Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold74G24613 Striga asiatica HOM05D009933 ORTHO05D012084 1.0e-210 736.5 370 100.0
SGA_v2.0_scaffold74G24609 Striga asiatica HOM05D009933 ORTHO05D009712 1.5e-81 307.4 175 89.7
SGA_v2.0_scaffold74G24614 Striga asiatica HOM05D008339 ORTHO05D009712 8.1e-51 205.3 127 79.5
SGA_v2.0_scaffold74G24619 Striga asiatica HOM05D009933 ORTHO05D012084 9.6e-36 155.2 153 51.0
Migut.G00780 Erythranthe guttata HOM05D009933 ORTHO05D012084 4.8e-35 152.9 153 47.1
SalBow7G3223 Salvia bowleyana HOM05D009933 ORTHO05D012084 1.3e-32 144.8 154 46.8
SalBow7G3334 Salvia bowleyana HOM05D000059 ORTHO05D012084 1.7e-32 144.4 153 46.4
SalBow7G2832 Salvia bowleyana HOM05D009933 ORTHO05D012084 2.7e-30 137.1 154 44.8
Peaxi162Scf01623g00014 Petunia axillaris HOM05D009933 ORTHO05D012084 6.7e-29 132.5 353 27.8
unitig_60.g25616 Utricularia gibba HOM05D009933 ORTHO05D012084 2.9e-24 117.1 152 38.8
Migut.I00636 Erythranthe guttata HOM05D009933 ORTHO05D012084 1.2e-22 111.7 172 36.0
Oeu043429.1 Olea europaea HOM05D009933 ORTHO05D012084 1.2e-22 111.7 168 36.9
Oeu043379.1 Olea europaea HOM05D009933 ORTHO05D012084 6.1e-22 109.4 162 37.7
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 3.7e-19 100.1 178 33.7
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 1.4e-18 98.2 368 24.7
MD12G1203500 Malus domestica HOM05D008339 ORTHO05D009712 5.9e-17 92.8 162 35.2
Sabra13G0004800 Salix brachista HOM05D008339 ORTHO05D009712 1.7e-16 91.3 172 33.7
Potri.005G007100 Populus trichocarpa HOM05D008339 ORTHO05D009712 2.9e-16 90.5 169 33.1
Ciclev10013648m.g Citrus clementina HOM05D008339 ORTHO05D009712 5.0e-16 89.7 159 34.0
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 1.9e-15 87.8 172 32.6
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 5.5e-15 86.3 161 33.5
Solyc11g005470.1 Solanum lycopersicum HOM05D009933 ORTHO05D012084 5.5e-15 86.3 174 31.6
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 1.6e-14 84.7 161 32.3
Cfa012848 Carpinus fangiana HOM05D008339 ORTHO05D009712 4.6e-14 83.2 170 31.8
MD12G1203400 Malus domestica HOM05D008339 ORTHO05D009712 4.6e-14 83.2 177 29.9
PGSC0003DMG400038811 Solanum tuberosum HOM05D009933 ORTHO05D012084 4.6e-14 83.2 174 31.6
Oeu060879.1 Olea europaea HOM05D009933 ORTHO05D012084 6.1e-14 82.8 167 32.9
PGSC0003DMG400003969 Solanum tuberosum HOM05D009933 ORTHO05D012084 6.1e-14 82.8 174 30.5
Solyc08g016100.1 Solanum lycopersicum HOM05D009933 ORTHO05D012084 7.9e-14 82.4 181 28.7
Solyc08g016120.1 Solanum lycopersicum HOM05D009933 ORTHO05D012084 7.9e-14 82.4 173 31.2
Cpa.g.sc48.196 Carica papaya HOM05D008339 ORTHO05D009712 1.8e-13 81.3 149 34.2
ClCG02G014760 Citrullus lanatus HOM05D008339 ORTHO05D009712 2.3e-13 80.9 175 27.4
Haze_08675 Corylus avellana HOM05D008339 ORTHO05D009712 3.9e-13 80.1 166 33.1
PGSC0003DMG400003994 Solanum tuberosum HOM05D009933 ORTHO05D012084 5.1e-13 79.7 151 33.1
Solyc08g016110.1 Solanum lycopersicum HOM05D009933 ORTHO05D012084 6.7e-13 79.3 140 32.1
AUR62000433 Chenopodium quinoa HOM05D000060 ORTHO05D004147 1.1e-12 78.6 153 33.3
Solyc04g015510.1 Solanum lycopersicum HOM05D009933 ORTHO05D012084 2.5e-12 77.4 146 30.8
Thhalv10009592m.g Eutrema salsugineum HOM05D013394 ORTHO05D009712 3.3e-12 77.0 165 28.5
PGR031G0599 Punica granatum HOM05D008339 ORTHO05D009712 3.3e-12 77.0 180 31.7
CANSAT54G0094 Cannabis sativa HOM05D008339 ORTHO05D009712 4.3e-12 76.6 140 35.0
MELO3C004166.2 Cucumis melo HOM05D008339 ORTHO05D009712 5.7e-12 76.3 157 30.6
Thecc.05G309700 Theobroma cacao HOM05D008339 ORTHO05D009712 7.4e-12 75.9 149 30.9
