Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 4.4e-142 508.1 279 100.0
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 4.2e-84 315.5 295 67.1
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 3.9e-82 308.9 281 67.3
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 5.7e-81 305.1 281 67.6
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 1.0e-66 257.7 265 57.4
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 1.4e-66 257.3 284 57.4
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 3.9e-66 255.8 263 59.3
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 5.7e-65 251.9 283 55.1
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 1.8e-63 246.9 292 56.8
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 2.4e-63 246.5 234 59.8
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 2.4e-63 246.5 238 62.6
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 3.1e-63 246.1 270 57.8
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 4.1e-63 245.7 282 56.4
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 1.6e-62 243.8 273 58.6
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 1.6e-62 243.8 273 58.6
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 2.0e-62 243.4 273 56.4
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 7.7e-62 241.5 280 55.0
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 1.0e-61 241.1 226 62.8
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 1.0e-61 241.1 278 56.5
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 1.7e-61 240.4 273 53.8
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 2.2e-61 240.0 275 53.8
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 2.2e-61 240.0 279 55.6
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 2.9e-61 239.6 255 56.9
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 3.8e-61 239.2 268 54.9
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 3.8e-61 239.2 284 53.5
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 6.5e-61 238.4 264 58.0
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 8.5e-61 238.0 277 54.9
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 8.5e-61 238.0 268 54.9
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 2.5e-60 236.5 226 59.3
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 4.2e-60 235.7 264 57.6
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 5.5e-60 235.3 264 56.4
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 7.2e-60 235.0 270 57.0
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 1.6e-59 233.8 262 54.6
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 1.4e-58 230.7 292 53.8
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 5.2e-58 228.8 265 56.2
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 1.2e-57 227.6 244 57.8
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 3.3e-57 226.1 260 56.2
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 3.3e-57 226.1 257 54.9
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 7.5e-57 224.9 276 51.8
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 7.5e-57 224.9 275 53.5
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 9.7e-57 224.6 280 55.0
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 9.7e-57 224.6 280 55.0
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 1.3e-56 224.2 277 53.8
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 2.8e-56 223.0 277 53.1
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 3.7e-56 222.6 268 56.0
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 8.2e-56 221.5 266 57.1
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 8.2e-56 221.5 268 53.4
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 8.2e-56 221.5 267 55.8
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 8.2e-56 221.5 285 54.7
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 8.2e-56 221.5 319 49.5
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 1.8e-55 220.3 227 60.8
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 1.8e-55 220.3 276 51.4
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 9.1e-55 218.0 262 54.2
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 2.0e-54 216.9 286 53.5
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 2.0e-54 216.9 213 61.0
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 2.7e-54 216.5 236 57.2
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 4.5e-54 215.7 244 55.7
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.3e-53 214.2 282 51.1
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 1.7e-53 213.8 282 51.4
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.7e-53 213.8 270 52.2
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 1.7e-53 213.8 287 51.6
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 2.2e-53 213.4 267 53.6
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 2.2e-53 213.4 281 50.9
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 2.9e-53 213.0 274 50.7
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 2.9e-53 213.0 274 50.7
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 2.9e-53 213.0 219 58.9
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 5.0e-53 212.2 279 52.3
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 6.5e-53 211.8 256 54.3
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.1e-52 211.1 281 50.9
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 1.5e-52 210.7 276 51.1
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 7.2e-52 208.4 270 51.9
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 9.4e-52 208.0 219 58.4
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 2.1e-51 206.8 259 51.7
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 2.1e-51 206.8 284 50.0
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 2.1e-51 206.8 270 53.7
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 4.7e-51 205.7 259 51.4
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 4.7e-51 205.7 259 51.4
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 6.1e-51 205.3 203 62.6
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 8.0e-51 204.9 284 49.6
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 8.0e-51 204.9 280 50.7
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 1.4e-50 204.1 249 53.0
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 1.8e-50 203.8 268 50.0
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 2.3e-50 203.4 277 48.7
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 4.0e-50 202.6 265 49.8
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 4.0e-50 202.6 249 51.4
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 3.4e-49 199.5 276 51.4
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 3.4e-49 199.5 274 51.5
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 5.7e-49 198.7 265 50.9
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 7.5e-49 198.4 276 50.4
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 4.1e-47 192.6 273 48.0
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 3.5e-46 189.5 270 48.1
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 5.9e-46 188.7 199 58.3
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 1.3e-45 187.6 170 64.1
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 8.6e-45 184.9 217 54.8
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.8e-42 177.2 264 49.6
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 5.2e-42 175.6 280 46.8
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 6.8e-42 175.3 270 48.9
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 7.5e-41 171.8 195 55.4
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 7.0e-39 165.2 209 51.2
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 2.0e-38 163.7 173 57.2
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 1.3e-37 161.0 154 60.4
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 8.6e-37 158.3 267 45.7
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 8.6e-37 158.3 199 53.8
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 1.1e-36 157.9 225 46.7
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 6.4e-32 142.1 266 44.0
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 1.4e-31 141.0 202 50.5
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 1.8e-31 140.6 197 47.7
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 1.8e-31 140.6 193 50.3
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 1.8e-31 140.6 128 63.3
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 2.4e-31 140.2 202 49.0
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 1.3e-29 134.4 216 43.5
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 3.9e-29 132.9 149 53.0
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 2.1e-27 127.1 128 59.4
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 6.8e-26 122.1 164 50.6
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 4.4e-25 119.4 175 45.1
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 1.4e-23 114.4 102 64.7
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 1.9e-23 114.0 134 56.7
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 1.9e-23 114.0 134 56.7
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 4.6e-22 109.4 232 39.2
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 1.7e-21 107.5 208 40.4
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 2.3e-21 107.1 229 40.6
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 6.6e-21 105.5 126 52.4
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 2.5e-20 103.6 116 59.5
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 3.1e-18 96.7 123 48.8
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 8.3e-16 88.6 74 63.5
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 3.2e-15 86.7 107 51.4
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 1.6e-14 84.3 137 44.5
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 6.6e-13 79.0 71 62.0
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 1.5e-12 77.8 138 40.6
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 5.8e-09 65.9 60 58.3
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 9.9e-09 65.1 182 29.1
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 1.9e-07 60.8 47 59.6
C01p49410 Brassica napus HOM05D005433 ORTHO05D040690 4.1e-07 59.7 144 36.1
EL10Ac1g01129 Beta vulgaris HOM05D005433 ORTHO05D006675 2.7e-06 57.0 35 80.0
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 2.7e-06 57.0 76 51.3


User provided reference genes

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