Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 7.3e-158 560.5 272 100.0
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.4e-92 342.8 258 64.0
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 7.7e-91 337.8 261 65.1
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 7.5e-86 321.2 261 63.2
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.7e-53 213.8 263 46.8
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 6.4e-53 211.8 263 46.4
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.7e-51 206.5 262 45.0
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 7.8e-51 204.9 263 44.9
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 3.9e-50 202.6 258 43.8
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 3.9e-50 202.6 263 44.9
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.5e-49 200.7 262 44.7
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.2e-48 197.6 252 42.5
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.6e-48 197.2 257 40.5
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 4.7e-48 195.7 257 45.1
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 3.1e-47 193.0 253 41.1
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.5e-46 190.7 253 44.3
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 2.4e-44 183.3 262 41.2
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 4.1e-44 182.6 255 44.7
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.3e-42 177.6 246 41.1
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.3e-42 176.8 262 40.8
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.3e-42 176.8 262 40.8
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.9e-42 176.0 262 40.1
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 6.6e-42 175.3 244 38.5
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 1.9e-41 173.7 249 39.8
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 4.3e-41 172.6 256 37.9
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 7.3e-41 171.8 261 38.3
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.2e-40 171.0 250 38.8
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 4.7e-40 169.1 250 39.6
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 6.2e-40 168.7 248 40.7
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 8.1e-40 168.3 250 40.4
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.1e-39 167.9 250 38.4
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.4e-39 167.5 219 45.2
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 6.8e-39 165.2 248 37.9
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 6.8e-39 165.2 246 38.2
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 3.4e-38 162.9 253 36.8
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 7.6e-38 161.8 254 37.8
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.3e-37 161.0 264 36.7
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 2.2e-37 160.2 272 35.7
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.9e-37 159.8 261 37.2
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 1.9e-36 157.1 242 38.4
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 9.2e-36 154.8 244 37.3
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 9.2e-36 154.8 220 41.8
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 7.8e-35 151.8 248 38.7
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 7.8e-35 151.8 253 36.8
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.3e-34 151.0 253 36.0
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 3.9e-34 149.4 256 35.2
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.1e-34 149.1 253 36.0
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.1e-33 147.9 261 34.9
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.9e-33 147.1 253 35.6
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.6e-32 144.1 257 33.5
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 2.8e-32 143.3 266 33.5
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 6.2e-32 142.1 258 34.9
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 6.2e-32 142.1 269 34.2
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.1e-31 141.4 275 35.6
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.4e-31 141.0 264 34.1
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.8e-31 140.6 251 36.3
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.1e-31 139.8 277 33.2
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 3.1e-31 139.8 261 37.9
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 8.9e-31 138.3 275 32.4
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 8.9e-31 138.3 275 32.4
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 7.6e-30 135.2 264 35.6
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 2.2e-29 133.7 271 32.5
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 4.9e-29 132.5 257 31.5
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 5.4e-28 129.0 265 36.2
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 7.1e-28 128.6 247 35.6
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 9.3e-28 128.3 266 36.1
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 9.3e-28 128.3 190 40.5
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.2e-27 127.9 264 32.6
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 2.1e-27 127.1 258 32.9
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 6.0e-27 125.6 227 34.8
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.7e-26 124.0 246 33.3
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 3.9e-26 122.9 255 35.3
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 5.1e-26 122.5 250 32.0
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 6.6e-26 122.1 256 34.4
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 8.7e-26 121.7 252 33.3
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.1e-25 121.3 256 32.8
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.1e-25 121.3 256 32.8
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 7.3e-25 118.6 251 32.3
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.3e-24 117.9 255 31.4
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 2.1e-24 117.1 250 32.4
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 2.1e-24 117.1 256 33.2
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 8.1e-24 115.2 256 30.5
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.1e-23 114.8 245 31.4
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 1.1e-23 114.8 251 31.9
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.4e-23 114.4 259 32.0
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 1.8e-23 114.0 252 31.7
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.8e-23 114.0 210 34.8
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.8e-23 114.0 256 33.2
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.4e-23 113.6 255 30.6
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 3.1e-23 113.2 249 31.7
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.1e-23 113.2 258 31.4
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.0e-23 112.8 245 31.4
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 4.0e-23 112.8 255 30.2
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 5.3e-23 112.5 250 32.8
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 5.3e-23 112.5 256 32.4
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 9.0e-23 111.7 256 31.6
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 9.0e-23 111.7 253 31.6
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.2e-22 111.3 253 32.4
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 2.0e-22 110.5 247 30.8
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.6e-22 110.2 257 32.7
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.6e-22 110.2 245 30.6
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 2.6e-22 110.2 258 30.6
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 5.8e-22 109.0 256 32.0
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 5.8e-22 109.0 256 28.1
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 7.6e-22 108.6 251 29.9
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 7.6e-22 108.6 249 31.3
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 7.6e-22 108.6 249 31.3
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 9.9e-22 108.2 249 31.3
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 1.3e-21 107.8 254 31.1
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.3e-21 107.8 263 32.3
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 1.7e-21 107.5 223 30.9
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 2.2e-21 107.1 261 29.9
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 2.2e-21 107.1 249 30.9
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 6.4e-21 105.5 254 32.3
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.1e-20 104.8 256 30.1
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 1.1e-20 104.8 259 32.0
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.1e-20 104.8 260 30.0
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.1e-20 104.8 254 31.9
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.9e-20 104.0 249 30.5
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 4.2e-20 102.8 252 30.2
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 5.4e-20 102.4 258 31.8
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.2e-19 101.3 253 30.4
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 2.7e-19 100.1 258 32.6
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 2.7e-19 100.1 257 32.3
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 3.5e-19 99.8 254 30.3
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 4.6e-19 99.4 286 26.9
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 6.0e-19 99.0 244 30.7
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 6.0e-19 99.0 262 31.3
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.0e-18 98.2 255 28.6
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 1.3e-18 97.8 259 31.3
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.8e-18 97.4 259 26.6
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 2.3e-18 97.1 223 31.4
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 3.0e-18 96.7 250 30.0
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 1.9e-17 94.0 246 28.5
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 5.6e-17 92.4 252 30.2
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 9.6e-17 91.7 247 26.3
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.6e-16 90.9 247 28.7
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 2.1e-16 90.5 253 28.5
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 2.1e-16 90.5 250 28.4
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.1e-15 88.2 253 27.7
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.4e-15 87.8 249 30.1
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 9.0e-15 85.1 259 29.3
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 5.8e-14 82.4 258 30.2
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 9.9e-14 81.6 252 26.2
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.7e-13 80.9 248 30.2
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.2e-13 80.5 261 29.5
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.8e-13 79.7 257 28.8
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 4.2e-12 76.3 245 25.7
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 9.3e-12 75.1 126 35.7
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 3.9e-10 69.7 194 30.9
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 7.4e-09 65.5 194 30.4
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 4.5e-06 56.2 101 34.7


User provided reference genes

Program Settings