Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 3.2e-139 498.4 256 100.0
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 1.6e-109 399.8 254 81.1
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 7.7e-93 344.4 268 67.5
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 2.6e-88 329.3 247 68.0
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 7.5e-80 301.2 241 65.1
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 4.1e-78 295.4 245 64.1
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 3.0e-76 289.3 244 60.2
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 3.9e-76 288.9 232 64.2
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 5.0e-76 288.5 229 64.6
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 5.6e-75 285.0 250 61.6
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 5.6e-75 285.0 250 61.2
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 1.2e-74 283.9 250 61.6
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.6e-74 283.5 241 61.0
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 1.6e-74 283.5 227 62.6
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 2.1e-74 283.1 228 64.0
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 6.2e-74 281.6 230 62.6
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 8.0e-74 281.2 234 62.8
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 8.0e-74 281.2 234 62.8
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 1.8e-73 280.0 237 62.9
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 8.9e-73 277.7 239 60.3
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 8.9e-73 277.7 229 63.8
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 1.2e-72 277.3 236 60.6
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 2.0e-72 276.6 235 63.4
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 2.0e-72 276.6 230 61.7
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 4.4e-72 275.4 232 61.2
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 4.4e-72 275.4 230 61.7
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 5.8e-72 275.0 230 63.0
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.9e-71 272.7 234 59.8
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 8.3e-71 271.2 230 60.0
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 1.1e-70 270.8 234 59.4
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 2.4e-70 269.6 239 60.3
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 2.4e-70 269.6 230 60.0
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 1.2e-69 267.3 239 60.7
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 2.1e-69 266.5 232 60.3
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 2.1e-69 266.5 258 57.0
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 4.6e-69 265.4 231 58.9
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 6.0e-69 265.0 239 59.8
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 1.0e-68 264.2 239 55.6
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.7e-68 263.5 235 57.4
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 2.3e-68 263.1 250 57.6
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 3.9e-68 262.3 235 57.4
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 5.1e-68 261.9 230 59.1
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 5.1e-68 261.9 244 55.7
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 5.1e-68 261.9 234 59.8
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 1.1e-67 260.8 228 57.0
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 1.5e-67 260.4 234 57.7
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 3.3e-67 259.2 253 56.5
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 7.3e-67 258.1 237 56.1
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 7.3e-67 258.1 240 56.2
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 1.2e-66 257.3 255 55.7
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 2.1e-66 256.5 227 57.3
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 4.7e-66 255.4 264 55.3
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 6.2e-66 255.0 233 57.9
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 8.1e-66 254.6 227 57.7
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 8.1e-66 254.6 234 59.0
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 8.1e-66 254.6 241 56.0
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 1.1e-65 254.2 255 55.7
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 1.4e-65 253.8 232 58.6
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 1.4e-65 253.8 234 56.4
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 1.8e-65 253.4 230 57.8
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 2.3e-65 253.1 242 55.0
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 3.1e-65 252.7 206 65.0
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 3.1e-65 252.7 243 55.1
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 5.2e-65 251.9 241 55.6
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 5.2e-65 251.9 239 56.9
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 6.8e-65 251.5 242 55.0
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 6.8e-65 251.5 250 53.2
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 8.9e-65 251.1 253 54.2
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 8.9e-65 251.1 243 54.7
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 8.9e-65 251.1 229 57.2
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 8.9e-65 251.1 230 56.5
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 2.6e-64 249.6 242 54.5
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 2.6e-64 249.6 232 56.5
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 4.4e-64 248.8 242 55.8
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 7.5e-64 248.1 242 54.1
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 1.3e-63 247.3 228 57.9
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 1.7e-63 246.9 235 54.5
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 2.9e-63 246.1 226 57.5
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 3.7e-63 245.7 241 54.8
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 4.9e-63 245.4 260 50.4
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.4e-62 243.0 227 55.5
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 4.1e-62 242.3 242 52.1
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 2.7e-61 239.6 254 52.8
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 6.2e-58 228.4 235 52.3
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 8.9e-57 224.6 344 40.7
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 8.4e-55 218.0 189 57.7
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 1.4e-54 217.2 239 49.8
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 2.4e-54 216.5 223 52.0
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.0e-52 211.1 232 49.6
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 1.7e-52 210.3 227 49.8
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 3.0e-52 209.5 261 46.7
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 5.1e-52 208.8 232 48.7
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 6.6e-52 208.4 232 49.1
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 8.7e-52 208.0 222 47.3
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.1e-51 207.6 234 51.3
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 9.0e-49 198.0 230 48.7
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 1.5e-48 197.2 224 46.0
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 7.6e-48 194.9 224 45.5
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 6.4e-47 191.8 237 45.1
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 2.1e-45 186.8 224 44.6
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 2.7e-45 186.4 237 46.0
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 7.8e-45 184.9 224 44.6
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 3.3e-43 179.5 226 43.8
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 3.3e-43 179.5 226 43.8
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 1.6e-42 177.2 234 47.4
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 3.4e-40 169.5 236 41.5
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 2.9e-39 166.4 178 48.3
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 2.4e-38 163.3 231 40.3
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 9.3e-38 161.4 160 50.6
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 9.3e-38 161.4 160 50.6
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.6e-37 160.6 206 45.6
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 9.6e-35 151.4 143 58.7
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 1.4e-33 147.5 136 61.0
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 3.1e-33 146.4 227 36.6
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.3e-31 141.0 227 38.8
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 1.3e-31 141.0 125 59.2
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 1.1e-27 127.9 226 34.5
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 4.0e-25 119.4 231 32.5
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 1.3e-23 114.4 231 32.9
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 1.7e-23 114.0 131 51.1
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 5.1e-20 102.4 114 50.9
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 2.5e-19 100.1 87 54.0
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 3.8e-15 86.3 80 56.2
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 4.2e-14 82.8 191 31.9
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 1.1e-11 74.7 123 35.8
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 7.4e-11 72.0 277 26.0
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 1.7e-10 70.9 210 33.3
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 1.7e-10 70.9 45 64.4
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 3.7e-10 69.7 166 31.9
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 4.8e-10 69.3 122 38.5
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 4.8e-10 69.3 122 38.5
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 8.2e-10 68.6 38 78.9
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 2.4e-09 67.0 122 37.7
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 2.4e-09 67.0 122 37.7
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 5.3e-09 65.9 122 37.7
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.7e-07 60.8 35 77.1
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.7e-07 60.8 35 77.1
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.7e-07 60.8 35 77.1
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.7e-07 60.8 35 77.1
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.7e-07 60.8 35 77.1
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 5.0e-07 59.3 35 74.3
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 6.5e-07 58.9 57 52.6
Carub.0001s2750 Capsella rubella HOM05D005295 ORTHO05D005962 8.5e-07 58.5 56 57.1
SGA_v2.0_scaffold17G08150 Striga asiatica HOM05D008771 ORTHO05D010664 2.5e-06 57.0 30 86.7
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 5.5e-06 55.8 88 43.2


User provided reference genes

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