Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 1.2e-206 723.0 378 100.0
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 3.2e-127 459.1 357 72.0
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 2.1e-123 446.4 344 71.8
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 3.5e-118 429.1 293 77.1
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 3.5e-118 429.1 300 76.0
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 1.3e-117 427.2 364 66.2
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.8e-117 426.8 338 69.8
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 1.6e-115 420.2 343 69.1
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.6e-115 420.2 301 74.4
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.8e-115 419.5 365 66.0
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 8.1e-115 417.9 344 68.6
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 8.1e-115 417.9 302 75.8
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 9.0e-114 414.5 335 69.9
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 1.5e-113 413.7 334 70.7
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 5.8e-113 411.8 368 66.3
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 9.9e-113 411.0 333 69.4
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 9.9e-113 411.0 345 65.5
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.7e-112 410.2 325 69.8
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.9e-112 409.5 284 76.8
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 6.4e-112 408.3 281 78.3
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.4e-111 407.1 327 69.1
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 1.4e-111 407.1 340 67.9
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.4e-111 406.4 324 68.8
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 3.2e-111 406.0 328 69.5
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 7.1e-111 404.8 344 65.7
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 7.1e-111 404.8 343 66.5
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 9.3e-111 404.4 288 76.4
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 9.3e-111 404.4 338 67.2
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.2e-110 404.1 322 69.6
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.2e-110 404.1 343 65.9
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 3.5e-110 402.5 341 68.0
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 3.5e-110 402.5 336 68.8
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 3.5e-110 402.5 324 70.1
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 4.6e-110 402.1 281 75.8
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 4.6e-110 402.1 291 73.5
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 7.9e-110 401.4 355 62.5
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 7.9e-110 401.4 281 75.4
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 1.0e-109 401.0 358 63.7
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.0e-109 401.0 283 76.7
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 1.0e-109 401.0 352 66.8
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 1.0e-109 401.0 342 65.8
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 1.3e-109 400.6 330 67.6
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.3e-109 400.6 283 76.3
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.8e-109 400.2 356 64.3
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 2.3e-109 399.8 353 64.3
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 5.1e-109 398.7 343 67.3
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 5.1e-109 398.7 331 68.0
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 6.7e-109 398.3 296 72.3
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 6.7e-109 398.3 342 66.7
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 1.1e-108 397.5 349 63.9
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 1.1e-108 397.5 286 74.5
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 1.5e-108 397.1 346 67.1
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 1.9e-108 396.7 343 65.0
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 1.9e-108 396.7 341 66.6
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 2.5e-108 396.4 350 64.9
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 3.3e-108 396.0 319 67.7
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 5.6e-108 395.2 297 70.7
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 9.6e-108 394.4 340 66.8
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 9.6e-108 394.4 323 65.3
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 9.6e-108 394.4 337 66.5
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 1.3e-107 394.0 296 70.9
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 2.8e-107 392.9 331 67.4
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 3.7e-107 392.5 296 70.6
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 3.7e-107 392.5 302 72.5
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 4.8e-107 392.1 322 66.5
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 8.1e-107 391.3 284 71.5
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 8.1e-107 391.3 353 64.6
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.4e-106 390.6 354 64.1
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 1.8e-106 390.2 296 70.9
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 5.3e-106 388.7 354 61.6
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 9.0e-106 387.9 287 71.4
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 1.5e-105 387.1 278 74.8
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 2.6e-105 386.3 287 70.7
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 3.4e-105 386.0 354 61.3
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 4.5e-105 385.6 279 73.1
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 4.5e-105 385.6 337 65.3
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 4.5e-105 385.6 311 68.2
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 5.8e-105 385.2 329 65.3
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 5.8e-105 385.2 322 66.5
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.2e-104 383.3 315 67.6
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 3.8e-104 382.5 354 60.7
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 3.8e-104 382.5 286 69.9
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 1.1e-103 380.9 287 71.1
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 1.1e-103 380.9 275 74.9
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 1.4e-103 380.6 418 55.7
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 3.2e-103 379.4 287 71.1
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 3.2e-103 379.4 340 61.8
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 4.2e-103 379.0 349 61.9
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 2.1e-102 376.7 364 59.3
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 5.7e-100 368.6 406 56.4
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 1.6e-99 367.1 345 59.1
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 4.8e-99 365.5 279 70.3
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 1.8e-98 363.6 318 63.2
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 3.8e-96 355.9 316 64.9
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 3.8e-96 355.9 439 49.4
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 3.0e-93 346.3 247 73.7
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 3.0e-93 346.3 247 73.7
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 1.3e-91 340.9 349 56.7
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 4.1e-90 335.9 285 62.8
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 2.6e-89 333.2 280 68.9
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 4.2e-87 325.9 256 72.7
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 7.2e-87 325.1 255 66.7
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 7.4e-84 315.1 198 81.3
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 1.3e-83 314.3 277 65.7
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 6.3e-83 312.0 268 65.3
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.0e-77 294.7 233 69.5
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 9.7e-76 288.1 274 54.4
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 1.3e-75 287.7 203 75.9
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 4.5e-73 279.3 279 54.5
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 8.5e-72 275.0 264 54.5
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 9.4e-71 271.6 278 53.6
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 4.7e-70 269.2 311 53.4
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 4.0e-69 266.2 269 50.6
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 5.2e-69 265.8 275 53.1
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 6.3e-67 258.8 317 50.2
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 9.1e-66 255.0 218 67.0
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 8.6e-56 221.9 171 72.5
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 4.7e-54 216.1 210 58.6
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 2.3e-53 213.8 179 64.2
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 1.3e-51 208.0 258 45.7
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 1.2e-49 201.4 301 41.9
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 1.7e-48 197.6 343 39.7
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 6.1e-46 189.1 206 55.8
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 7.0e-42 175.6 297 38.0
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 4.9e-27 126.3 98 70.4
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 3.4e-20 103.6 123 56.1
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 4.9e-19 99.8 139 48.2
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 4.1e-18 96.7 72 69.4
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 2.5e-15 87.4 57 82.5
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 4.3e-15 86.7 52 90.4
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.4e-13 81.6 61 63.9
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 2.1e-09 67.8 58 56.9
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 2.3e-08 64.3 40 70.0
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 3.9e-08 63.5 42 69.0
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 5.1e-08 63.2 94 41.5
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 1.5e-07 61.6 87 48.3
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 2.1e-06 57.8 164 34.8


User provided reference genes

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