Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24376 Striga asiatica HOM05D001589 ORTHO05D001529 1.3e-73 279.6 138 100.0
SalBow8G0973 Salvia bowleyana HOM05D001589 ORTHO05D001529 9.4e-37 157.1 131 65.6
MSTRG.14991 Avicennia marina HOM05D001589 ORTHO05D001529 1.7e-33 146.4 137 59.9
Hma1.2p1_0713F.1_g207820 Hydrangea macrophylla HOM05D001589 ORTHO05D001529 1.8e-32 142.9 133 56.4
CARHR043960 Cardamine hirsuta HOM05D001589 ORTHO05D001529 2.4e-32 142.5 119 59.7
Sopen07g030320 Solanum pennellii HOM05D001589 ORTHO05D001529 5.9e-31 137.9 133 54.9
Peaxi162Scf00111g01226 Petunia axillaris HOM05D001589 ORTHO05D001529 7.7e-31 137.5 116 58.6
Lj8A144T70 Lonicera japonica HOM05D001589 ORTHO05D001529 1.7e-30 136.3 115 56.5
Dinv13350 Davidia involucrata HOM05D001589 ORTHO05D001529 2.9e-30 135.6 115 56.5
THA.LOC104810406 Tarenaya hassleriana HOM05D001589 ORTHO05D001529 5.0e-30 134.8 104 60.6
Oeu050684.1 Olea europaea HOM05D001589 ORTHO05D001529 8.6e-30 134.0 83 71.1
CiPaw.11G154500 Carya illinoinensis HOM05D001589 ORTHO05D001529 1.5e-29 133.3 117 57.3
AL1G62340 Arabidopsis lyrata HOM05D001589 ORTHO05D001529 1.9e-29 132.9 119 53.8
Eucgr.F01375 Eucalyptus grandis HOM05D001589 ORTHO05D001529 1.9e-29 132.9 122 58.2
Solyc07g062060.3 Solanum lycopersicum HOM05D001589 ORTHO05D001529 1.9e-29 132.9 133 54.1
Ciclev10022321m.g Citrus clementina HOM05D001589 ORTHO05D001529 3.3e-29 132.1 92 66.3
Nitab4.5_0003618g0050 Nicotiana tabacum HOM05D001589 ORTHO05D001529 4.2e-29 131.7 116 57.8
Sed0016813 Sechium edule HOM05D001589 ORTHO05D001529 7.2e-29 131.0 91 64.8
Manes.03G090600 Manihot esculenta HOM05D001589 ORTHO05D001529 1.2e-28 130.2 82 68.3
CAN.G375.60 Capsicum annuum HOM05D001589 ORTHO05D001529 1.6e-28 129.8 78 73.1
Thecc.07G148600 Theobroma cacao HOM05D001589 ORTHO05D001529 2.1e-28 129.4 134 47.8
Nn3g20898 Nelumbo nucifera HOM05D001589 ORTHO05D001529 2.8e-28 129.0 82 68.3
TAR626G1952 Trochodendron aralioides HOM05D001589 ORTHO05D001529 3.6e-28 128.6 133 52.6
BcaB07g33310 Brassica carinata HOM05D001589 ORTHO05D001529 4.7e-28 128.3 123 52.0
MBI07_g07815_MAGBIO Magnolia biondii HOM05D001589 ORTHO05D001529 4.7e-28 128.3 98 63.3
Gohir.A08G233400 Gossypium hirsutum HOM05D001589 ORTHO05D001529 6.1e-28 127.9 86 67.4
TWI77G0954 Tripterygium wilfordii HOM05D001589 ORTHO05D001529 6.1e-28 127.9 114 56.1
CSS0020260 Camellia sinensis var. sinensis HOM05D001589 ORTHO05D001529 8.0e-28 127.5 133 53.4
AT1G53670 Arabidopsis thaliana HOM05D001589 ORTHO05D001529 1.0e-27 127.1 118 53.4
CANSAT56G0134 Cannabis sativa HOM05D001589 ORTHO05D001529 1.0e-27 127.1 131 53.4
