Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 9.8e-272 939.5 459 100.0
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 4.0e-217 758.1 477 78.6
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 7.6e-216 753.8 473 79.9
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 3.8e-199 698.4 475 72.6
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.9e-198 696.0 472 73.3
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 3.2e-198 695.3 470 73.4
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.6e-197 693.0 475 71.6
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 4.6e-197 691.4 546 65.0
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 4.6e-197 691.4 473 74.0
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 6.0e-197 691.0 470 72.8
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 3.0e-196 688.7 459 74.5
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 3.0e-196 688.7 518 69.5
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.9e-195 686.0 476 71.4
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.3e-195 685.3 469 72.7
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.4e-195 684.1 465 71.8
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 7.4e-195 684.1 475 70.9
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.6e-194 682.9 465 72.3
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 3.7e-194 681.8 473 72.1
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 8.2e-194 680.6 472 70.8
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.1e-193 680.2 467 71.7
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.2e-192 676.8 473 71.0
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 3.4e-192 675.2 454 73.1
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 1.7e-191 672.9 477 69.2
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 2.2e-191 672.5 474 70.9
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 2.2e-191 672.5 471 70.9
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 2.9e-191 672.2 478 71.1
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 6.5e-191 671.0 472 69.9
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 6.5e-191 671.0 474 70.3
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 8.5e-191 670.6 470 71.5
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 7.2e-190 667.5 473 68.9
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 1.2e-189 666.8 469 69.3
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 7.9e-189 664.1 465 70.5
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.0e-188 663.7 467 70.0
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 3.0e-188 662.1 473 68.7
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 3.9e-188 661.8 468 68.6
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 5.1e-188 661.4 471 69.6
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 5.1e-188 661.4 473 70.0
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 6.7e-188 661.0 476 66.8
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 6.7e-188 661.0 473 69.8
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-187 660.2 473 69.8
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 1.9e-187 659.4 473 68.3
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 2.5e-187 659.1 468 68.8
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 2.5e-187 659.1 473 67.4
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.3e-187 658.7 480 66.7
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 5.7e-187 657.9 474 69.8
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 7.4e-187 657.5 466 70.6
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 9.7e-187 657.1 470 68.7
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 9.7e-187 657.1 472 69.5
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.3e-186 656.8 471 67.5
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 1.6e-186 656.4 473 67.2
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.6e-186 656.4 472 69.5
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 2.2e-186 656.0 472 69.3
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.4e-185 652.5 474 67.3
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 4.1e-185 651.7 473 68.7
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.1e-185 650.6 473 68.7
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 2.6e-184 649.0 469 68.2
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 5.9e-184 647.9 470 68.7
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 7.7e-184 647.5 466 68.7
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.1e-182 643.7 479 67.2
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 4.2e-182 641.7 462 69.5
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 9.4e-182 640.6 466 68.2
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 3.0e-180 635.6 471 67.1
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 3.9e-180 635.2 471 66.7
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 8.8e-180 634.0 470 66.8
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.5e-179 633.3 459 69.1
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 5.7e-179 631.3 444 69.1
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 7.4e-179 630.9 469 68.0
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.7e-178 629.8 475 67.4
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.8e-178 629.0 439 69.5
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.4e-177 626.7 477 66.9
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 1.0e-175 620.5 470 66.2
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.7e-173 612.5 447 69.1
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 6.1e-173 611.3 462 65.2
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 7.9e-173 610.9 449 68.2
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 7.9e-173 610.9 426 70.9
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 7.9e-173 610.9 475 65.7
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.4e-172 610.1 472 66.1
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 2.3e-172 609.4 472 65.9
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.5e-171 606.7 474 65.2
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 4.4e-171 605.1 466 66.1
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 4.4e-171 605.1 431 70.8
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.3e-170 603.6 469 65.5
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 1.7e-170 603.2 470 65.5
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 3.7e-170 602.1 469 65.5
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 4.8e-170 601.7 469 66.1
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.1e-169 600.5 465 65.2
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 4.1e-169 598.6 427 69.3
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 7.0e-169 597.8 472 64.8
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.1e-169 597.4 463 65.9
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 1.2e-168 597.0 469 65.7
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.2e-168 597.0 466 63.5
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.0e-167 594.0 474 63.5
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 2.9e-167 592.4 470 65.1
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 2.9e-167 592.4 470 65.1
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 2.9e-167 592.4 475 63.2
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 8.5e-167 590.9 470 65.1
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.9e-166 589.7 467 63.4
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 7.2e-166 587.8 470 64.9
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.4e-164 583.6 479 64.1
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.4e-164 583.6 414 72.2
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.8e-164 583.2 502 59.4
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.2e-163 580.5 449 66.4
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 7.7e-160 567.8 522 55.2
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.2e-159 566.2 414 66.2
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 6.8e-156 554.7 440 64.1
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 6.3e-154 548.1 416 64.2
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 7.7e-152 541.2 461 61.8
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 7.2e-150 534.6 467 60.8
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 2.8e-146 522.7 367 68.9
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.1e-142 510.8 483 55.5
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.5e-142 507.7 458 60.0
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 2.1e-141 506.5 515 52.6
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.0e-139 500.0 346 70.8
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 2.4e-137 493.0 496 53.6
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 1.3e-135 487.3 466 55.6
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.5e-134 483.0 451 56.1
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.2e-130 469.9 469 54.4
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.2e-130 469.9 360 65.6
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 3.2e-121 439.5 546 45.1
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.4e-113 412.1 449 50.6
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 6.9e-100 368.6 319 62.4
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 6.9e-100 368.6 270 68.5
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 5.4e-97 359.0 236 74.2
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 2.8e-93 346.7 473 44.2
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 4.5e-91 339.3 305 58.4
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 2.4e-84 317.0 436 46.6
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 1.1e-81 308.1 260 61.9
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.4e-81 307.8 466 38.4
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.5e-78 297.0 275 60.4
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 4.3e-78 296.2 381 42.8
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 4.5e-75 286.2 203 66.0
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 3.4e-67 260.0 436 39.7
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.8e-60 237.7 202 62.4
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.2e-59 235.0 499 35.1
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.2e-53 214.2 167 58.7
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 1.0e-50 205.3 183 57.4
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.6e-48 198.0 174 57.5
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.7e-48 197.2 265 44.5
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.7e-48 196.4 169 58.0
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.3e-47 194.1 172 58.1
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.7e-47 192.6 110 79.1
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 7.5e-46 189.1 110 77.3
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.8e-45 187.2 110 76.4
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 5.5e-41 172.9 202 48.0
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 8.0e-40 169.1 124 66.1
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.7e-37 160.2 110 68.2
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 1.7e-34 151.4 112 65.2
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.3e-34 151.0 107 67.3
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.7e-32 143.3 320 32.2
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 1.2e-30 138.7 91 69.2
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 3.4e-30 137.1 116 57.8
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.4e-28 131.7 67 94.0
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 3.8e-26 123.6 119 52.1
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 3.7e-21 107.1 125 51.2
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 5.4e-20 103.2 65 73.8
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 4.9e-13 80.1 58 65.5
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 5.4e-12 76.6 80 53.8
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 4.3e-09 67.0 41 78.0
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 4.0e-07 60.5 45 64.4
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 8.9e-07 59.3 31 90.3
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 2.0e-06 58.2 31 87.1


User provided reference genes

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