Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 6.4e-75 283.9 131 100.0
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 3.3e-63 245.0 131 87.8
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 1.5e-60 236.1 134 84.3
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 5.8e-60 234.2 133 84.2
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 1.3e-59 233.0 130 85.4
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 1.7e-59 232.6 133 82.7
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.7e-59 232.6 131 84.0
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 1.7e-59 232.6 131 84.7
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 1.7e-59 232.6 130 84.6
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.7e-59 232.6 133 83.5
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 2.9e-59 231.9 130 83.8
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 3.7e-59 231.5 130 84.6
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 3.7e-59 231.5 130 84.6
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 3.7e-59 231.5 134 81.3
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 4.9e-59 231.1 130 83.8
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 6.4e-59 230.7 130 84.6
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 6.4e-59 230.7 130 84.6
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 6.4e-59 230.7 130 84.6
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 6.4e-59 230.7 130 84.6
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 6.4e-59 230.7 130 84.6
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 6.4e-59 230.7 130 84.6
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 8.3e-59 230.3 131 83.2
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 1.4e-58 229.6 130 83.8
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.4e-58 229.6 131 80.9
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 1.9e-58 229.2 131 83.2
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 2.4e-58 228.8 131 83.2
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 2.4e-58 228.8 129 84.5
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.4e-58 228.8 130 83.8
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 3.2e-58 228.4 130 83.8
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 4.1e-58 228.0 131 83.2
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 4.1e-58 228.0 130 83.1
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 4.1e-58 228.0 130 83.1
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 4.1e-58 228.0 130 83.8
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 5.4e-58 227.6 130 83.1
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 5.4e-58 227.6 128 84.4
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 5.4e-58 227.6 128 84.4
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 5.4e-58 227.6 130 83.1
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 7.1e-58 227.3 134 82.1
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 7.1e-58 227.3 130 83.1
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 7.1e-58 227.3 131 82.4
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 9.2e-58 226.9 131 82.4
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 9.2e-58 226.9 130 82.3
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.2e-58 226.9 130 82.3
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 9.2e-58 226.9 130 83.1
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 9.2e-58 226.9 130 81.5
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 9.2e-58 226.9 130 82.3
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 1.2e-57 226.5 130 82.3
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 1.2e-57 226.5 131 82.4
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 1.2e-57 226.5 131 82.4
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.2e-57 226.5 130 81.5
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.6e-57 226.1 130 83.1
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 1.6e-57 226.1 134 79.9
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 1.6e-57 226.1 134 79.9
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.1e-57 225.7 131 80.9
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.7e-57 225.3 130 81.5
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.7e-57 225.3 130 81.5
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.5e-57 224.9 130 83.1
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 3.5e-57 224.9 130 83.1
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 3.5e-57 224.9 130 81.5
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 3.5e-57 224.9 131 82.4
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 6.0e-57 224.2 134 79.1
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 6.0e-57 224.2 130 80.8
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 7.8e-57 223.8 132 80.3
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 7.8e-57 223.8 130 81.5
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 7.8e-57 223.8 130 81.5
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 7.8e-57 223.8 130 81.5
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 7.8e-57 223.8 130 81.5
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 1.7e-56 222.6 131 81.7
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 2.3e-56 222.2 128 77.3
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.3e-56 222.2 130 80.8
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.3e-56 222.2 130 81.5
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 3.0e-56 221.9 129 80.6
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 3.0e-56 221.9 134 76.9
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 3.9e-56 221.5 149 71.8
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 3.9e-56 221.5 131 80.9
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.9e-56 221.5 128 81.2
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 3.9e-56 221.5 128 81.2
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 3.9e-56 221.5 131 80.9
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 3.9e-56 221.5 131 80.9
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 5.1e-56 221.1 128 81.2
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 6.6e-56 220.7 131 79.4
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 8.6e-56 220.3 128 75.8
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.1e-55 219.9 130 80.0
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.1e-55 219.9 130 80.0
