Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 2.5e-273 944.9 497 100.0
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 9.7e-217 756.9 497 81.1
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 7.1e-167 591.3 527 63.6
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 5.6e-156 555.1 530 60.8
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.4e-154 549.7 530 60.4
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 7.1e-151 538.1 534 59.2
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 3.1e-138 496.1 516 57.6
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 2.3e-133 479.9 545 53.0
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 3.9e-133 479.2 520 56.2
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 7.4e-132 474.9 538 53.3
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 2.9e-128 463.0 516 53.9
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 7.9e-126 454.9 563 51.7
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 7.9e-126 454.9 540 52.0
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 1.8e-125 453.8 516 54.1
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 4.3e-124 449.1 513 53.8
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 4.8e-123 445.7 540 53.1
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 1.8e-122 443.7 531 53.3
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 3.1e-122 443.0 545 50.3
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 3.1e-122 443.0 543 50.6
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 5.9e-121 438.7 520 53.3
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 7.6e-121 438.3 534 51.5
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.3e-120 437.6 587 48.4
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.1e-118 430.3 541 51.4
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 2.7e-118 429.9 527 51.2
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 5.1e-117 425.6 545 51.0
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 1.5e-116 424.1 537 50.7
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 1.5e-116 424.1 540 51.7
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 3.3e-116 422.9 526 52.3
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 7.4e-116 421.8 538 50.7
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 9.7e-116 421.4 546 49.3
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 2.2e-115 420.2 539 50.1
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 2.8e-115 419.9 543 50.8
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 3.7e-115 419.5 557 48.8
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 4.5e-113 412.5 539 49.5
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 7.7e-113 411.8 626 43.9
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.9e-112 409.8 537 49.0
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.8e-112 409.5 525 50.9
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 1.1e-111 407.9 573 46.8
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 4.2e-111 406.0 514 50.8
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.2e-110 404.4 538 48.3
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 2.7e-110 403.3 534 50.6
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 7.9e-110 401.7 537 51.2
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.4e-109 401.0 524 46.9
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 3.0e-109 399.8 549 47.9
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 1.1e-108 397.9 566 47.9
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 5.7e-108 395.6 531 48.6
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 3.1e-106 389.8 535 48.6
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 7.7e-105 385.2 540 47.8
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 2.2e-104 383.6 506 50.0
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 1.1e-103 381.3 530 48.9
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 1.4e-103 380.9 530 47.9
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 4.2e-103 379.4 546 45.6
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 5.5e-103 379.0 551 46.6
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 1.2e-102 377.9 547 46.4
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.2e-102 377.9 572 44.4
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 7.9e-102 375.2 513 46.6
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 1.0e-101 374.8 530 46.4
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 2.0e-100 370.5 553 47.4
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 2.2e-99 367.1 474 49.8
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 3.7e-99 366.3 535 46.7
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 8.2e-99 365.2 570 44.6
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 5.3e-98 362.5 504 47.8
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 4.5e-97 359.4 514 47.1
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 5.9e-97 359.0 540 45.0
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 3.8e-96 356.3 545 46.4
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 4.2e-95 352.8 545 44.0
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.6e-94 350.9 520 43.7
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 4.7e-94 349.4 550 45.6
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 4.7e-94 349.4 540 45.4
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 6.1e-94 349.0 538 44.8
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.4e-93 347.8 529 45.9
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 3.0e-93 346.7 603 43.1
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 3.0e-93 346.7 533 46.3
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 9.7e-92 341.7 530 43.4
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 6.3e-91 339.0 334 55.1
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 6.3e-91 339.0 531 45.4
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 8.2e-91 338.6 493 48.3
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 4.1e-90 336.3 547 43.7
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 7.0e-90 335.5 507 44.8
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 2.7e-89 333.6 507 44.4
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 6.5e-88 328.9 508 42.7
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 8.5e-88 328.6 445 45.8
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 8.5e-88 328.6 519 42.8
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 8.0e-86 322.0 516 43.8
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 1.4e-85 321.2 521 42.2
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 1.5e-84 317.8 561 40.5
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 2.0e-84 317.4 522 44.6
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.0e-84 317.4 580 42.2
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 3.4e-84 316.6 505 42.2
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 1.3e-83 314.7 550 41.1
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 2.2e-83 313.9 509 41.8
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 2.7e-81 307.0 529 42.9
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 9.5e-79 298.5 453 46.1
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 6.1e-78 295.8 484 43.4
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 1.8e-77 294.3 516 40.7
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 6.8e-77 292.4 529 39.7
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 8.8e-77 292.0 578 39.3
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.3e-75 288.1 456 41.7
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 6.3e-75 285.8 529 40.6
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 1.1e-71 275.0 551 38.7
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.5e-71 273.9 292 52.7
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 3.6e-70 270.0 558 37.8
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 4.4e-68 263.1 471 42.3
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 4.4e-68 263.1 308 50.6
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 8.3e-67 258.8 465 39.4
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 8.3e-67 258.8 465 39.4
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 1.1e-66 258.5 527 38.9
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.5e-65 253.4 546 38.3
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 2.8e-62 243.8 294 49.3
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 2.0e-57 227.6 463 41.3
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.9e-55 221.1 383 40.7
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 1.0e-48 198.7 324 40.7
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 8.1e-46 189.1 400 36.8
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 4.0e-45 186.8 490 31.6
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 5.8e-44 183.0 560 31.8
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 2.9e-43 180.6 437 36.8
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 1.9e-42 177.9 557 31.1
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 3.2e-42 177.2 439 37.4
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.7e-40 171.4 244 46.3
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 4.9e-35 153.3 389 34.7
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 2.4e-29 134.4 163 42.3
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 3.0e-24 117.5 210 42.9
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.6e-22 111.7 252 37.7
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 5.3e-21 106.7 235 39.1
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 1.0e-16 92.4 53 75.5
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 8.7e-16 89.4 125 33.6
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.1e-15 89.0 282 31.9
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 1.5e-15 88.6 167 41.3
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 7.4e-15 86.3 200 37.0
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 3.7e-14 84.0 128 41.4
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.8e-14 83.6 100 54.0
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 1.8e-13 81.6 190 37.4
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 3.8e-11 73.9 100 50.0
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 3.8e-11 73.9 100 50.0
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 3.8e-11 73.9 100 50.0
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 3.8e-11 73.9 100 50.0
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 3.8e-11 73.9 100 50.0
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 3.8e-11 73.9 100 50.0
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 1.1e-10 72.4 139 38.1
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 1.1e-10 72.4 97 48.5
SGA_v2.0_scaffold31G12601 Striga asiatica HOM05D018969 ORTHO05D029317 9.7e-07 59.3 62 53.2
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 1.3e-06 58.9 43 65.1


User provided reference genes

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