Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.3e-244 849.4 439 100.0
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.6e-207 726.1 434 85.7
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 2.8e-207 725.3 438 87.0
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.1e-202 709.1 433 84.8
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 6.0e-202 707.6 433 84.5
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 5.1e-193 677.9 434 83.6
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.3e-185 652.5 433 78.1
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.7e-172 609.8 423 75.4
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 1.4e-171 606.7 437 74.1
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 3.9e-169 598.6 428 73.8
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.1e-168 597.0 424 74.3
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.3e-167 593.6 458 70.1
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 5.3e-166 588.2 426 73.7
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 1.7e-164 583.2 439 71.5
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.9e-164 582.4 429 72.5
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.8e-164 582.0 425 72.0
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 6.4e-164 581.3 425 72.5
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 6.4e-164 581.3 425 72.0
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.4e-163 580.1 425 72.0
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 3.2e-163 578.9 334 88.0
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.2e-163 578.6 405 74.8
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 4.2e-163 578.6 420 73.6
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 7.1e-163 577.8 425 73.9
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 3.5e-162 575.5 430 71.6
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.5e-162 575.5 421 72.7
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 1.3e-161 573.5 424 71.0
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 1.8e-161 573.2 424 72.9
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 3.9e-161 572.0 448 69.2
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.5e-160 570.1 423 70.7
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 3.3e-160 568.9 425 69.4
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 2.1e-159 566.2 436 69.0
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.4e-158 563.5 427 70.7
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 1.8e-158 563.1 425 70.6
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 5.8e-157 558.1 438 68.5
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 2.9e-156 555.8 436 67.4
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 2.9e-156 555.8 430 68.6
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 8.4e-156 554.3 430 69.1
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 8.4e-156 554.3 435 69.7
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 1.1e-155 553.9 427 68.6
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 5.5e-155 551.6 425 69.6
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 5.5e-155 551.6 425 68.9
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 6.1e-154 548.1 430 68.8
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 2.3e-153 546.2 426 69.7
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 3.0e-153 545.8 426 68.1
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 3.0e-153 545.8 383 74.4
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 5.1e-153 545.0 431 67.1
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 5.1e-153 545.0 423 68.1
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 2.5e-152 542.7 434 69.4
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 2.5e-152 542.7 426 68.3
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 2.5e-152 542.7 425 68.5
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.3e-152 542.0 426 70.4
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 5.7e-152 541.6 445 66.5
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 2.2e-151 539.7 424 68.2
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.8e-150 536.6 420 67.6
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 7.7e-149 531.2 384 72.4
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 1.0e-148 530.8 427 66.7
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.3e-148 530.4 340 78.5
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 3.8e-148 528.9 441 64.4
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 5.0e-148 528.5 428 66.1
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 7.2e-147 524.6 420 67.1
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 9.4e-147 524.2 426 64.3
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 1.2e-146 523.9 393 71.0
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 3.0e-145 519.2 420 66.7
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 3.0e-145 519.2 393 70.5
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 3.9e-145 518.8 424 65.1
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 2.0e-144 516.5 428 65.9
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 3.7e-143 512.3 443 65.0
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 4.8e-143 511.9 426 64.6
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.4e-142 510.4 423 62.6
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.8e-142 510.0 428 65.2
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 2.4e-142 509.6 428 64.7
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 6.9e-142 508.1 431 62.6
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.2e-141 507.3 425 66.6
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.2e-141 507.3 426 65.7
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 2.6e-141 506.1 434 64.1
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 7.7e-141 504.6 425 62.8
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 7.7e-141 504.6 430 65.3
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 1.1e-139 500.7 409 65.3
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 1.1e-139 500.7 413 62.7
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 1.1e-139 500.7 426 63.1
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.1e-139 500.7 456 61.6
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 1.4e-139 500.4 454 58.6
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 1.9e-139 500.0 445 61.3
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 7.2e-139 498.0 448 61.8
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 9.4e-139 497.7 422 62.1
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.6e-138 496.9 401 67.8
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 2.1e-138 496.5 384 71.1
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 2.7e-138 496.1 419 63.2
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 3.6e-138 495.7 427 62.1
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 6.1e-138 495.0 468 60.7
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 6.1e-138 495.0 404 64.9
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.4e-137 493.8 452 61.7
