Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold739G53544 Striga asiatica HOM05D007484 ORTHO05D008290 7.5e-236 820.1 401 100.0
Migut.M01212 Erythranthe guttata HOM05D007484 ORTHO05D008290 1.2e-87 327.8 405 44.2
Dinv40482 Davidia involucrata HOM05D007484 ORTHO05D008290 4.5e-79 299.3 448 38.2
SalBow8G0887 Salvia bowleyana HOM05D007484 ORTHO05D008290 3.6e-68 263.1 333 42.6
Potri.011G042900 Populus trichocarpa HOM05D007484 ORTHO05D008290 1.1e-61 241.5 456 35.5
Sabra11G0029500 Salix brachista HOM05D007484 ORTHO05D008290 9.4e-61 238.4 455 35.4
Potri.004G034500 Populus trichocarpa HOM05D007484 ORTHO05D008290 2.8e-57 226.9 457 33.5
Actinidia26998 Actinidia chinensis HOM05D007484 ORTHO05D008290 6.3e-57 225.7 377 35.0
Cfa000354 Carpinus fangiana HOM05D007484 ORTHO05D008290 1.0e-54 218.4 445 32.1
Haze_06572 Corylus avellana HOM05D007484 ORTHO05D008290 7.9e-52 208.8 445 31.2
Rhsim13G0170100 Rhododendron simsii HOM05D007484 ORTHO05D008290 1.0e-51 208.4 434 31.1
QL04p018320 Quercus lobata HOM05D007484 ORTHO05D008290 2.0e-50 204.1 442 30.8
Peaxi162Scf00149g00517 Petunia axillaris HOM05D007484 ORTHO05D008290 2.6e-50 203.8 442 29.2
Peaxi162Scf00083g00015 Petunia axillaris HOM05D007484 ORTHO05D008290 2.8e-49 200.3 445 29.0
TAR626G0438 Trochodendron aralioides HOM05D007484 ORTHO05D008290 3.1e-48 196.8 447 29.5
Nitab4.5_0000190g0090 Nicotiana tabacum HOM05D007484 ORTHO05D008290 2.0e-42 177.6 405 27.2
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 3.3e-42 176.8 394 31.0
Prupe.4G036700 Prunus persica HOM05D007484 ORTHO05D008290 9.7e-42 175.3 456 28.1
Nitab4.5_0009994g0020 Nicotiana tabacum HOM05D007484 ORTHO05D008290 1.3e-41 174.9 443 26.4
Eucgr.D00711 Eucalyptus grandis HOM05D007484 ORTHO05D008290 3.1e-40 170.2 408 30.1
Duzib192G0019 Durio zibethinus HOM05D007484 ORTHO05D008290 4.1e-40 169.9 333 30.3
Nn1g06758 Nelumbo nucifera HOM05D007484 ORTHO05D008290 5.3e-40 169.5 415 29.4
GSVIVG01003193001 Vitis vinifera HOM05D007484 ORTHO05D003151 3.8e-38 163.3 237 38.8
MSTRG.15934 Avicennia marina HOM05D007484 ORTHO05D008290 1.1e-37 161.8 220 41.4
PGSC0003DMG400043893 Solanum tuberosum HOM05D007484 ORTHO05D008290 1.1e-37 161.8 442 27.4
TWI63G0466 Tripterygium wilfordii HOM05D007484 ORTHO05D008290 1.2e-36 158.3 401 28.9
PGSC0003DMG400037537 Solanum tuberosum HOM05D007484 ORTHO05D008290 2.7e-36 157.1 442 26.0
Solyc02g079120.1 Solanum lycopersicum HOM05D007484 ORTHO05D008290 1.8e-35 154.5 446 26.2
PGR004G1436 Punica granatum HOM05D007484 ORTHO05D008290 2.0e-34 151.0 444 27.5
CANSAT56G1153 Cannabis sativa HOM05D007484 ORTHO05D008290 1.3e-33 148.3 466 23.8
MSTRG.15933 Avicennia marina HOM05D015310 ORTHO05D014910 2.2e-33 147.5 117 59.8
Medtr7g050670 Medicago truncatula HOM05D007484 ORTHO05D008290 2.2e-33 147.5 451 24.4
