Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 8.9e-167 590.1 280 100.0
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 6.4e-40 168.7 200 48.5
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 1.1e-36 157.9 197 46.2
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 1.9e-36 157.1 197 46.7
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 2.5e-36 156.8 209 44.5
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 8.1e-35 151.8 210 42.4
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 3.1e-34 149.8 209 42.6
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 8.9e-34 148.3 209 42.1
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 8.9e-34 148.3 209 42.6
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.0e-33 147.1 197 43.7
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 2.0e-33 147.1 204 42.2
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 2.6e-33 146.7 203 43.3
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.6e-33 146.7 209 41.1
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 4.4e-33 146.0 210 40.5
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 5.8e-33 145.6 222 39.6
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 5.8e-33 145.6 207 41.5
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 7.5e-33 145.2 197 43.1
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 7.5e-33 145.2 203 41.9
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 1.3e-32 144.4 203 41.9
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 1.7e-32 144.1 197 42.6
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 1.7e-32 144.1 197 42.6
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 1.7e-32 144.1 197 42.6
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 1.7e-32 144.1 209 39.7
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 2.2e-32 143.7 207 42.0
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 3.7e-32 142.9 203 40.9
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 3.7e-32 142.9 209 40.2
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 3.7e-32 142.9 202 42.6
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.9e-32 142.5 209 41.6
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.9e-32 142.5 209 41.6
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 4.9e-32 142.5 209 41.6
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 4.9e-32 142.5 209 39.7
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 6.4e-32 142.1 197 42.1
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 1.1e-31 141.4 209 39.7
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 1.1e-31 141.4 197 42.1
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 1.4e-31 141.0 209 40.2
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 1.9e-31 140.6 186 43.0
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 2.4e-31 140.2 197 41.1
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 3.2e-31 139.8 197 42.1
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 5.4e-31 139.0 197 42.1
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 5.4e-31 139.0 195 42.1
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 5.4e-31 139.0 197 41.1
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 7.1e-31 138.7 195 40.5
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 7.1e-31 138.7 195 41.0
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 7.1e-31 138.7 188 41.0
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 7.1e-31 138.7 203 40.4
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 9.2e-31 138.3 209 40.2
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 9.2e-31 138.3 186 42.5
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 9.2e-31 138.3 209 38.3
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 9.2e-31 138.3 195 41.0
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 9.2e-31 138.3 203 39.9
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 9.2e-31 138.3 186 42.5
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 1.2e-30 137.9 226 37.6
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 1.2e-30 137.9 197 40.6
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 1.2e-30 137.9 200 40.5
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.2e-30 137.9 186 41.9
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 1.2e-30 137.9 193 39.9
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.2e-30 137.9 206 39.3
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 1.6e-30 137.5 209 40.2
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 1.6e-30 137.5 208 38.5
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 2.7e-30 136.7 185 41.6
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 3.5e-30 136.3 186 41.9
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 4.6e-30 136.0 195 40.5
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 4.6e-30 136.0 197 39.1
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 4.6e-30 136.0 195 40.5
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 4.6e-30 136.0 197 39.1
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 6.0e-30 135.6 185 41.6
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 6.0e-30 135.6 209 37.8
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 7.8e-30 135.2 195 41.0
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.0e-29 134.8 206 39.3
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.0e-29 134.8 206 39.3
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.3e-29 134.4 195 41.0
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 1.3e-29 134.4 206 38.8
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 1.7e-29 134.0 195 40.0
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 1.7e-29 134.0 200 40.0
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 1.7e-29 134.0 183 39.9
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 1.7e-29 134.0 186 40.3
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.1e-29 132.5 186 40.9
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.1e-29 132.5 186 40.9
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 6.6e-29 132.1 186 39.8
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 6.6e-29 132.1 194 39.2
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.1e-28 131.3 197 38.1
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.1e-28 131.3 186 40.3
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 1.5e-28 131.0 203 37.9
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.5e-28 131.0 186 39.8
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 1.9e-28 130.6 184 39.7
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.9e-28 130.6 197 38.6
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 2.5e-28 130.2 217 35.9
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 2.5e-28 130.2 206 38.8
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 2.5e-28 130.2 209 37.3
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 3.3e-28 129.8 224 35.7
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 4.3e-28 129.4 204 37.3
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 7.3e-28 128.6 186 39.2
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 9.5e-28 128.3 206 36.4
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 1.6e-27 127.5 186 37.6
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 2.8e-27 126.7 183 37.7
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 3.6e-27 126.3 186 37.6
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 3.6e-27 126.3 186 37.6
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 4.7e-27 125.9 186 37.6
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 4.7e-27 125.9 232 33.6
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 1.1e-26 124.8 186 37.1
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.1e-26 124.8 200 35.0
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.4e-26 124.4 194 36.6
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 5.2e-26 122.5 223 33.6
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 6.8e-26 122.1 203 35.5
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 8.9e-26 121.7 208 35.6
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 8.9e-26 121.7 208 35.6
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 2.6e-25 120.2 218 33.9
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 2.6e-25 120.2 219 33.3
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 2.6e-25 120.2 218 33.9
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 2.6e-25 120.2 218 33.9
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 3.4e-25 119.8 218 33.9
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 5.8e-25 119.0 186 36.6
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.3e-24 117.9 197 37.6
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 1.7e-24 117.5 218 32.6
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 2.9e-24 116.7 218 32.6
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 2.9e-24 116.7 219 32.9
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 2.9e-24 116.7 219 32.9
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 2.9e-24 116.7 195 35.4
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 4.9e-24 115.9 185 36.8
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 4.9e-24 115.9 197 35.5
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 3.0e-21 106.7 194 33.5
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 1.9e-20 104.0 199 31.7
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 5.6e-20 102.4 91 60.4
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 1.2e-19 101.3 167 37.1
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 8.1e-19 98.6 72 65.3
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 8.1e-19 98.6 219 26.5
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 1.8e-18 97.4 94 55.3
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 2.4e-18 97.1 66 74.2
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 5.2e-18 95.9 66 72.7
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 6.8e-18 95.5 199 32.2
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 6.8e-18 95.5 50 86.0
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 1.2e-17 94.7 98 56.1
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.2e-17 94.7 207 28.5
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 1.5e-17 94.4 70 64.3
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 2.6e-17 93.6 199 30.7
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 5.8e-17 92.4 194 29.4
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 4.9e-16 89.4 64 59.4
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 6.4e-16 89.0 47 74.5
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 2.4e-15 87.0 75 57.3
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 2.4e-15 87.0 186 27.4
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 4.2e-15 86.3 66 65.2
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 5.4e-15 85.9 60 66.7
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 5.4e-15 85.9 71 53.5
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 5.4e-15 85.9 66 63.6
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 7.1e-15 85.5 66 62.1
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 7.1e-15 85.5 238 26.5
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 7.1e-15 85.5 59 71.2
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 9.3e-15 85.1 45 77.8
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 3.5e-14 83.2 67 62.7
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 2.3e-13 80.5 203 25.1
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 3.9e-13 79.7 86 45.3
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 3.9e-13 79.7 86 46.5
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 1.5e-12 77.8 51 72.5
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 2.5e-12 77.0 51 60.8
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 2.8e-11 73.6 77 45.5
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 4.8e-11 72.8 53 64.2
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 4.2e-07 59.7 41 53.7


User provided reference genes

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