Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 0.0e+00 1513.0 784 100.0
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 0.0e+00 1205.3 785 78.6
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 0.0e+00 1146.0 782 74.7
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 5.4e-270 934.5 786 63.9
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 6.1e-266 921.0 785 61.5
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.0e-261 906.0 787 61.5
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 4.7e-258 894.8 789 60.2
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 9.8e-256 887.1 783 59.5
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 8.3e-255 884.0 783 60.0
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.9e-254 882.9 783 59.9
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 1.5e-248 863.2 828 57.2
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 5.8e-248 861.3 785 57.7
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 5.8e-248 861.3 788 57.7
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 7.5e-248 860.9 791 58.0
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 9.8e-248 860.5 786 57.4
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 2.9e-247 859.0 787 56.4
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 7.0e-246 854.4 788 57.1
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 1.6e-245 853.2 781 57.7
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 3.0e-244 849.0 800 56.2
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 3.9e-244 848.6 783 57.0
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 6.6e-244 847.8 760 59.2
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 1.9e-243 846.3 785 56.3
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 3.3e-243 845.5 784 57.5
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 7.3e-243 844.3 784 57.7
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 8.9e-241 837.4 783 56.2
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 2.2e-239 832.8 792 56.1
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 2.2e-239 832.8 786 56.6
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 3.7e-239 832.0 785 56.3
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 4.9e-239 831.6 801 55.7
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 1.1e-238 830.5 783 55.8
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 2.4e-238 829.3 786 55.9
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 2.4e-238 829.3 782 56.1
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 4.1e-238 828.6 786 55.9
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 1.2e-237 827.0 782 55.5
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.6e-237 826.6 795 55.2
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 3.9e-236 822.0 766 56.9
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 5.1e-236 821.6 785 55.2
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 1.1e-235 820.5 785 55.3
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 3.3e-235 818.9 784 56.0
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 8.1e-234 814.3 787 55.5
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 1.5e-232 810.1 785 56.4
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 2.9e-231 805.8 789 55.8
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 1.2e-229 800.4 790 54.2
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 1.6e-229 800.0 785 53.5
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 4.6e-229 798.5 799 53.7
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.0e-228 797.3 791 54.5
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 3.9e-228 795.4 784 54.3
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 9.6e-227 790.8 799 53.7
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 9.6e-227 790.8 785 54.0
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 2.1e-226 789.6 783 55.8
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 6.2e-226 788.1 786 54.5
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 1.5e-224 783.5 783 53.4
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 3.4e-224 782.3 785 53.5
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 5.8e-224 781.6 752 55.7
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 1.3e-223 780.4 788 53.7
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 2.9e-223 779.2 785 52.9
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 1.4e-222 776.9 788 53.8
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 2.4e-222 776.2 784 52.0
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 2.4e-222 776.2 788 52.9
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 7.1e-222 774.6 788 53.2
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 9.3e-222 774.2 786 53.6
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 1.6e-221 773.5 809 52.7
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 1.3e-220 770.4 786 53.1
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 5.1e-220 768.5 737 55.4
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 6.6e-220 768.1 783 52.9
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 8.7e-220 767.7 808 52.2
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 1.6e-218 763.5 755 54.8
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 6.2e-218 761.5 795 51.7
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 5.3e-217 758.4 759 53.0
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 6.9e-217 758.1 801 51.4
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 1.5e-216 756.9 783 52.1
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 1.5e-216 756.9 792 52.5
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 1.7e-215 753.4 801 52.1
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 2.5e-211 739.6 788 49.5
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 2.8e-210 736.1 764 55.0
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 2.2e-207 726.5 762 55.1
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 4.9e-207 725.3 710 54.1
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 3.2e-206 722.6 784 50.6
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 2.7e-205 719.5 594 62.8
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 6.9e-201 704.9 754 51.9
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 2.2e-199 699.9 829 48.4
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 2.2e-199 699.9 753 51.4
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 6.5e-199 698.4 791 49.7
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 6.5e-199 698.4 597 60.1
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 1.0e-196 691.0 785 47.3
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 3.4e-192 676.0 592 59.1
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 3.4e-192 676.0 596 58.7
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 5.5e-190 668.7 785 48.0
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 1.8e-188 663.7 550 63.5
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 3.0e-188 662.9 658 54.1
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.7e-187 658.7 782 46.5
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 2.2e-186 656.8 785 48.2
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 2.4e-185 653.3 588 58.0
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 2.6e-184 649.8 589 58.4
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 2.2e-183 646.7 592 57.4
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 8.5e-183 644.8 763 46.9
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 8.5e-183 644.8 589 57.4
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 8.5e-183 644.8 679 49.0
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 1.4e-182 644.0 538 62.5
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 3.2e-182 642.9 786 45.9
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 5.9e-176 622.1 740 47.8
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 3.2e-174 616.3 459 69.1
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 9.7e-171 604.7 551 60.1
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.7e-167 594.0 784 45.9
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 1.0e-164 584.7 605 51.1
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 5.5e-150 535.8 787 42.1
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 3.4e-147 526.6 786 38.4
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.6e-143 512.3 548 50.2
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 9.2e-137 491.9 644 44.9
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 2.0e-131 474.2 530 47.9
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 2.3e-127 460.7 384 64.1
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 3.0e-119 433.7 447 51.0
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 2.0e-115 421.0 334 63.2
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 3.3e-110 403.7 288 70.8
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 4.2e-105 386.7 327 60.9
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 3.5e-104 383.6 834 30.5
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 3.5e-104 383.6 366 55.5
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 5.6e-102 376.3 499 44.9
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 2.4e-100 370.9 508 43.3
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 3.9e-95 353.6 317 57.1
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 6.9e-92 342.8 586 39.2
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 2.7e-88 330.9 289 60.2
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.1e-86 325.5 759 29.9
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 4.1e-84 317.0 286 60.5
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 3.0e-79 300.8 793 27.7
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 1.6e-77 295.0 230 64.8
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 1.7e-66 258.5 177 70.1
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 2.0e-59 235.0 205 58.5
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 3.6e-56 224.2 751 26.5
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 6.5e-50 203.4 240 44.6
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 2.2e-37 161.8 138 62.3
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.8e-37 161.4 440 29.8
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.1e-36 159.5 440 29.5
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 3.1e-36 157.9 188 46.3
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 5.4e-36 157.1 269 39.0
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 3.7e-29 134.4 189 39.7
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 1.4e-28 132.5 253 34.0
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 1.2e-27 129.4 110 62.7
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 3.3e-25 121.3 120 50.8
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 8.3e-21 106.7 148 41.9
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 5.4e-20 104.0 85 58.8
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 2.7e-19 101.7 80 61.2
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.9e-18 97.8 193 35.8
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.0e-18 97.4 76 61.8
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 8.9e-15 86.7 68 61.8
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 1.3e-10 72.8 118 35.6
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 3.9e-10 71.2 82 40.2
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 8.9e-07 60.1 108 28.7


User provided reference genes

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