Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 4.6e-166 587.8 294 100.0
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 2.2e-128 462.6 295 77.6
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 1.7e-123 446.4 296 76.0
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 2.2e-123 446.0 297 74.4
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 9.1e-122 440.7 297 73.4
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 8.5e-120 434.1 297 72.4
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 2.7e-118 429.1 296 71.3
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 3.6e-118 428.7 292 73.6
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 8.8e-117 424.1 296 72.0
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 9.8e-116 420.6 291 71.8
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 2.8e-115 419.1 291 71.1
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 2.8e-115 419.1 291 71.1
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 3.7e-115 418.7 291 71.8
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 2.4e-114 416.0 291 71.1
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 5.4e-114 414.8 291 71.5
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 2.2e-112 409.5 298 70.1
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 9.4e-111 404.1 292 69.5
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 1.2e-110 403.7 295 66.1
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 1.6e-110 403.3 293 69.3
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 8.0e-110 401.0 295 68.5
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 9.8e-108 394.0 293 66.9
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.8e-107 392.5 297 66.0
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.9e-107 391.7 294 66.7
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 6.3e-107 391.3 290 67.6
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 1.8e-106 389.8 288 66.3
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 5.4e-106 388.3 296 66.9
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 5.9e-105 384.8 296 65.9
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 1.7e-104 383.3 294 65.3
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 3.8e-104 382.1 290 67.2
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 5.0e-104 381.7 286 68.2
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 6.6e-104 381.3 296 65.2
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 1.5e-103 380.2 286 67.5
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 1.5e-103 380.2 294 67.3
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 1.9e-103 379.8 286 67.1
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 2.5e-103 379.4 295 64.4
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.3e-103 379.0 288 66.3
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 3.3e-103 379.0 288 66.3
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 4.3e-103 378.6 286 67.1
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 5.6e-103 378.3 290 64.8
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 5.6e-103 378.3 286 66.8
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 5.6e-103 378.3 291 64.9
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 7.3e-103 377.9 286 65.0
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 7.3e-103 377.9 292 65.4
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 9.5e-103 377.5 290 63.8
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 9.5e-103 377.5 290 66.6
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.6e-102 376.7 286 66.4
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 1.6e-102 376.7 286 66.4
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 1.6e-102 376.7 290 65.5
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.6e-102 376.7 290 65.5
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 2.1e-102 376.3 286 65.7
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.1e-102 376.3 296 64.5
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.1e-102 376.3 288 66.0
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.1e-102 376.3 290 64.1
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 2.1e-102 376.3 290 64.5
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 2.1e-102 376.3 298 64.1
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 2.8e-102 375.9 286 66.4
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 2.8e-102 375.9 286 66.1
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 3.6e-102 375.6 290 64.8
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 3.6e-102 375.6 286 66.1
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 4.7e-102 375.2 286 66.4
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 4.7e-102 375.2 290 64.8
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 4.7e-102 375.2 288 65.3
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 6.1e-102 374.8 286 65.7
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 6.1e-102 374.8 282 67.0
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 8.0e-102 374.4 286 65.4
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 8.0e-102 374.4 286 66.1
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.0e-101 374.0 286 65.0
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 1.0e-101 374.0 288 66.0
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.0e-101 374.0 288 65.3
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 1.8e-101 373.2 286 65.7
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 2.3e-101 372.9 286 65.7
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 2.3e-101 372.9 286 65.7
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 2.3e-101 372.9 286 65.7
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 3.0e-101 372.5 288 65.6
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 4.0e-101 372.1 288 66.0
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 4.0e-101 372.1 288 65.6
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 4.0e-101 372.1 292 66.1
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 4.0e-101 372.1 298 63.8
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 6.8e-101 371.3 288 65.3
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 6.8e-101 371.3 295 63.7
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 8.9e-101 370.9 288 64.6
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 8.9e-101 370.9 292 65.8
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 1.2e-100 370.5 281 67.3
