinum L. HOM05D005753 ORTHO05D007034 3.0e-18 97.4 489 27.0
EL10Ac4g07817 Beta vulgaris HOM05D005753 ORTHO05D007034 5.2e-18 96.7 537 26.8
AL8G30390 Arabidopsis lyrata HOM05D005753 ORTHO05D007034 1.5e-17 95.1 541 26.4
Carub.0008s1522 Capsella rubella HOM05D005753 ORTHO05D007034 2.0e-17 94.7 539 26.0
Nitab4.5_0003812g0080 Nicotiana tabacum HOM05D005753 ORTHO05D004173 2.6e-17 94.4 469 28.8
CiPaw.11G188500 Carya illinoinensis HOM05D005753 ORTHO05D007034 4.4e-17 93.6 92 54.3
AT5G54920 Arabidopsis thaliana HOM05D005753 ORTHO05D007034 5.7e-17 93.2 535 25.6
Lalb_Chr15g0081011 Lupinus albus HOM05D005753 ORTHO05D007034 7.5e-17 92.8 445 27.2
MELO3C025386.2 Cucumis melo HOM05D005753 ORTHO05D007034 1.3e-16 92.0 106 49.1
CARHR268260 Cardamine hirsuta HOM05D005753 ORTHO05D007034 2.2e-16 91.3 550 26.4
Zm00001eb070120 Zea mays HOM05D005753 ORTHO05D007034 2.8e-16 90.9 490 24.9
Glyma.08G315100 Glycine max HOM05D005753 ORTHO05D007034 3.7e-16 90.5 102 52.0
ClCG10G005460 Citrullus lanatus HOM05D005753 ORTHO05D007034 4.8e-16 90.1 102 50.0
Aa31LG5G10420 Aethionema arabicum HOM05D005753 ORTHO05D007034 6.3e-16 89.7 518 25.3
PSO210G3457 Papaver somniferum HOM05D005753 ORTHO05D007034 1.1e-15 89.0 117 47.9
THA.LOC104818102 Tarenaya hassleriana HOM05D005753 ORTHO05D007034 1.4e-15 88.6 532 26.5
Phvul.006G042100 Phaseolus vulgaris HOM05D005753 ORTHO05D007034 1.8e-15 88.2 177 37.3
PSO832G3698 Papaver somniferum HOM05D005753 ORTHO05D007034 2.4e-15 87.8 117 47.0
PGR083G0792 Punica granatum HOM05D005753 ORTHO05D007034 3.1e-15 87.4 105 50.5
Carub.0007s1385 Capsella rubella HOM05D005753 ORTHO05D007034 1.2e-14 85.5 526 25.5
Sabra11G0124200 Salix brachista HOM05D005753 ORTHO05D007034 1.6e-14 85.1 109 45.9
Zm00001eb431320 Zea mays HOM05D005753 ORTHO05D007034 3.5e-14 84.0 493 26.2
ATR0752G139 Amborella trichopoda HOM05D005753 ORTHO05D007034 5.9e-14 83.2 154 39.6
A01p18150 Brassica napus HOM05D005753 ORTHO05D007034 5.9e-14 83.2 491 26.1
BraA01t01770Z Brassica rapa HOM05D005753 ORTHO05D007034 5.9e-14 83.2 492 26.0
Eucgr.F00770 Eucalyptus grandis HOM05D005753 ORTHO05D007034 1.0e-13 82.4 576 24.3
BcaC06g32718 Brassica carinata HOM05D005753 ORTHO05D007034 2.3e-13 81.3 525 26.7
Medtr3g051270 Medicago truncatula HOM05D005753 ORTHO05D007034 1.5e-12 78.6 519 25.4
Os04g0625900 Oryza sativa ssp. japonica HOM05D005753 ORTHO05D007034 4.2e-12 77.0 483 24.6
C01p23110 Brassica napus HOM05D005753 ORTHO05D007034 9.5e-12 75.9 500 25.4
Thhalv10015348m.g Eutrema salsugineum HOM05D005753 ORTHO05D007034 1.2e-11 75.5 114 42.1
TPR.G16572 Trifolium pratense HOM05D005753 ORTHO05D007034 1.6e-11 75.1 558 22.4
BolC1t02245H Brassica oleracea HOM05D005753 ORTHO05D007034 2.1e-11 74.7 506 24.7
C07p55070 Brassica napus HOM05D005753 ORTHO05D007034 3.6e-11 73.9 114 38.6
BraA03t14769Z Brassica rapa HOM05D006843 ORTHO05D008517 3.6e-11 73.9 114 38.6
AT4G26990 Arabidopsis thaliana HOM05D005753 ORTHO05D007034 8.0e-11 72.8 501 24.8
BcaNung03572 Brassica carinata HOM05D005753 ORTHO05D007034 8.0e-11 72.8 497 25.4
BcaNung03574 Brassica carinata HOM05D005753 ORTHO05D007034 8.0e-11 72.8 100 43.0
BolC7t46005H Brassica oleracea HOM05D006843 ORTHO05D008517 1.8e-10 71.6 125 37.6
AL7G25840 Arabidopsis lyrata HOM05D005753 ORTHO05D007034 3.0e-10 70.9 521 24.2
CDE02G1816 Ceratophyllum demersum HOM05D005753 ORTHO05D007034 4.0e-10 70.5 92 43.5
A03p57000 Brassica napus HOM05D005753 ORTHO05D007034 8.9e-10 69.3 493 25.8
Sp7g24940 Schrenkiella parvula HOM05D005753 ORTHO05D007034 8.9e-10 69.3 491 26.3
Thhalv10025144m.g Eutrema salsugineum HOM05D005753 ORTHO05D007034 2.6e-09 67.8 487 25.7
CSS0046301 Camellia sinensis var. sinensis HOM05D005753 ORTHO05D007034 8.3e-08 62.8 115 36.5
SHI26621 Sapria himalayana HOM05D005753 ORTHO05D007034 1.8e-07 61.6 45 62.2
Gohir.A04G008750 Gossypium hirsutum HOM05D005753 ORTHO05D007034 9.2e-07 59.3 51 54.9
SMO112G0047 Selaginella moellendorffii HOM05D003244 ORTHO05D003645 4.5e-06 57.0 111 35.1


User provided reference genes

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