Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 2.0e-228 795.4 400 100.0
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 2.0e-188 662.5 401 83.0
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 2.1e-177 625.9 401 79.1
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 1.3e-158 563.5 397 70.3
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 4.1e-157 558.5 408 71.3
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 9.1e-157 557.4 413 70.0
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 1.2e-156 557.0 399 68.9
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 4.5e-156 555.1 401 69.6
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 5.9e-156 554.7 408 71.8
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 2.9e-155 552.4 400 69.0
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 6.5e-155 551.2 401 69.1
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 7.2e-154 547.7 401 69.8
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 2.1e-153 546.2 401 69.8
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 8.0e-153 544.3 401 69.3
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 1.4e-152 543.5 401 69.6
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 1.8e-152 543.1 401 68.6
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 1.8e-152 543.1 403 69.0
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 3.0e-152 542.3 401 69.3
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 8.8e-152 540.8 402 68.9
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.0e-151 539.7 396 70.2
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.0e-151 539.7 396 70.2
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 3.3e-151 538.9 401 69.1
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 7.5e-151 537.7 412 67.5
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 1.7e-150 536.6 401 68.1
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 2.2e-150 536.2 396 69.9
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.2e-150 536.2 396 69.7
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 6.3e-150 534.6 401 68.8
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 1.4e-149 533.5 400 68.0
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 1.8e-149 533.1 401 68.1
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 2.4e-149 532.7 401 68.1
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 2.4e-149 532.7 400 68.5
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 5.3e-149 531.6 400 68.2
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 7.0e-149 531.2 401 68.6
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 9.1e-149 530.8 393 69.2
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 1.2e-148 530.4 401 67.3
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 2.0e-148 529.6 400 67.2
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 7.7e-148 527.7 401 66.8
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 7.7e-148 527.7 395 68.4
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 2.2e-147 526.2 401 67.3
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 2.9e-147 525.8 401 66.6
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 3.8e-147 525.4 404 66.8
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 6.5e-147 524.6 399 66.2
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 8.5e-147 524.2 400 67.0
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 8.5e-147 524.2 393 68.2
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 1.1e-146 523.9 400 66.2
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 3.2e-146 522.3 404 66.6
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 4.2e-146 521.9 401 67.3
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 7.2e-146 521.2 400 65.5
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 2.1e-145 519.6 389 69.4
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 3.6e-145 518.8 399 66.2
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 4.7e-145 518.5 398 66.8
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 4.0e-144 515.4 402 65.4
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 5.2e-144 515.0 430 63.0
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 8.8e-144 514.2 399 65.7
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 1.5e-143 513.5 400 65.8
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 1.5e-143 513.5 397 66.8
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 1.5e-143 513.5 401 67.3
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 4.4e-143 511.9 392 66.1
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 5.7e-143 511.5 418 64.1
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 1.3e-142 510.4 396 65.4
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 1.3e-142 510.4 403 65.0
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 1.3e-142 510.4 399 64.4
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 6.3e-142 508.1 401 65.3
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.4e-141 506.9 398 65.8
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.8e-141 506.5 401 65.8
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 1.8e-141 506.5 402 63.2
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 2.4e-141 506.1 411 64.7
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 3.1e-141 505.8 403 64.5
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.1e-141 505.8 401 65.6
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 7.0e-141 504.6 407 63.4
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 2.7e-140 502.7 428 62.1
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 2.9e-139 499.2 393 65.6
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 1.1e-138 497.3 428 61.4
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 7.2e-138 494.6 447 59.3
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 1.8e-136 490.0 400 62.2
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 8.8e-136 487.6 398 62.3
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 9.8e-135 484.2 403 64.0
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.2e-134 483.0 360 69.7
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 4.9e-134 481.9 389 64.0
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 5.4e-133 478.4 403 63.5
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 5.4e-133 478.4 395 64.8
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 1.2e-132 477.2 401 62.6
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 1.0e-131 474.2 395 64.1
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 1.7e-131 473.4 400 61.2
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.8e-129 466.1 435 58.9
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 4.7e-129 465.3 404 60.6
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 1.0e-128 464.2 395 62.0
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 1.2e-127 460.7 404 59.4
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 7.5e-127 458.0 309 74.8
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 3.7e-126 455.7 416 58.4
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 2.4e-125 453.0 401 61.3
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.1e-125 452.2 401 60.3
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 7.0e-125 451.4 395 59.7
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.3e-123 447.2 424 59.2
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 8.0e-121 438.0 398 59.0
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 5.2e-120 435.3 401 56.6
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 8.3e-118 427.9 394 58.1
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 6.6e-115 418.3 395 56.5
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 6.6e-115 418.3 395 56.7
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 1.5e-114 417.2 399 55.9
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 1.2e-113 414.1 390 58.7
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 2.8e-113 412.9 441 54.0
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 7.5e-111 404.8 380 57.9
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 6.4e-110 401.7 399 54.4
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 2.4e-109 399.8 404 54.7
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 9.2e-109 397.9 400 56.8
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 8.6e-99 364.8 272 66.5
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.1e-98 364.4 432 50.7
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 6.6e-91 338.6 400 48.0
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 2.0e-87 327.0 306 57.5
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 2.0e-87 327.0 391 49.1
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 3.8e-86 322.8 396 45.7
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 1.9e-85 320.5 307 54.7
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 2.6e-79 300.1 386 43.5
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 3.0e-75 286.6 431 40.1
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 3.7e-73 279.6 277 55.6
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 9.6e-66 255.0 239 56.5
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 3.6e-60 236.5 422 40.5
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 7.4e-58 228.8 436 39.7
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 6.3e-57 225.7 250 48.0
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 6.9e-56 222.2 147 78.2
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 6.5e-46 189.1 158 60.1
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.2e-35 152.9 111 70.3
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.5e-34 151.4 111 69.4
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.6e-34 150.6 111 70.3
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.8e-32 144.4 111 67.6
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 3.8e-30 136.7 118 63.6
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 1.5e-29 134.8 98 73.5
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 9.4e-29 132.1 111 64.0
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 2.6e-26 124.0 90 68.9
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 8.3e-25 119.0 102 55.9
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 3.1e-24 117.1 129 50.4
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 8.8e-19 99.0 68 73.5
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 5.9e-15 86.3 82 54.9
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.0e-14 85.5 83 59.0
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 2.8e-12 77.4 96 43.8
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 1.8e-11 74.7 336 26.5
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.2e-10 72.0 52 69.2
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 4.9e-09 66.6 56 53.6
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 8.3e-09 65.9 64 51.6
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 7.8e-07 59.3 60 45.0


User provided reference genes

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