Sp1g40200 Schrenkiella parvula HOM05D001589 ORTHO05D001529 1.0e-27 127.1 107 54.2
BcaC08g43548 Brassica carinata HOM05D001589 ORTHO05D001529 1.4e-27 126.7 126 54.0
A06p00880 Brassica napus HOM05D001589 ORTHO05D001529 1.4e-27 126.7 126 53.2
C06p09450 Brassica napus HOM05D001589 ORTHO05D001529 1.4e-27 126.7 126 53.2
BolC6t36016H Brassica oleracea HOM05D001589 ORTHO05D001529 1.4e-27 126.7 126 53.2
BraSC324t45964Z Brassica rapa HOM05D001589 ORTHO05D001529 1.4e-27 126.7 126 53.2
Actinidia12612 Actinidia chinensis HOM05D001589 ORTHO05D001529 1.8e-27 126.3 133 52.6
Aa31LG10G1590 Aethionema arabicum HOM05D001589 ORTHO05D001529 1.8e-27 126.3 122 51.6
Carub.0001s4294 Capsella rubella HOM05D001589 ORTHO05D001529 1.8e-27 126.3 120 54.2
PGSC0003DMG400007084 Solanum tuberosum HOM05D001589 ORTHO05D001529 1.8e-27 126.3 78 69.2
CDE02G1502 Ceratophyllum demersum HOM05D001589 ORTHO05D001529 3.0e-27 125.6 88 68.2
Thhalv10012040m.g Eutrema salsugineum HOM05D001589 ORTHO05D001529 3.0e-27 125.6 81 65.4
GSVIVG01014075001 Vitis vinifera HOM05D001589 ORTHO05D001529 3.0e-27 125.6 79 73.4
arahy.Tifrunner.gnm1.ann1.X54UNA Arachis hypogaea HOM05D001589 ORTHO05D001529 4.0e-27 125.2 113 54.9
FvH4_3g28950 Fragaria vesca HOM05D001589 ORTHO05D001529 4.0e-27 125.2 115 57.4
VMungo1127G0572 Vigna mungo HOM05D001589 ORTHO05D001529 4.0e-27 125.2 87 67.8
COL.COLO4_17392 Corchorus olitorius HOM05D001589 ORTHO05D001529 5.2e-27 124.8 81 69.1
Nitab4.5_0001140g0130 Nicotiana tabacum HOM05D001589 ORTHO05D001529 5.2e-27 124.8 116 55.2
QL08p023026 Quercus lobata HOM05D001589 ORTHO05D001529 5.2e-27 124.8 78 69.2
Atru.chr2.1823 Acer truncatum HOM05D001589 ORTHO05D001529 6.8e-27 124.4 89 65.2
FAN16G1305 Fragaria x ananassa HOM05D001589 ORTHO05D001529 6.8e-27 124.4 115 57.4
RhsimUnG0077000 Rhododendron simsii HOM05D001589 ORTHO05D001529 6.8e-27 124.4 78 71.8
ECA236G3041 Erigeron canadensis HOM05D001589 ORTHO05D001529 8.9e-27 124.0 121 53.7
Prupe.4G154300 Prunus persica HOM05D001589 ORTHO05D001529 8.9e-27 124.0 89 64.0
RcHm_v2.0_Chr5g0051791 Rosa chinensis HOM05D001589 ORTHO05D001529 1.2e-26 123.6 115 56.5
Aqoxy4G00142 Aquilegia oxysepala HOM05D001589 ORTHO05D001529 1.5e-26 123.2 98 64.3
Gohir.D08G253600 Gossypium hirsutum HOM05D001589 ORTHO05D001529 1.5e-26 123.2 94 62.8
Gorai.004G270500 Gossypium raimondii HOM05D001589 ORTHO05D001529 1.5e-26 123.2 94 62.8
Sc16g0007800 Simmondsia chinensis HOM05D001589 ORTHO05D001529 1.5e-26 123.2 84 67.9
Glyma.08G236000 Glycine max HOM05D001589 ORTHO05D001529 2.0e-26 122.9 89 62.9
arahy.Tifrunner.gnm1.ann1.EFB7JN Arachis hypogaea HOM05D001589 ORTHO05D001529 2.6e-26 122.5 110 55.5
