Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 0.0e+00 1384.4 781 100.0
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 1.7e-175 620.5 819 53.2
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 2.8e-154 550.1 834 51.8
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 6.1e-149 532.3 751 51.3
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 2.7e-144 516.9 765 48.8
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 8.6e-135 485.3 760 46.6
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 3.6e-133 479.9 762 48.0
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 5.7e-131 472.6 779 45.3
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.2e-130 470.7 776 46.0
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.9e-130 469.5 785 45.1
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 1.3e-127 461.5 776 44.3
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.5e-126 457.2 775 45.5
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 4.3e-118 429.9 768 43.9
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 9.8e-115 418.7 873 40.9
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 1.9e-113 414.5 826 41.0
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 2.5e-110 404.1 787 42.2
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 6.2e-109 399.4 769 40.2
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.1e-108 398.7 797 42.3
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 1.1e-108 398.7 796 41.8
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 1.1e-108 398.7 759 42.6
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 1.8e-108 397.9 810 41.6
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.6e-107 394.0 803 41.8
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.4e-105 388.3 822 40.0
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.2e-105 387.1 793 41.9
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 2.1e-104 384.4 787 44.5
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 1.0e-103 382.1 791 42.2
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.7e-103 381.3 793 42.0
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 5.1e-103 379.8 743 42.7
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 6.6e-103 379.4 756 41.7
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.5e-102 378.3 796 42.3
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.9e-102 377.9 793 42.4
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 4.3e-102 376.7 811 41.2
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 4.3e-102 376.7 814 38.9
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 7.3e-102 375.9 787 43.7
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.2e-101 375.2 788 40.2
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 1.6e-101 374.8 774 39.5
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 6.2e-101 372.9 813 39.0
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 8.1e-101 372.5 811 38.7
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.4e-100 371.7 797 41.4
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 4.0e-100 370.2 775 39.5
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 1.5e-99 368.2 783 39.6
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 2.6e-99 367.5 781 41.9
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 2.6e-99 367.5 852 40.3
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 5.8e-99 366.3 814 39.7
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 2.2e-98 364.4 805 40.4
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 2.9e-98 364.0 782 40.4
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 6.4e-98 362.8 774 39.7
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 4.2e-97 360.1 749 40.6
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 1.2e-96 358.6 799 39.8
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 2.7e-96 357.5 795 38.9
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.0e-95 355.5 801 40.4
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 2.3e-95 354.4 783 39.7
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 5.1e-95 353.2 785 38.2
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 5.1e-95 353.2 785 42.2
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.5e-94 351.7 744 38.4
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 1.9e-94 351.3 795 39.5
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 1.4e-92 345.1 792 41.0
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 9.0e-92 342.4 737 39.2
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 3.2e-89 334.0 753 41.3
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 5.4e-89 333.2 760 37.8
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 2.1e-88 331.3 781 37.4
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 2.1e-88 331.3 788 37.7
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 4.6e-88 330.1 711 38.7
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.9e-87 327.0 782 39.6
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.5e-86 325.1 787 39.8
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.6e-85 321.6 821 37.1
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.6e-85 321.6 789 36.8
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 3.7e-85 320.5 796 37.9
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.8e-85 320.1 751 39.1
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.1e-84 317.4 780 38.6
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 5.3e-84 316.6 832 39.3
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 5.3e-84 316.6 799 39.0
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 9.0e-84 315.8 784 37.2
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 9.0e-84 315.8 795 38.1
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.3e-82 312.0 766 36.2
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 8.4e-82 309.3 728 40.2
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.2e-80 305.4 759 35.3
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.6e-80 305.1 775 36.5
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 2.1e-80 304.7 744 40.7
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 4.6e-80 303.5 838 37.2
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 4.6e-80 303.5 785 41.4
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.0e-79 302.4 777 38.6
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.8e-79 301.6 756 38.2
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 3.0e-79 300.8 762 38.6
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 5.1e-79 300.1 796 36.1
