Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 2.0e-52 208.8 102 100.0
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 4.7e-25 117.9 70 87.1
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 1.6e-17 92.8 46 95.7
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 1.8e-13 79.3 47 76.6
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 1.8e-13 79.3 47 76.6
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 4.1e-13 78.2 47 76.6
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 5.4e-13 77.8 46 80.4
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 9.2e-13 77.0 47 72.3
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.2e-12 76.6 46 78.3
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 1.2e-12 76.6 46 78.3
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.2e-12 76.6 46 78.3
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 1.2e-12 76.6 46 78.3
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 1.2e-12 76.6 46 78.3
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 1.2e-12 76.6 46 78.3
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 1.2e-12 76.6 46 78.3
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 1.2e-12 76.6 46 78.3
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 1.6e-12 76.3 47 72.3
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 1.6e-12 76.3 46 78.3
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 2.0e-12 75.9 53 69.8
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 2.0e-12 75.9 46 76.1
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 2.0e-12 75.9 47 70.2
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 2.7e-12 75.5 46 76.1
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 2.7e-12 75.5 46 76.1
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 2.7e-12 75.5 46 78.3
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 2.7e-12 75.5 46 73.9
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 3.5e-12 75.1 44 79.5
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 3.5e-12 75.1 52 71.2
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 4.6e-12 74.7 46 78.3
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 6.0e-12 74.3 46 73.9
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 6.0e-12 74.3 46 76.1
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 7.8e-12 73.9 46 76.1
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 7.8e-12 73.9 47 70.2
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 7.8e-12 73.9 47 70.2
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 7.8e-12 73.9 46 73.9
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 7.8e-12 73.9 46 71.7
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 7.8e-12 73.9 46 73.9
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 7.8e-12 73.9 46 73.9
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 7.8e-12 73.9 46 76.1
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 7.8e-12 73.9 46 73.9
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 7.8e-12 73.9 46 73.9
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.0e-11 73.6 47 70.2
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 1.0e-11 73.6 47 70.2
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 1.0e-11 73.6 46 76.1
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 1.0e-11 73.6 52 69.2
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 1.3e-11 73.2 46 76.1
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.3e-11 73.2 46 73.9
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 1.3e-11 73.2 46 76.1
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 1.7e-11 72.8 47 70.2
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 1.7e-11 72.8 47 68.1
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 1.7e-11 72.8 46 73.9
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 1.7e-11 72.8 46 73.9
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.7e-11 72.8 46 73.9
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.7e-11 72.8 46 73.9
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 2.3e-11 72.4 46 71.7
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 2.3e-11 72.4 46 69.6
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 2.3e-11 72.4 44 75.0
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 2.3e-11 72.4 46 73.9
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 2.3e-11 72.4 44 77.3
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 2.3e-11 72.4 46 73.9
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 3.0e-11 72.0 47 72.3
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 3.0e-11 72.0 46 73.9
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 3.9e-11 71.6 45 75.6
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 3.9e-11 71.6 45 75.6
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 3.9e-11 71.6 47 66.0
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 5.0e-11 71.2 46 73.9
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 5.0e-11 71.2 46 71.7
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 5.0e-11 71.2 46 71.7
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 6.6e-11 70.9 47 70.2
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 6.6e-11 70.9 47 70.2
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 6.6e-11 70.9 46 73.9
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 6.6e-11 70.9 46 71.7
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 6.6e-11 70.9 46 71.7
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 6.6e-11 70.9 47 70.2
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 6.6e-11 70.9 44 72.7
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 8.6e-11 70.5 44 75.0
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 8.6e-11 70.5 46 73.9
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 8.6e-11 70.5 46 73.9
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 1.1e-10 70.1 44 72.7
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 1.1e-10 70.1 46 65.2
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.5e-10 69.7 44 75.0
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.5e-10 69.7 44 75.0
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 3.3e-10 68.6 44 72.7
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 3.3e-10 68.6 47 68.1
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 4.3e-10 68.2 46 69.6
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 4.3e-10 68.2 46 69.6
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 5.6e-10 67.8 47 68.1
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 5.6e-10 67.8 47 68.1
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 5.6e-10 67.8 47 68.1
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 5.6e-10 67.8 47 68.1
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 5.6e-10 67.8 47 68.1
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 7.3e-10 67.4 44 65.9
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.2e-09 66.6 44 70.5
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.2e-09 66.6 44 70.5
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 1.2e-09 66.6 46 69.6
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 1.2e-09 66.6 44 65.9
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 1.2e-09 66.6 43 72.1
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 1.6e-09 66.2 46 63.0
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 2.1e-09 65.9 46 67.4
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 2.8e-09 65.5 46 69.6
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 2.8e-09 65.5 46 71.7
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 4.7e-09 64.7 46 65.2
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.1e-08 63.5 44 65.9
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 2.3e-08 62.4 46 56.5
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 8.9e-08 60.5 44 61.4
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.5e-07 59.7 44 61.4
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.5e-07 59.7 44 61.4
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.5e-07 59.7 44 61.4
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.7e-06 56.2 44 59.1
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.7e-06 56.2 51 51.0
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.7e-06 56.2 43 58.1


User provided reference genes

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