VMungo0540G2082 Vigna mungo HOM05D007484 ORTHO05D008290 2.2e-33 147.5 446 25.6
MD10G1303300 Malus domestica HOM05D007484 ORTHO05D008290 8.3e-33 145.6 456 27.2
Glyma.13G246100 Glycine max HOM05D007484 ORTHO05D008290 1.4e-32 144.8 450 24.7
Medtr7g076760 Medicago truncatula HOM05D007484 ORTHO05D008290 1.8e-32 144.4 455 23.7
Phvul.006G192000 Phaseolus vulgaris HOM05D007484 ORTHO05D008290 5.4e-32 142.9 447 25.3
Medtr4g088845 Medicago truncatula HOM05D007484 ORTHO05D008290 1.0e-30 138.7 443 25.3
AT1G61320 Arabidopsis thaliana HOM05D007484 ORTHO05D008290 2.9e-30 137.1 404 26.7
Aqoxy4G00756 Aquilegia oxysepala HOM05D007484 ORTHO05D008290 6.5e-30 136.0 436 26.4
AL2G15000 Arabidopsis lyrata HOM05D007484 ORTHO05D008290 8.6e-30 135.6 401 25.9
THA.LOC104809547 Tarenaya hassleriana HOM05D007484 ORTHO05D008290 8.6e-30 135.6 450 25.8
Atru.chr10.2009 Acer truncatum HOM05D007484 ORTHO05D008290 1.1e-29 135.2 442 24.0
Sp2g03170 Schrenkiella parvula HOM05D007484 ORTHO05D008290 4.2e-29 133.3 402 26.4
Lalb_Chr20g0122271 Lupinus albus HOM05D007484 ORTHO05D008290 5.5e-29 132.9 445 23.8
Medtr7g076570 Medicago truncatula HOM05D007484 ORTHO05D008290 8.0e-28 129.0 444 24.5
AT1G61330 Arabidopsis thaliana HOM05D007484 ORTHO05D008290 2.3e-27 127.5 406 24.9
Lj6g0012024 Lotus japonicus HOM05D007484 ORTHO05D008290 2.3e-27 127.5 456 23.7
Thhalv10023885m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 4.0e-27 126.7 405 24.7
Carub.0002s1106 Capsella rubella HOM05D007484 ORTHO05D008290 3.4e-26 123.6 409 25.4
Carub.0005s0816 Capsella rubella HOM05D007484 ORTHO05D008290 5.7e-26 122.9 389 26.2
Thhalv10024043m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 5.7e-26 122.9 405 22.7
CARHR051310 Cardamine hirsuta HOM05D007484 ORTHO05D008290 7.5e-26 122.5 330 25.2
BcaC08g44240 Brassica carinata HOM05D007484 ORTHO05D008290 9.8e-26 122.1 397 24.7
Thhalv10023878m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 3.7e-25 120.2 405 23.0
C06p16440 Brassica napus HOM05D007484 ORTHO05D008290 4.1e-24 116.7 407 24.1
BolC6t36847H Brassica oleracea HOM05D007484 ORTHO05D008290 4.1e-24 116.7 407 24.1
A01p30140 Brassica napus HOM05D007484 ORTHO05D008290 5.4e-24 116.3 406 24.6
TWI38G1471 Tripterygium wilfordii HOM05D007484 ORTHO05D008290 9.2e-24 115.5 345 27.0
Carub.0002s1104 Capsella rubella HOM05D007484 ORTHO05D008290 2.0e-23 114.4 408 25.7
BolC1t03792H Brassica oleracea HOM05D007484 ORTHO05D008290 2.7e-23 114.0 407 23.8
Thhalv10023845m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 3.5e-23 113.6 385 24.7
BraA01t03152Z Brassica rapa HOM05D007484 ORTHO05D008290 4.5e-23 113.2 409 23.7
AL2G15010 Arabidopsis lyrata HOM05D007484 ORTHO05D008290 3.8e-22 110.2 403 22.8