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 1.6e-77 295.0 698 36.7
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 1.4e-76 292.0 787 37.5
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 3.1e-76 290.8 814 38.1
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 5.3e-76 290.0 763 37.9
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 5.3e-76 290.0 783 37.4
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 1.1e-73 282.3 801 37.7
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 4.2e-73 280.4 775 34.6
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 4.6e-72 276.9 742 39.6
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 6.0e-72 276.6 827 36.4
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 8.7e-71 272.7 754 39.5
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 8.7e-71 272.7 788 35.7
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.9e-70 271.6 718 35.4
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 3.3e-70 270.8 785 36.9
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 3.3e-70 270.8 826 35.2
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 9.7e-70 269.2 725 36.7
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.3e-69 268.9 810 34.4
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 2.1e-69 268.1 794 34.9
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 4.8e-69 266.9 737 35.7
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 2.9e-66 257.7 821 31.5
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 5.0e-66 256.9 809 33.0
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 4.6e-64 250.4 640 35.8
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 1.0e-63 249.2 705 33.5
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.3e-63 248.8 811 34.3
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 1.5e-62 245.4 712 35.7
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 7.4e-62 243.0 743 32.0
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 8.2e-61 239.6 752 33.6
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 2.4e-60 238.0 791 32.4
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 2.0e-59 235.0 724 32.6
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 2.0e-59 235.0 808 36.0
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 4.5e-59 233.8 812 32.6
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 2.7e-56 224.6 765 33.3
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 2.0e-54 218.4 787 31.1
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.6e-54 218.0 832 34.3
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 7.4e-54 216.5 764 31.0
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.7e-53 215.3 702 35.0
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 4.2e-49 200.7 638 33.2
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 1.8e-47 195.3 761 33.2
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 3.0e-47 194.5 902 29.3
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 8.2e-45 186.4 745 31.4
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 8.2e-45 186.4 699 28.9
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.6e-43 181.4 256 47.3
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 5.9e-43 180.3 785 31.8
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 1.7e-42 178.7 881 30.2
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.9e-42 177.9 699 29.6
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 8.5e-42 176.4 871 31.0
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 4.2e-41 174.1 685 30.4
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 4.2e-41 174.1 692 30.2
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 5.5e-41 173.7 686 30.5
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.4e-39 169.1 701 28.4
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.0e-39 167.5 810 28.1
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 2.6e-38 164.9 701 28.1
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 4.4e-38 164.1 735 30.6
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 5.3e-36 157.1 285 40.4
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.7e-35 154.8 621 29.6
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 3.5e-35 154.5 787 28.3
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 2.5e-33 148.3 781 29.1
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 2.5e-33 148.3 781 29.1
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 3.2e-33 147.9 812 29.2
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 7.2e-33 146.7 785 28.7
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 7.2e-33 146.7 779 28.6
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.6e-32 145.6 513 33.7
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 4.7e-32 144.1 234 45.3
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 8.8e-31 139.8 132 59.1
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 2.0e-30 138.7 189 47.6
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 5.7e-30 137.1 488 32.6
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 9.8e-30 136.3 290 35.2
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.2e-29 135.2 417 31.4
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 8.3e-29 133.3 220 45.0
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 2.4e-28 131.7 590 29.8
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.2e-27 129.4 522 32.2
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 4.5e-27 127.5 734 26.8
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 5.9e-27 127.1 255 40.0
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 1.0e-26 126.3 271 38.4
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 1.2e-22 112.8 161 49.7
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 1.5e-22 112.5 164 47.6
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 3.5e-19 101.3 126 57.1
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.0e-15 87.8 193 37.8
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 5.2e-15 87.4 112 53.6
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.4e-12 79.3 712 24.2
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.8e-12 79.0 128 39.8
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.6e-08 64.7 351 26.8
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 3.6e-08 64.7 53 71.7
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 3.1e-07 61.6 76 53.9
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 9.8e-06 56.6 271 27.3


User provided reference genes

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