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.9e-137 492.3 460 60.4
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.9e-137 492.3 460 60.9
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 1.5e-136 490.3 401 65.8
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 4.4e-136 488.8 425 63.5
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 7.4e-136 488.0 327 74.9
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 2.8e-135 486.1 408 62.3
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 3.7e-135 485.7 434 60.6
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 4.8e-135 485.3 432 61.1
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 6.3e-135 485.0 432 61.3
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 5.3e-134 481.9 385 69.1
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 9.1e-134 481.1 427 60.9
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.2e-133 480.7 427 61.6
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 1.2e-133 480.7 376 68.6
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.5e-133 480.3 437 61.8
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 3.8e-132 475.7 438 61.0
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 5.0e-132 475.3 441 61.0
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 1.1e-131 474.2 492 57.1
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 5.5e-131 471.9 400 61.2
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 4.8e-127 458.8 410 60.2
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 1.3e-124 450.7 410 59.0
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 3.2e-123 446.0 447 57.9
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 4.2e-123 445.7 389 63.2
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 1.6e-122 443.7 391 60.6
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.3e-119 434.1 405 60.0
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.7e-119 433.7 438 54.3
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.7e-119 433.7 473 53.7
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 1.4e-118 430.6 328 68.9
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 4.1e-118 429.1 432 53.7
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 5.9e-117 425.2 425 56.7
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 3.8e-116 422.5 425 56.5
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-115 421.0 432 55.3
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 5.2e-113 412.1 334 62.0
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 8.8e-113 411.4 376 59.0
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.6e-112 409.8 357 62.5
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 1.1e-110 404.4 429 52.7
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 2.3e-108 396.7 280 72.5
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 1.5e-107 394.0 434 52.8
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 3.6e-106 389.4 296 65.2
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 4.4e-104 382.5 236 78.8
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 1.4e-102 377.5 250 75.2
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 5.9e-101 372.1 352 58.8
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 9.5e-99 364.8 396 51.3
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 7.0e-94 348.6 394 51.0
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 1.7e-92 344.0 266 68.4
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 1.5e-91 340.9 348 52.0
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 2.5e-91 340.1 383 52.0
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 1.6e-90 337.4 381 52.0
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 4.7e-90 335.9 383 50.1
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 3.4e-88 329.7 347 50.1
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 9.8e-88 328.2 377 50.7
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-85 321.2 371 50.1
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 1.6e-85 320.9 371 50.1
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 1.3e-84 317.8 274 64.2
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 5.6e-83 312.4 408 46.6
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 8.9e-81 305.1 360 49.4
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 1.5e-80 304.3 354 49.7
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 5.1e-76 289.3 350 49.1
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 8.1e-74 282.0 186 74.7
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 3.8e-55 219.9 469 34.5
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 3.9e-52 209.9 425 36.2
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 1.5e-51 208.0 425 36.0
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 5.6e-51 206.1 153 68.0
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.1e-46 191.8 125 72.0
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.9e-46 191.0 200 52.5
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 7.4e-43 179.1 145 66.2
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 3.3e-35 153.7 166 51.2
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.4e-33 147.5 94 73.4
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.6e-29 134.8 84 79.8
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.5e-27 128.3 133 54.1
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 4.3e-27 126.7 155 49.7
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 5.7e-27 126.3 152 55.9
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 7.4e-27 125.9 114 53.5
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 1.2e-24 118.6 99 55.6
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 2.6e-24 117.5 68 85.3
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 4.5e-24 116.7 96 71.9
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 3.8e-23 113.6 210 38.6
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-22 111.7 94 58.5
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-22 111.7 94 56.4
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 5.5e-22 109.8 101 53.5
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 2.8e-18 97.4 312 31.1
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.1e-17 95.5 132 47.0
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 7.2e-14 82.8 49 81.6
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 1.0e-12 79.0 94 46.8
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 2.6e-11 74.3 116 38.8
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 1.7e-10 71.6 54 55.6
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 1.7e-10 71.6 54 55.6
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 5.3e-09 66.6 116 36.2
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 1.6e-08 65.1 189 32.8
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 3.5e-08 63.9 39 76.9
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 2.2e-07 61.2 81 44.4
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 5.0e-07 60.1 41 68.3


User provided reference genes

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