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 2.0e-100 369.8 281 66.9
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 2.0e-100 369.8 289 64.4
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 2.0e-100 369.8 290 62.4
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 4.4e-100 368.6 293 65.9
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.4e-100 368.6 292 65.4
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.4e-100 368.6 292 65.4
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 5.7e-100 368.2 293 62.8
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 5.7e-100 368.2 290 63.8
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 7.5e-100 367.9 293 63.8
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 9.8e-100 367.5 288 64.9
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.3e-99 367.1 292 65.4
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 1.3e-99 367.1 294 63.6
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 1.7e-99 366.7 290 63.4
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 1.7e-99 366.7 290 64.1
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 2.2e-99 366.3 292 63.7
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 2.2e-99 366.3 295 64.1
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 2.9e-99 365.9 281 66.5
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 2.9e-99 365.9 292 65.1
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.7e-99 365.5 287 66.6
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 4.9e-99 365.2 293 63.5
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 4.9e-99 365.2 288 62.5
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 6.4e-99 364.8 290 63.1
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 6.4e-99 364.8 291 64.3
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 8.3e-99 364.4 295 64.1
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 1.1e-98 364.0 294 64.6
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 1.8e-98 363.2 294 64.6
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 1.8e-98 363.2 288 61.8
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 1.8e-98 363.2 288 61.8
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 2.4e-98 362.8 291 63.9
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 3.2e-98 362.5 291 63.9
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 5.4e-98 361.7 283 64.7
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 7.0e-98 361.3 294 62.9
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 9.2e-98 360.9 286 62.9
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 9.2e-98 360.9 286 62.9
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 1.6e-97 360.1 291 62.5
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 2.0e-97 359.8 286 62.2
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 2.7e-97 359.4 294 61.9
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 4.6e-97 358.6 292 64.4
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.0e-96 355.1 296 62.5
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 3.3e-95 352.4 294 61.6
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 8.0e-94 347.8 289 61.6
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 8.0e-94 347.8 288 62.8
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 3.1e-93 345.9 294 60.9
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 4.0e-93 345.5 293 61.4
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 5.2e-93 345.1 291 60.5
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 1.5e-92 343.6 305 60.7
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.2e-91 339.7 294 60.5
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 2.2e-91 339.7 294 60.5
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 2.2e-91 339.7 291 61.9
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 6.4e-91 338.2 290 59.3
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 1.9e-90 336.7 293 60.8
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 2.4e-90 336.3 303 60.7
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.4e-90 336.3 277 63.2
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 3.2e-90 335.9 307 59.0
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 4.1e-90 335.5 303 60.7
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 1.2e-89 334.0 297 59.6
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 1.7e-88 330.1 286 60.1
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 6.2e-86 321.6 289 61.6
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.2e-83 313.2 250 64.8
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 9.5e-79 297.7 266 59.4
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 3.6e-78 295.8 289 55.0
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 5.2e-69 265.4 284 51.8
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 3.5e-65 252.7 281 54.1
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.3e-64 250.8 220 60.5
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 1.3e-62 244.2 197 65.0
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 2.2e-59 233.4 268 48.1
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 4.9e-59 232.3 282 46.8
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 3.3e-55 219.5 282 45.0
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 1.4e-50 204.1 146 65.8
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 9.3e-50 201.4 143 68.5
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 1.0e-48 198.0 269 43.9
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 6.7e-48 195.3 169 59.8
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.8e-45 187.2 125 69.6
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 4.1e-37 159.5 163 51.5
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 3.3e-23 113.2 102 53.9
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 1.8e-21 107.5 108 53.7
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 3.4e-20 103.2 116 50.0
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 6.5e-19 99.0 160 36.9
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 9.4e-18 95.1 95 54.7
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 2.1e-17 94.0 76 65.8
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 4.1e-13 79.7 70 52.9
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 3.6e-09 66.6 90 48.9
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 1.2e-07 61.6 68 50.0


User provided reference genes

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