AUR62019677 Chenopodium quinoa HOM05D001589 ORTHO05D001529 2.6e-26 122.5 133 46.6
FAN25G2003 Fragaria x ananassa HOM05D001589 ORTHO05D001529 2.6e-26 122.5 113 57.5
Phvul.011G173000 Phaseolus vulgaris HOM05D001589 ORTHO05D001529 2.6e-26 122.5 87 65.5
Rhsim06G0212900 Rhododendron simsii HOM05D001589 ORTHO05D001529 2.6e-26 122.5 78 70.5
Cc05_g10560 Coffea canephora HOM05D001589 ORTHO05D001529 4.4e-26 121.7 78 66.7
CsaV3_4G032740 Cucumis sativus L. HOM05D001589 ORTHO05D001529 4.4e-26 121.7 90 62.2
HanXRQChr15g0495351 Helianthus annuus HOM05D001589 ORTHO05D001529 5.7e-26 121.3 85 64.7
Lalb_Chr03g0031391 Lupinus albus HOM05D001589 ORTHO05D001529 5.7e-26 121.3 98 57.1
PSO675G7432 Papaver somniferum HOM05D001589 ORTHO05D001529 5.7e-26 121.3 116 56.0
PGR083G1294 Punica granatum HOM05D001589 ORTHO05D001529 5.7e-26 121.3 93 66.7
Sabra11G0100400 Salix brachista HOM05D001589 ORTHO05D001529 9.8e-26 120.6 82 64.6
HPP92_003910 Vanilla planifolia HOM05D001589 ORTHO05D001529 1.3e-25 120.2 100 60.0
AUR62013936 Chenopodium quinoa HOM05D001589 ORTHO05D001529 1.7e-25 119.8 111 50.5
DCAR_017585 Daucus carota HOM05D001589 ORTHO05D001529 1.7e-25 119.8 82 68.3
Lj3g0024436 Lotus japonicus HOM05D001589 ORTHO05D001529 1.7e-25 119.8 87 63.2
Lsat_1_v5_gn_7_100320 Lactuca sativa HOM05D001589 ORTHO05D001529 2.2e-25 119.4 84 65.5
Potri.011G114300 Populus trichocarpa HOM05D001589 ORTHO05D001529 2.9e-25 119.0 83 66.3
Psat4g135160 Pisum sativum HOM05D001589 ORTHO05D001529 3.7e-25 118.6 96 60.4
TPR.G722 Trifolium pratense HOM05D001589 ORTHO05D001529 6.3e-25 117.9 87 64.4
Ca_12746_v3 Cicer arietinum L. HOM05D001589 ORTHO05D001529 8.3e-25 117.5 95 61.1
Medtr8g461030 Medicago truncatula HOM05D001589 ORTHO05D001529 8.3e-25 117.5 87 65.5
Duzib187G0820 Durio zibethinus HOM05D001589 ORTHO05D001529 1.4e-24 116.7 92 58.7
FAN11G0595 Fragaria x ananassa HOM05D001589 ORTHO05D001529 5.4e-24 114.8 93 58.1
Zm00001eb280080 Zea mays HOM05D001589 ORTHO05D001529 7.0e-24 114.4 89 61.8
CDE02G3407 Ceratophyllum demersum HOM05D001589 ORTHO05D001529 1.2e-23 113.6 56 82.1
Migut.M00686 Erythranthe guttata HOM05D001589 ORTHO05D001529 1.6e-23 113.2 59 79.7
Os06g0472000 Oryza sativa ssp. japonica HOM05D001589 ORTHO05D001529 2.7e-23 112.5 56 82.1
MD03G1251900 Malus domestica HOM05D001589 ORTHO05D001529 7.8e-23 110.9 95 52.6
MELO3C016676.2 Cucumis melo HOM05D001589 ORTHO05D001529 1.0e-22 110.5 64 68.8
AagrBONN_evm.TU.Sc2ySwM_344.1824 Anthoceros agrestis HOM05D001589 ORTHO05D001529 3.9e-22 108.6 81 59.3
Cpa.g.sc77.105 Carica papaya HOM05D001589 ORTHO05D001529 5.0e-22 108.2 89 58.4