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 1.1e-55 219.9 131 79.4
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 1.1e-55 219.9 138 77.5
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 1.1e-55 219.9 128 80.5
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 1.5e-55 219.5 128 82.0
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.5e-55 219.5 130 79.2
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.9e-55 219.2 131 80.2
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 1.9e-55 219.2 131 80.2
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 1.9e-55 219.2 128 80.5
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 3.3e-55 218.4 131 78.6
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 5.6e-55 217.6 131 77.1
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 7.3e-55 217.2 130 80.8
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 9.5e-55 216.9 130 77.7
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 1.2e-54 216.5 128 80.5
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 1.2e-54 216.5 128 80.5
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 1.2e-54 216.5 131 78.6
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 1.2e-54 216.5 131 78.6
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 1.6e-54 216.1 134 77.6
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 2.1e-54 215.7 134 76.9
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.8e-54 215.3 155 68.4
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 6.2e-54 214.2 131 77.9
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 6.2e-54 214.2 128 79.7
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 6.2e-54 214.2 128 79.7
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 6.2e-54 214.2 128 79.7
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 8.1e-54 213.8 128 79.7
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 8.1e-54 213.8 131 78.6
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 8.1e-54 213.8 131 78.6
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 1.1e-53 213.4 131 77.9
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 1.1e-53 213.4 131 77.9
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 1.4e-53 213.0 131 77.1
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 6.8e-53 210.7 128 78.1
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 6.8e-53 210.7 126 77.8
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 8.9e-53 210.3 128 78.1
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 8.9e-53 210.3 128 78.1
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 8.9e-53 210.3 128 78.1
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 8.9e-53 210.3 128 78.1
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 8.9e-53 210.3 128 78.1
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 8.9e-53 210.3 121 81.0
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 1.2e-52 209.9 128 78.1
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 1.5e-52 209.5 129 77.5
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 2.0e-52 209.1 131 72.5
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 3.4e-52 208.4 176 60.8
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.2e-51 205.7 126 76.2
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 2.9e-51 205.3 125 78.4
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 3.7e-51 204.9 125 78.4
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 1.9e-50 202.6 127 74.8
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 4.1e-50 201.4 108 85.2
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 4.6e-49 198.0 126 73.0
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 6.0e-49 197.6 108 82.4
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.3e-48 195.7 108 85.2
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 8.6e-48 193.7 128 68.8
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 1.5e-47 193.0 108 83.3
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.8e-44 181.0 140 65.0
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 3.9e-40 168.3 99 78.8
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 2.5e-39 165.6 92 83.7
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 2.1e-38 162.5 86 88.4
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 3.6e-38 161.8 100 78.0
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 4.8e-38 161.4 128 66.4
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 6.2e-38 161.0 90 85.6
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 2.4e-37 159.1 90 82.2
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 3.1e-37 158.7 108 72.2
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 5.3e-37 157.9 126 62.7
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 6.9e-37 157.5 86 86.0
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 4.4e-36 154.8 86 84.9
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 1.3e-35 153.3 87 82.8
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 3.8e-35 151.8 83 84.3
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 1.4e-34 149.8 87 80.5
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 7.1e-34 147.5 170 48.2
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 3.5e-33 145.2 78 87.2
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 5.1e-32 141.4 131 58.0
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 6.6e-32 141.0 78 87.2
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 4.3e-31 138.3 135 56.3
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 1.4e-29 133.3 64 93.8
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 6.9e-29 131.0 78 78.2
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 6.9e-29 131.0 75 82.7
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 2.2e-27 125.9 132 51.5
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 9.3e-26 120.6 73 75.3
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 1.9e-23 112.8 63 85.7
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 6.2e-22 107.8 121 47.1
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 6.2e-22 107.8 121 47.1
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 1.2e-20 103.6 63 82.5
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 1.2e-20 103.6 57 84.2
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 3.8e-11 72.0 44 75.0


User provided reference genes

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