Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 5.0e-269 930.6 502 100.0
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 1.2e-225 786.6 499 83.4
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 5.6e-212 741.1 501 80.0
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 6.4e-200 701.0 500 75.4
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 7.8e-198 694.1 496 75.2
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 1.1e-196 690.3 494 74.9
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 4.0e-194 681.8 493 73.8
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 4.4e-193 678.3 489 73.8
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 7.6e-193 677.6 485 74.2
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 8.4e-192 674.1 501 74.1
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.1e-191 673.7 483 73.7
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 1.4e-191 673.3 500 72.8
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 2.4e-191 672.5 492 75.0
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 3.2e-191 672.2 500 74.6
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 5.4e-191 671.4 503 71.4
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 6.0e-190 667.9 487 73.9
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.5e-188 662.5 502 71.3
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 4.3e-188 661.8 484 74.4
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 9.6e-188 660.6 502 72.1
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.2e-187 660.2 488 73.4
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 1.6e-187 659.8 485 73.8
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 6.2e-187 657.9 484 72.5
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 1.1e-186 657.1 488 73.0
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.4e-186 656.0 502 71.7
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 3.1e-186 655.6 488 73.0
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 4.0e-186 655.2 493 72.0
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 6.9e-186 654.4 496 70.4
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 6.9e-186 654.4 494 73.3
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 1.2e-185 653.7 496 71.0
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 3.4e-185 652.1 491 72.3
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 2.9e-184 649.0 482 72.0
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 3.8e-184 648.7 496 69.4
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.2e-182 643.7 503 71.2
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 2.1e-182 642.9 495 71.7
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 3.5e-182 642.1 493 71.2
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 6.0e-182 641.3 497 69.4
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 7.8e-182 641.0 494 71.5
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.0e-181 640.6 518 67.2
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.3e-181 640.2 500 70.8
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 3.0e-181 639.0 484 72.1
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 5.1e-181 638.3 492 71.5
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 1.9e-180 636.3 497 70.4
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.9e-180 636.3 486 70.6
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 7.3e-180 634.4 501 73.3
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.6e-180 634.0 528 65.7
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 9.6e-180 634.0 498 70.5
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 2.1e-179 632.9 493 71.0
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.8e-179 632.5 484 70.7
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.2e-179 631.3 500 69.8
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 3.1e-178 629.0 500 69.8
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 4.0e-178 628.6 490 69.8
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 4.0e-178 628.6 490 70.0
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 5.3e-178 628.2 499 68.3
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 2.0e-177 626.3 468 72.2
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 2.6e-177 625.9 500 68.6
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 3.4e-177 625.5 512 67.0
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 4.5e-177 625.2 490 73.5
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 9.9e-177 624.0 501 69.9
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 1.3e-176 623.6 500 68.4
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 4.9e-176 621.7 494 69.6
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 8.4e-176 620.9 505 66.7
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 3.2e-175 619.0 524 66.8
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 5.4e-175 618.2 422 78.9
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 5.4e-175 618.2 486 69.1
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 7.1e-175 617.8 500 69.2
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 4.6e-174 615.1 498 66.9
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.0e-174 614.8 500 68.6
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.3e-173 613.6 493 68.0
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 3.3e-172 609.0 491 66.8
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 4.3e-172 608.6 500 68.0
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 1.6e-171 606.7 486 68.5
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 8.1e-171 604.4 496 66.7
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 1.4e-170 603.6 503 66.8
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.8e-170 603.2 505 66.7
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 1.8e-170 603.2 491 67.2
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 3.1e-170 602.4 492 67.7
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 4.0e-170 602.1 497 66.4
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 9.0e-170 600.9 506 66.6
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 9.0e-170 600.9 497 66.8
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 1.5e-169 600.1 475 68.8
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 2.6e-169 599.4 490 68.6
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 2.6e-169 599.4 505 65.7
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 3.4e-169 599.0 487 67.6
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 4.5e-169 598.6 496 66.7
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 7.6e-169 597.8 502 65.5
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 9.9e-169 597.4 497 67.2
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.7e-168 596.7 487 65.5
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 2.2e-168 596.3 505 65.7
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 6.4e-168 594.7 506 65.6
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.4e-167 593.6 472 70.8
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 1.4e-167 593.6 487 64.9
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 1.2e-166 590.5 491 67.0
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 1.3e-165 587.0 500 66.0
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.8e-165 586.6 380 82.9
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 3.0e-165 585.9 500 63.4
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 4.3e-164 582.0 502 65.9
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 2.1e-163 579.7 487 66.3
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 1.8e-162 576.6 485 65.8
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.8e-162 576.6 435 71.3
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 2.4e-162 576.2 507 64.9
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 6.9e-162 574.7 485 65.8
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 5.8e-161 571.6 440 73.0
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.4e-159 567.0 472 66.1
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.7e-156 555.1 520 60.8
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 8.8e-149 531.2 492 62.2
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 2.2e-147 526.6 529 59.9
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 8.2e-147 524.6 480 61.7
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.0e-144 517.7 361 78.1
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 4.5e-137 492.3 470 57.7
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 4.7e-134 482.3 393 71.5
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 2.8e-131 473.0 501 55.3
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 4.8e-131 472.2 459 59.7
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 2.3e-125 453.4 493 55.6
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 2.2e-123 446.8 403 61.3
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 2.0e-121 440.3 394 61.4
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.6e-118 430.6 374 68.2
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 9.8e-108 394.8 490 52.4
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.6e-102 377.5 425 54.6
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 3.7e-99 366.3 382 57.9
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 3.7e-99 366.3 382 57.9
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 2.6e-92 343.6 444 49.1
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 5.8e-92 342.4 370 56.2
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 5.1e-88 329.3 253 76.7
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.3e-87 326.6 374 52.9
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 3.4e-84 316.6 324 53.7
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.7e-78 296.2 219 72.6
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.9e-75 287.0 220 70.5
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 4.2e-74 283.1 416 43.8
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.5e-60 238.0 202 68.3
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.5e-60 238.0 362 43.6
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 5.4e-58 229.6 272 53.7
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 5.8e-52 209.5 401 36.2
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.8e-51 206.8 339 38.6
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.8e-45 188.0 164 64.0
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.8e-38 163.3 96 82.3
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 5.3e-37 159.8 92 83.7
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 9.0e-37 159.1 132 61.4
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.4e-34 151.8 106 63.2
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 8.8e-32 142.5 290 38.6
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 4.3e-31 140.2 87 77.0
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 7.7e-20 102.8 185 40.0
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 2.2e-19 101.3 122 49.2
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 5.0e-19 100.1 151 43.0
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.0e-16 92.4 95 51.6
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.2e-12 79.0 60 65.0
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.2e-12 79.0 60 65.0
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 1.1e-10 72.4 70 58.6
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.1e-10 72.4 60 60.0
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 4.7e-09 67.0 59 64.4
Solyc05g150127.1 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.7e-06 58.5 35 85.7
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 2.2e-06 58.2 50 66.0


User provided reference genes

Program Settings