HPP92_003913 Vanilla planifolia HOM05D001589 ORTHO05D001529 4.3e-21 105.1 56 76.8
Duzib213G0279 Durio zibethinus HOM05D001589 ORTHO05D001529 9.5e-21 104.0 56 76.8
Mapoly0057s0057 Marchantia polymorpha HOM05D001589 ORTHO05D001529 1.2e-20 103.6 82 54.9
PSO541G3834 Papaver somniferum HOM05D001589 ORTHO05D001529 3.6e-20 102.1 118 50.0
Mapoly0057s0060 Marchantia polymorpha HOM05D001589 ORTHO05D001529 4.7e-20 101.7 84 57.1
SMO116G0474 Selaginella moellendorffii HOM05D001589 ORTHO05D001529 3.1e-19 99.0 58 69.0
Pp3c6_10330 Physcomitrium patens HOM05D001589 ORTHO05D001529 1.2e-18 97.1 63 63.5
Haze_08451 Corylus avellana HOM05D001589 ORTHO05D001529 3.9e-14 82.0 98 50.0
CBR_g41095 Chara braunii HOM05D001589 ORTHO05D001529 3.6e-12 75.5 60 51.7
CSS0038019 Camellia sinensis var. sinensis HOM05D016091 ORTHO05D001529 3.1e-11 72.4 110 44.5
Hund10393 Selenicereus undatus HOM05D001589 ORTHO05D001529 4.0e-11 72.0 107 40.2
ClCG11G017090 Citrullus lanatus HOM05D001589 ORTHO05D001529 2.4e-08 62.8 38 68.4
CSS0015758 Camellia sinensis var. sinensis HOM05D001589 ORTHO05D001529 3.2e-08 62.4 26 88.5
FAN21G3238 Fragaria x ananassa HOM05D001589 ORTHO05D001529 3.2e-08 62.4 26 88.5
vmacro11985 Vaccinium macrocarpon HOM05D001589 ORTHO05D001529 3.5e-07 58.9 49 59.2
Pp3c27_120 Physcomitrium patens HOM05D001589 ORTHO05D001529 4.6e-07 58.5 54 48.1
SGA_v2.0_scaffold142G35640 Striga asiatica HOM05D001589 ORTHO05D001529 4.6e-07 58.5 54 48.1
TWI59G1226 Tripterygium wilfordii HOM05D001589 ORTHO05D001529 6.0e-07 58.2 113 34.5
FAN12G1291 Fragaria x ananassa HOM05D001589 ORTHO05D001529 7.8e-07 57.8 54 46.3
CARHR252730 Cardamine hirsuta HOM05D001589 ORTHO05D001529 1.0e-06 57.4 53 47.2
Medtr2g020930 Medicago truncatula HOM05D001589 ORTHO05D001529 1.0e-06 57.4 54 48.1
AT4G04800 Arabidopsis thaliana HOM05D001589 ORTHO05D001529 1.3e-06 57.0 53 47.2
FAN07G1883 Fragaria x ananassa HOM05D001589 ORTHO05D001529 1.3e-06 57.0 54 48.1
Peaxi162Scf00299g00231 Petunia axillaris HOM05D001589 ORTHO05D001529 1.3e-06 57.0 54 48.1
Prupe.1G147300 Prunus persica HOM05D001589 ORTHO05D001529 1.3e-06 57.0 54 46.3
Actinidia29268 Actinidia chinensis HOM05D001589 ORTHO05D001529 1.7e-06 56.6 121 33.9
AagrBONN_evm.TU.Sc2ySwM_344.851 Anthoceros agrestis HOM05D001589 ORTHO05D001529 1.7e-06 56.6 102 37.3
A08p15480 Brassica napus HOM05D001589 ORTHO05D001529 1.7e-06 56.6 53 49.1
BraA08t33524Z Brassica rapa HOM05D001589 ORTHO05D001529 1.7e-06 56.6 53 49.1
Migut.B00511 Erythranthe guttata HOM05D001589 ORTHO05D001529 2.3e-06 56.2 98 36.7
