Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1971.8 997 100.0
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1606.3 1010 81.5
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1595.9 1002 81.3
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1582.4 1002 80.7
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1494.9 997 77.3
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1486.5 1011 74.7
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1479.9 998 75.6
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1475.7 1004 74.4
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1465.7 1009 74.1
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1465.7 1011 74.2
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1463.7 1027 72.3
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1461.4 1013 72.9
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1461.0 998 74.7
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1458.0 998 74.6
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1456.0 1010 72.9
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1454.9 1001 74.1
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1452.6 1008 73.1
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1451.8 1010 73.5
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1451.8 1013 72.7
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1444.1 1014 72.3
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1442.6 1012 71.6
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1440.6 1012 71.8
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1436.4 1036 71.6
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1434.5 1024 71.1
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1434.5 1007 72.2
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1429.1 1013 71.5
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1427.5 1001 71.8
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1427.2 1012 72.6
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1427.2 977 74.3
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1427.2 1019 71.1
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1426.4 1017 71.6
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1425.2 1017 71.0
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1421.8 1010 72.2
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1421.4 1017 71.1
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1420.6 1016 70.7
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1420.2 1017 71.0
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1418.3 1042 70.0
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1417.9 1003 72.3
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1407.9 1042 69.5
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1407.1 1037 68.8
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1407.1 1030 68.8
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1403.7 1034 69.9
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1402.9 991 71.3
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1402.5 1052 68.8
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1402.1 1009 70.2
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1398.6 1010 70.1
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1397.9 1008 70.3
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1395.6 1010 70.3
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1391.7 1008 69.2
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1391.7 1011 70.4
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1386.3 1055 68.0
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1385.5 1011 69.6
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1385.2 1026 70.2
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1384.4 968 72.0
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1383.6 999 70.8
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1383.6 1016 70.2
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1378.6 1011 69.6
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1374.4 1009 69.2
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1371.7 997 70.1
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1371.7 1007 68.7
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1370.9 1012 67.8
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1369.8 1012 68.1
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1369.8 1015 69.5
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1363.2 927 75.5
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1363.2 1015 68.5
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1362.1 1009 68.4
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1360.9 1008 67.7
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1358.6 976 71.7
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1358.6 991 70.9
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1355.5 1026 67.9
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1354.3 1007 67.6
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1354.0 1007 67.6
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1353.6 1003 67.9
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1353.6 1007 67.6
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1352.0 1007 67.5
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1351.7 1007 67.5
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1349.7 1083 64.7
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1349.0 1020 67.0
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1346.6 973 70.4
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1338.2 1022 67.2
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1338.2 1000 69.8
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1327.4 970 69.6
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1319.7 1011 66.8
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1315.4 997 68.0
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1306.2 946 71.7
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1300.8 1018 65.7
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1291.6 999 67.3
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1288.1 1110 61.8
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1285.4 989 67.2
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1284.6 1025 65.9
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1283.9 997 66.8
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1283.5 1029 64.3
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1281.9 991 66.7
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1279.6 992 67.0
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1274.6 1019 64.8
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1269.6 981 65.5
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1269.2 991 66.5
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1266.9 1024 63.8
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1264.2 989 67.9
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1237.6 932 68.8
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1235.3 1009 63.9
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1231.1 893 72.8
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1217.2 1031 61.8
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1214.5 1049 61.4
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1211.8 1006 63.9
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1206.0 1046 62.0
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1204.9 859 72.4
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1197.6 1033 60.7
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1196.4 999 61.6
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1180.6 1145 55.9
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1171.4 1007 61.1
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1170.6 975 64.0
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1169.8 914 66.3
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1167.9 1191 54.2
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1164.8 1011 61.2
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1154.4 1010 59.7
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1117.4 1015 59.7
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1094.3 927 61.3
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 4.8e-308 1061.2 857 65.0
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 1.6e-298 1029.6 812 67.5
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 2.1e-295 1019.2 932 58.9
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 3.4e-269 932.2 865 59.0
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.6e-266 923.3 1034 50.3
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 6.8e-262 907.9 782 63.3
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 4.9e-260 901.7 1040 48.9
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 7.3e-248 861.3 968 49.2
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 9.9e-245 850.9 626 71.7
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.3e-233 813.9 622 68.3
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 3.9e-233 812.4 616 69.3
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 7.4e-232 808.1 1007 47.0
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 7.4e-232 808.1 1010 45.8
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 1.9e-224 783.5 645 64.0
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 3.5e-218 762.7 1235 40.5
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.1e-214 751.1 902 45.6
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 2.3e-177 627.1 392 78.8
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.2e-176 624.8 360 83.1
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 2.3e-156 557.4 390 72.3
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 3.9e-148 530.0 557 52.4
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 4.1e-142 510.0 453 62.9
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 7.8e-141 505.8 442 63.3
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 2.1e-133 481.1 533 51.2
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 1.1e-102 379.0 238 79.4
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 1.0e-100 372.5 261 73.2
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 5.3e-97 360.1 205 78.5
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 5.0e-95 353.6 287 64.8
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 2.7e-85 321.2 240 67.1
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 8.8e-84 316.2 832 31.2
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 4.0e-76 290.8 225 68.4
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 3.1e-73 281.2 152 82.9
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 3.1e-73 281.2 150 86.7
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 2.5e-54 218.4 238 47.9
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 8.3e-50 203.4 171 66.7
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.0e-47 196.4 182 63.2
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 1.7e-47 195.7 114 75.4
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 1.9e-46 192.2 268 46.6
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 7.3e-46 190.3 480 31.5
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.8e-40 170.2 90 83.3
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 3.9e-39 167.9 150 56.0
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 9.9e-35 153.3 193 46.6
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 1.9e-33 149.1 116 64.7
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.5e-30 139.4 77 79.2
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.6e-29 136.0 88 65.9
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 7.6e-27 127.1 136 52.2
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.1e-21 109.0 96 56.2
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 6.2e-21 107.5 118 52.5
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 8.1e-21 107.1 80 62.5
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 2.7e-16 92.0 98 50.0
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 2.7e-16 92.0 98 50.0
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 4.6e-16 91.3 80 57.5
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 3.9e-15 88.2 58 77.6
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.1e-12 80.1 78 47.4
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 3.4e-11 75.1 74 55.4
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.7e-10 72.8 47 70.2
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 8.4e-10 70.5 65 53.8
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 7.9e-08 63.9 114 39.5
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 4.3e-06 58.2 71 50.7


User provided reference genes

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