Actinidia26997 Actinidia chinensis HOM05D007484 ORTHO05D008290 5.0e-22 109.8 241 30.3
BolC1t03787H Brassica oleracea HOM05D007484 ORTHO05D008290 6.6e-22 109.4 401 23.9
unitig_62.g23170 Utricularia gibba HOM05D015310 ORTHO05D014910 1.9e-21 107.8 255 30.6
BcaC08g44241 Brassica carinata HOM05D007484 ORTHO05D008290 2.1e-20 104.4 387 24.8
Sp2g04890 Schrenkiella parvula HOM05D007484 ORTHO05D008290 6.1e-20 102.8 382 22.0
PGSC0003DMG400022354 Solanum tuberosum HOM05D007484 ORTHO05D008290 1.0e-19 102.1 282 25.2
Cpa.g.sc27.126 Carica papaya HOM05D007484 ORTHO05D008290 1.4e-19 101.7 242 28.9
Thhalv10024091m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 2.3e-19 100.9 279 25.8
Carub.0002s1107 Capsella rubella HOM05D007484 ORTHO05D008290 6.8e-19 99.4 231 29.4
Aa31LG2G9340 Aethionema arabicum HOM05D007484 ORTHO05D008290 9.8e-18 95.5 368 21.7
Thhalv10023947m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 9.8e-18 95.5 367 23.2
unitig_748.g8192 Utricularia gibba HOM05D015310 ORTHO05D014910 2.2e-17 94.4 413 23.7
Cpa.g.sc27.122 Carica papaya HOM05D007484 ORTHO05D008290 4.9e-17 93.2 240 26.7
CARHR053380 Cardamine hirsuta HOM05D007484 ORTHO05D008290 3.2e-16 90.5 190 28.4
HPP92_017621 Vanilla planifolia HOM05D000576 ORTHO05D000368 3.5e-15 87.0 261 25.3
Thhalv10023839m.g Eutrema salsugineum HOM05D007484 ORTHO05D008290 1.7e-14 84.7 245 26.5
Ciclev10008427m.g Citrus clementina HOM05D000576 ORTHO05D000368 2.3e-14 84.3 395 23.0
Thecc.06G199300 Theobroma cacao HOM05D007484 ORTHO05D008290 2.3e-14 84.3 156 30.8
unitig_748.g8195 Utricularia gibba HOM05D015310 ORTHO05D014910 6.6e-14 82.8 228 25.9
Hund23632 Selenicereus undatus HOM05D000312 ORTHO05D008290 2.5e-13 80.9 413 20.3
Sc14g0001610 Simmondsia chinensis HOM05D007484 ORTHO05D008290 3.3e-13 80.5 432 21.3
MBI18_g07609_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000368 5.6e-13 79.7 269 25.3
Ciclev10020079m.g Citrus clementina HOM05D000576 ORTHO05D000368 7.3e-13 79.3 249 26.5
unitig_748.g8191 Utricularia gibba HOM05D015310 ORTHO05D014910 1.6e-12 78.2 189 27.0
Ciclev10015410m.g Citrus clementina HOM05D000576 ORTHO05D000368 2.1e-12 77.8 340 24.7
Sp2g04880 Schrenkiella parvula HOM05D007484 ORTHO05D008290 2.8e-12 77.4 220 26.4
CSS0047483 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D008290 3.6e-12 77.0 235 27.2
unitig_26.g9617 Utricularia gibba HOM05D015310 ORTHO05D014910 4.7e-12 76.6 252 23.8
Prupe.7G069300 Prunus persica HOM05D000576 ORTHO05D000368 4.0e-11 73.6 246 27.6
MBI18_g07600_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000368 2.0e-10 71.2 428 25.0
Dinv21743 Davidia involucrata HOM05D000576 ORTHO05D000368 3.4e-10 70.5 359 23.4
MBI18_g07597_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D000368 7.5e-10 69.3 461 22.6