Thhalv10029054m.g Eutrema salsugineum HOM05D001589 ORTHO05D001529 2.3e-06 56.2 53 47.2
FvH4_4g13910 Fragaria vesca HOM05D001589 ORTHO05D001529 2.3e-06 56.2 54 46.3
Gohir.D02G233900 Gossypium hirsutum HOM05D001589 ORTHO05D001529 2.3e-06 56.2 57 45.6
Gorai.005G261900 Gossypium raimondii HOM05D001589 ORTHO05D001529 2.3e-06 56.2 57 45.6
Sed0000022 Sechium edule HOM05D001589 ORTHO05D001529 2.3e-06 56.2 54 46.3
arahy.Tifrunner.gnm1.ann1.2I8X29 Arachis hypogaea HOM05D001589 ORTHO05D001529 3.0e-06 55.8 54 48.1
MSTRG.20247 Avicennia marina HOM05D001589 ORTHO05D001529 3.0e-06 55.8 54 46.3
BraA03t14372Z Brassica rapa HOM05D001589 ORTHO05D001529 3.0e-06 55.8 53 47.2
Cc03_g02760 Coffea canephora HOM05D001589 ORTHO05D001529 3.0e-06 55.8 54 46.3
RcHm_v2.0_Chr4g0395581 Rosa chinensis HOM05D001589 ORTHO05D001529 3.0e-06 55.8 54 46.3
RcHm_v2.0_Chr4g0419881 Rosa chinensis HOM05D001589 ORTHO05D001529 3.0e-06 55.8 54 46.3
Aa31LG6G3850 Aethionema arabicum HOM05D001589 ORTHO05D001529 3.9e-06 55.5 53 47.2
arahy.Tifrunner.gnm1.ann1.Y5A610 Arachis hypogaea HOM05D001589 ORTHO05D001529 3.9e-06 55.5 54 48.1
CAN.G848.3 Capsicum annuum HOM05D001589 ORTHO05D001529 3.9e-06 55.5 54 46.3
Ca_18418_v3 Cicer arietinum L. HOM05D001589 ORTHO05D001529 3.9e-06 55.5 54 48.1
MD13G1177800 Malus domestica HOM05D001589 ORTHO05D001529 3.9e-06 55.5 54 44.4
TPR.G18020 Trifolium pratense HOM05D001589 ORTHO05D001529 3.9e-06 55.5 54 48.1
Actinidia23454 Actinidia chinensis HOM05D001589 ORTHO05D001529 5.1e-06 55.1 54 46.3
Aa31LG6G3840 Aethionema arabicum HOM05D001589 ORTHO05D001529 5.1e-06 55.1 53 47.2
arahy.Tifrunner.gnm1.ann1.XHTA8R Arachis hypogaea HOM05D001589 ORTHO05D001529 5.1e-06 55.1 54 48.1
MELO3C006583.2 Cucumis melo HOM05D001589 ORTHO05D001529 5.1e-06 55.1 54 46.3
Aa31LG9G9670 Aethionema arabicum HOM05D001589 ORTHO05D001529 6.6e-06 54.7 54 46.3
A03p52990 Brassica napus HOM05D001589 ORTHO05D001529 6.6e-06 54.7 53 47.2
COL.COLO4_17849 Corchorus olitorius HOM05D001589 ORTHO05D001529 6.6e-06 54.7 54 48.1
Sp6g04140 Schrenkiella parvula HOM05D001589 ORTHO05D001529 6.6e-06 54.7 53 47.2
Carub.0006s3272 Capsella rubella HOM05D001589 ORTHO05D001529 8.6e-06 54.3 53 47.2
CARHR107520 Cardamine hirsuta HOM05D001589 ORTHO05D001529 8.6e-06 54.3 54 42.6
Ca_18433_v3 Cicer arietinum L. HOM05D001589 ORTHO05D001529 8.6e-06 54.3 129 32.6
Manes.15G020200 Manihot esculenta HOM05D001589 ORTHO05D001529 8.6e-06 54.3 54 46.3
Nitab4.5_0009020g0050 Nicotiana tabacum HOM05D001589 ORTHO05D001529 8.6e-06 54.3 54 48.1
Psat1g185480 Pisum sativum HOM05D001589 ORTHO05D001529 8.6e-06 54.3 54 46.3


User provided reference genes

Program Settings