Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 4.8e-103 377.9 196 100.0
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 5.2e-73 278.1 198 76.3
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 2.9e-63 245.7 195 67.7
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 1.4e-62 243.4 203 66.0
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 1.9e-62 243.0 189 68.8
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.2e-62 242.3 206 63.6
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 5.4e-62 241.5 209 64.6
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 9.2e-62 240.7 208 63.5
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 2.1e-61 239.6 221 62.0
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 3.5e-61 238.8 220 60.5
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 7.8e-61 237.7 248 58.9
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.7e-60 236.5 190 67.9
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 3.9e-60 235.3 190 66.8
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 4.3e-59 231.9 190 65.8
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 5.6e-59 231.5 192 63.5
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 5.6e-59 231.5 194 64.4
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 5.6e-59 231.5 192 63.5
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 7.3e-59 231.1 190 67.4
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 9.5e-59 230.7 191 63.9
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 1.6e-58 229.9 192 65.6
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 1.6e-58 229.9 202 63.4
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 3.6e-58 228.8 203 60.6
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 4.7e-58 228.4 189 65.1
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 8.1e-58 227.6 192 63.5
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 1.4e-57 226.9 202 61.4
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 1.4e-57 226.9 201 62.2
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 1.8e-57 226.5 206 60.7
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 1.8e-57 226.5 202 61.9
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 1.8e-57 226.5 206 62.1
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 2.4e-57 226.1 206 61.2
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 2.4e-57 226.1 190 65.3
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 3.1e-57 225.7 191 62.8
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 3.1e-57 225.7 191 66.5
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 4.0e-57 225.3 202 61.4
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 5.2e-57 224.9 193 63.7
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 6.8e-57 224.6 192 62.5
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 8.9e-57 224.2 196 63.8
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 8.9e-57 224.2 199 62.8
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.2e-56 223.8 196 63.3
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.2e-56 223.8 211 60.7
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.5e-56 223.4 189 65.1
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.5e-56 223.4 194 63.4
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 1.5e-56 223.4 186 64.0
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 3.4e-56 222.2 197 63.5
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 3.4e-56 222.2 194 60.8
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 4.4e-56 221.9 196 62.8
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 4.4e-56 221.9 203 61.6
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 4.4e-56 221.9 195 63.1
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 5.8e-56 221.5 189 63.0
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 5.8e-56 221.5 195 62.1
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 9.9e-56 220.7 191 62.3
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 9.9e-56 220.7 187 62.6
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 9.9e-56 220.7 193 63.2
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 9.9e-56 220.7 234 54.7
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 1.3e-55 220.3 203 60.1
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 1.7e-55 219.9 186 62.9
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.7e-55 219.9 188 63.3
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 2.9e-55 219.2 188 63.3
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 6.4e-55 218.0 194 60.3
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 8.4e-55 217.6 160 70.0
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 8.4e-55 217.6 205 59.0
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 1.1e-54 217.2 195 59.5
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.4e-54 216.9 207 60.9
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 1.4e-54 216.9 193 62.2
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 5.4e-54 214.9 194 59.3
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 7.1e-54 214.5 188 62.2
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 7.1e-54 214.5 133 79.7
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 9.2e-54 214.2 208 58.2
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 9.2e-54 214.2 205 57.6
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 1.2e-53 213.8 205 59.0
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 1.2e-53 213.8 200 58.0
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 1.2e-53 213.8 200 58.0
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.2e-53 213.8 208 58.7
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.2e-53 213.8 159 69.8
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 1.6e-53 213.4 200 57.5
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 1.6e-53 213.4 204 57.4
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 2.7e-53 212.6 200 59.5
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 2.7e-53 212.6 193 60.1
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 3.5e-53 212.2 211 57.8
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 3.5e-53 212.2 211 57.8
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 3.5e-53 212.2 140 75.7
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 7.8e-53 211.1 209 57.4
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 7.8e-53 211.1 209 57.4
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 7.8e-53 211.1 190 61.6
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 1.3e-52 210.3 199 58.3
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 1.7e-52 209.9 132 79.5
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 2.3e-52 209.5 199 57.8
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 2.3e-52 209.5 193 61.7
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 3.0e-52 209.1 181 64.1
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 3.9e-52 208.8 210 56.7
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 5.1e-52 208.4 190 61.6
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 5.1e-52 208.4 162 66.7
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 5.1e-52 208.4 198 59.1
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 5.1e-52 208.4 180 64.4
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 6.6e-52 208.0 193 60.1
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.1e-51 207.2 162 68.5
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 1.5e-51 206.8 173 65.3
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 2.5e-51 206.1 146 71.9
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 2.5e-51 206.1 197 57.9
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 3.3e-51 205.7 166 66.3
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 5.6e-51 204.9 189 58.7
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 5.6e-51 204.9 189 58.2
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 7.3e-51 204.5 173 63.0
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 1.6e-50 203.4 170 63.5
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 2.8e-50 202.6 203 55.2
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 1.1e-49 200.7 196 57.7
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 1.8e-49 199.9 146 69.9
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 1.8e-49 199.9 146 70.5
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 1.8e-49 199.9 197 56.3
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 4.0e-49 198.7 132 74.2
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 9.0e-49 197.6 196 58.7
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 9.9e-48 194.1 155 66.5
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 1.7e-47 193.4 199 55.3
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 6.4e-47 191.4 130 75.4
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 6.4e-47 191.4 169 62.1
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.6e-45 186.8 181 61.3
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 9.6e-43 177.6 135 67.4
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 4.0e-41 172.2 202 52.5
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 9.0e-41 171.0 202 52.0
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.2e-40 170.6 128 67.2
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 2.6e-40 169.5 131 64.9
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 3.4e-40 169.1 131 67.2
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 1.1e-38 164.1 164 55.5
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 1.9e-38 163.3 131 64.9
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 1.9e-38 163.3 144 61.8
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 1.3e-34 150.6 201 48.3
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.4e-33 147.1 113 65.5
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 9.0e-33 144.4 194 49.0
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 5.6e-27 125.2 135 51.9
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 1.6e-26 123.6 149 49.7
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 1.4e-25 120.6 198 41.9
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.5e-24 117.1 69 81.2
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 2.6e-24 116.3 76 76.3
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 6.3e-18 95.1 62 75.8
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 8.2e-18 94.7 63 73.0
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 8.2e-18 94.7 63 73.0
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 2.6e-16 89.7 72 65.3
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 2.2e-10 70.1 45 77.8
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 3.4e-08 62.8 137 36.5


User provided reference genes

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