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.7e-09 68.2 239 25.5
C06p16450 Brassica napus HOM05D007484 ORTHO05D008290 2.2e-09 67.8 305 23.6
BolC6t36848H Brassica oleracea HOM05D007484 ORTHO05D008290 2.2e-09 67.8 305 23.6
MBI18_g06655_MAGBIO Magnolia biondii HOM05D000051 ORTHO05D000015 3.7e-09 67.0 270 27.0
PGR004G1577 Punica granatum HOM05D007484 ORTHO05D008290 6.4e-09 66.2 219 26.0
FAN19G3107 Fragaria x ananassa HOM05D000555 ORTHO05D000646 8.3e-09 65.9 392 21.7
MD02G1269100 Malus domestica HOM05D000576 ORTHO05D000368 1.9e-08 64.7 305 26.2
QL04p071108 Quercus lobata HOM05D000576 ORTHO05D000368 1.9e-08 64.7 239 25.5
RcHm_v2.0_Chr1g0330451 Rosa chinensis HOM05D000576 ORTHO05D000368 1.9e-08 64.7 396 22.7
TPR.G4556 Trifolium pratense HOM05D007484 ORTHO05D008290 1.9e-08 64.7 160 23.8
Dinv11451 Davidia involucrata HOM05D000576 ORTHO05D000368 2.4e-08 64.3 251 25.9
Dinv37215 Davidia involucrata HOM05D003242 ORTHO05D003593 3.2e-08 63.9 408 22.8
Aqoxy4G00512 Aquilegia oxysepala HOM05D000312 ORTHO05D000221 4.1e-08 63.5 229 25.3
MBI18_g41461_MAGBIO Magnolia biondii HOM05D000051 ORTHO05D000015 4.1e-08 63.5 271 26.9
QL10p004673 Quercus lobata HOM05D000576 ORTHO05D000368 4.1e-08 63.5 393 22.6
Thecc.08G187100 Theobroma cacao HOM05D000576 ORTHO05D000368 4.1e-08 63.5 254 22.8
MSTRG.11841 Avicennia marina HOM05D000312 ORTHO05D000221 5.4e-08 63.2 315 22.9
QL05p010063 Quercus lobata HOM05D001477 ORTHO05D001182 5.4e-08 63.2 237 24.5
QL10p040220 Quercus lobata HOM05D000576 ORTHO05D000368 7.0e-08 62.8 240 25.8
TAR633G1895 Trochodendron aralioides HOM05D000576 ORTHO05D000368 7.0e-08 62.8 270 24.1
A01p30150 Brassica napus HOM05D007484 ORTHO05D008290 9.2e-08 62.4 288 23.3
ECA233G4739 Erigeron canadensis HOM05D000576 ORTHO05D000368 9.2e-08 62.4 285 24.6
FvH4_1g15880 Fragaria vesca HOM05D000576 ORTHO05D000368 9.2e-08 62.4 397 21.7
FvH4_1g15890 Fragaria vesca HOM05D000576 ORTHO05D000368 9.2e-08 62.4 238 24.8
RcHm_v2.0_Chr7g0184481 Rosa chinensis HOM05D000576 ORTHO05D000368 9.2e-08 62.4 279 28.0
HanXRQChr08g0214711 Helianthus annuus HOM05D000312 ORTHO05D000221 1.2e-07 62.0 356 23.9
RcHm_v2.0_Chr2g0105201 Rosa chinensis HOM05D000576 ORTHO05D000368 1.2e-07 62.0 241 24.5
Aqoxy4G01472 Aquilegia oxysepala HOM05D000312 ORTHO05D000368 1.6e-07 61.6 243 23.5
AUR62033150 Chenopodium quinoa HOM05D000576 ORTHO05D000368 1.6e-07 61.6 191 28.3
MBI12_g29750_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D000368 1.6e-07 61.6 135 34.1
ATR0681G283 Amborella trichopoda HOM05D000312 ORTHO05D000221 2.0e-07 61.2 235 25.1
SGA_v2.0_scaffold27G11722 Striga asiatica HOM05D000312 ORTHO05D000221 2.0e-07 61.2 312 24.0
MBI18_g31599_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D000368 3.5e-07 60.5 112 33.9
TAR371G1149 Trochodendron aralioides HOM05D000312 ORTHO05D000221 3.5e-07 60.5 200 28.0