Sed0007759 Sechium edule HOM05D008339 ORTHO05D009712 9.7e-12 75.5 153 32.0
Ah.06g196240 Amaranthus hybridus HOM05D008339 ORTHO05D009712 1.7e-11 74.7 150 31.3
CAN.G676.49 Capsicum annuum HOM05D009933 ORTHO05D012084 1.7e-11 74.7 162 29.0
RcHm_v2.0_Chr3g0457691 Rosa chinensis HOM05D008339 ORTHO05D009712 2.8e-11 73.9 176 30.7
TWI12G1182 Tripterygium wilfordii HOM05D008339 ORTHO05D009712 3.7e-11 73.6 135 29.6
CANSAT54G1683 Cannabis sativa HOM05D008339 ORTHO05D009712 4.8e-11 73.2 140 34.3
MELO3C031525.2 Cucumis melo HOM05D008339 ORTHO05D009712 6.3e-11 72.8 156 28.8
AT1G09360 Arabidopsis thaliana HOM05D013394 ORTHO05D009712 8.2e-11 72.4 166 26.5
PGR004G1038 Punica granatum HOM05D008339 ORTHO05D009712 1.4e-10 71.6 172 30.2
FvH4_6g07980 Fragaria vesca HOM05D008339 ORTHO05D009712 1.8e-10 71.2 174 29.3
FAN14G5780 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.8e-10 71.2 174 29.3
FAN02G4119 Fragaria x ananassa HOM05D008339 ORTHO05D009712 3.1e-10 70.5 128 35.9
FvH4_6g08020 Fragaria vesca HOM05D008339 ORTHO05D009712 5.3e-10 69.7 128 35.9
FAN14G1454 Fragaria x ananassa HOM05D008339 ORTHO05D009712 5.3e-10 69.7 128 35.9
Sp1g07970 Schrenkiella parvula HOM05D013394 ORTHO05D009712 6.9e-10 69.3 172 27.3
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 9.1e-10 68.9 166 27.1
BcaC05g24789 Brassica carinata HOM05D013394 ORTHO05D009712 1.2e-09 68.6 176 26.1
BolC5t29492H Brassica oleracea HOM05D013394 ORTHO05D009712 1.2e-09 68.6 176 26.1
C05p07340 Brassica napus HOM05D013394 ORTHO05D009712 1.5e-09 68.2 176 26.1
FAN05G1492 Fragaria x ananassa HOM05D008339 ORTHO05D009712 2.6e-09 67.4 105 34.3
PGR031G3971 Punica granatum HOM05D008339 ORTHO05D009712 3.4e-09 67.0 177 28.8
Sabra05G0006500 Salix brachista HOM05D008339 ORTHO05D009712 3.4e-09 67.0 137 32.1
A06p06100 Brassica napus HOM05D013394 ORTHO05D009712 4.5e-09 66.6 176 26.1
BraA06t23823Z Brassica rapa HOM05D013394 ORTHO05D009712 5.9e-09 66.2 176 26.1
ClCG02G014750 Citrullus lanatus HOM05D008339 ORTHO05D013640 5.9e-09 66.2 370 24.1
Haze_04054 Corylus avellana HOM05D008339 ORTHO05D009712 1.0e-08 65.5 176 29.5
Prupe.6G309200 Prunus persica HOM05D008339 ORTHO05D009712 2.9e-08 63.9 147 28.6
Sc02g0000800 Simmondsia chinensis HOM05D009933 ORTHO05D012084 8.5e-08 62.4 200 26.5
Lj6g0003953 Lotus japonicus HOM05D001578 ORTHO05D001207 3.2e-07 60.5 188 25.0
Oeu063135.1 Olea europaea HOM05D009438 ORTHO05D010870 3.2e-07 60.5 175 24.6
QL05p066264 Quercus lobata HOM05D008403 ORTHO05D010317 4.2e-07 60.1 177 24.3
TAR362G0027 Trochodendron aralioides HOM05D008339 ORTHO05D009712 7.2e-07 59.3 172 25.0
Oeu063127.1 Olea europaea HOM05D009438 ORTHO05D010870 9.4e-07 58.9 175 24.6
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 9.4e-07 58.9 164 25.6
CARHR178500 Cardamine hirsuta HOM05D013394 ORTHO05D009712 1.2e-06 58.5 167 24.6
Eucgr.E00366 Eucalyptus grandis HOM05D008339 ORTHO05D009712 1.2e-06 58.5 121 31.4
FvH4_5g19730 Fragaria vesca HOM05D001578 ORTHO05D001207 1.6e-06 58.2 116 29.3
CARHR158270 Cardamine hirsuta HOM05D009945 ORTHO05D012028 2.1e-06 57.8 165 26.1
Prupe.3G007700 Prunus persica HOM05D001578 ORTHO05D001207 2.1e-06 57.8 102 33.3
Aqoxy4G02379 Aquilegia oxysepala HOM05D008403 ORTHO05D010317 4.7e-06 56.6 180 25.0
Oeu063123.1 Olea europaea HOM05D009438 ORTHO05D010870 6.1e-06 56.2 175 24.0
Rhsim06G0181100 Rhododendron simsii HOM05D009438 ORTHO05D001819 6.1e-06 56.2 137 29.9
FAN05G4801 Fragaria x ananassa HOM05D008339 ORTHO05D009712 7.9e-06 55.8 94 30.9


User provided reference genes

Program Settings