Ah.05g172260 Amaranthus hybridus HOM05D000576 ORTHO05D000368 4.6e-07 60.1 289 26.0
Lj3C972G3 Lonicera japonica HOM05D003242 ORTHO05D003593 4.6e-07 60.1 246 23.6
Aqoxy1G01746 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 6.0e-07 59.7 130 31.5
MD05G1360100 Malus domestica HOM05D000576 ORTHO05D000368 7.8e-07 59.3 249 25.3
Migut.G00965 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.0e-06 58.9 230 25.7
Lsat_1_v5_gn_8_12640 Lactuca sativa HOM05D000576 ORTHO05D000368 1.0e-06 58.9 321 23.4
RcHm_v2.0_Chr3g0467581 Rosa chinensis HOM05D003242 ORTHO05D003593 1.0e-06 58.9 250 24.8
Sc11g0002850 Simmondsia chinensis HOM05D000312 ORTHO05D000221 1.0e-06 58.9 196 28.1
TPR.G4771 Trifolium pratense HOM05D009500 ORTHO05D000368 1.0e-06 58.9 250 24.8
Ciclev10008279m.g Citrus clementina HOM05D000576 ORTHO05D000368 1.3e-06 58.5 252 23.0
Migut.I01059 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.3e-06 58.5 272 23.2
Lj2A441T55 Lonicera japonica HOM05D000051 ORTHO05D000015 1.3e-06 58.5 228 25.0
Lj3A972T44 Lonicera japonica HOM05D003242 ORTHO05D003593 1.7e-06 58.2 246 23.6
Aqoxy4G01471 Aquilegia oxysepala HOM05D000312 ORTHO05D008290 2.3e-06 57.8 269 23.0
Gohir.D11G305509 Gossypium hirsutum HOM05D000576 ORTHO05D000368 2.3e-06 57.8 344 19.5
CAN.G1075.43 Capsicum annuum HOM05D001396 ORTHO05D000493 3.0e-06 57.4 185 28.1
Migut.J00211 Erythranthe guttata HOM05D000576 ORTHO05D000368 3.0e-06 57.4 345 23.2
MBI02_g15268_MAGBIO Magnolia biondii HOM05D000051 ORTHO05D000015 3.0e-06 57.4 265 23.8
Rhsim08G0184100 Rhododendron simsii HOM05D000576 ORTHO05D000368 3.0e-06 57.4 243 23.5
TAR371G0043 Trochodendron aralioides HOM05D000312 ORTHO05D000221 3.0e-06 57.4 202 27.7
TAR633G2125 Trochodendron aralioides HOM05D000576 ORTHO05D000368 3.0e-06 57.4 270 22.6
Aqoxy3G03030 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 3.9e-06 57.0 134 29.1
Migut.J00214 Erythranthe guttata HOM05D000576 ORTHO05D000368 3.9e-06 57.0 345 22.6
Gohir.A01G077400 Gossypium hirsutum HOM05D000051 ORTHO05D000015 3.9e-06 57.0 272 24.6
Gohir.A02G008900 Gossypium hirsutum HOM05D000051 ORTHO05D000015 3.9e-06 57.0 261 23.4
TPR.G7001 Trifolium pratense HOM05D009500 ORTHO05D000368 5.0e-06 56.6 272 24.6
MSTRG.22205 Avicennia marina HOM05D000312 ORTHO05D000221 6.6e-06 56.2 211 25.6
Migut.M01792 Erythranthe guttata HOM05D000051 ORTHO05D000015 6.6e-06 56.2 255 23.9
FvH4_1g15870 Fragaria vesca HOM05D000555 ORTHO05D000646 8.6e-06 55.8 248 22.6
Gohir.A11G287782 Gossypium hirsutum HOM05D000576 ORTHO05D000368 8.6e-06 55.8 259 22.0
Gohir.D02G009200 Gossypium hirsutum HOM05D000051 ORTHO05D000015 8.6e-06 55.8 348 24.4


User provided reference genes

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