Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 2.5e-62 241.9 120 100.0
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 6.3e-29 131.0 157 52.9
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 5.0e-26 121.3 181 43.1
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 1.2e-24 116.7 145 49.0
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 6.7e-23 110.9 187 39.6
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 1.9e-17 92.8 180 36.7
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 2.1e-16 89.4 200 35.5
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 3.0e-15 85.5 205 34.6
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.0e-15 85.1 160 32.5
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 5.2e-15 84.7 179 35.8
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.5e-14 83.2 184 33.7
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.6e-14 82.4 165 37.6
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 5.7e-14 81.3 177 34.5
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 5.7e-14 81.3 177 34.5
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 5.7e-14 81.3 186 33.9
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 7.5e-14 80.9 102 46.1
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 7.5e-14 80.9 120 45.8
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.3e-13 80.1 111 48.6
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.7e-13 79.7 114 46.5
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 1.7e-13 79.7 114 46.5
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.7e-13 79.7 150 37.3
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 2.2e-13 79.3 102 44.1
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 2.2e-13 79.3 184 34.2
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 2.8e-13 79.0 127 39.4
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.8e-13 79.0 114 44.7
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 6.3e-13 77.8 107 43.0
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 6.3e-13 77.8 107 43.0
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 6.3e-13 77.8 124 39.5
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 6.3e-13 77.8 102 43.1
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 6.3e-13 77.8 124 39.5
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 6.3e-13 77.8 102 43.1
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 6.3e-13 77.8 109 45.0
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 6.3e-13 77.8 109 45.0
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 6.3e-13 77.8 189 30.7
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 8.3e-13 77.4 119 42.0
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 8.3e-13 77.4 119 42.0
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 8.3e-13 77.4 97 48.5
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 8.3e-13 77.4 189 30.2
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.1e-12 77.0 102 43.1
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 1.1e-12 77.0 121 38.8
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.1e-12 77.0 102 43.1
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.1e-12 77.0 102 43.1
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.1e-12 77.0 125 40.8
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 1.4e-12 76.6 106 41.5
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.4e-12 76.6 102 44.1
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.4e-12 76.6 118 46.6
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 1.8e-12 76.3 135 37.0
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.8e-12 76.3 123 39.8
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 2.4e-12 75.9 108 41.7
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 2.4e-12 75.9 121 38.8
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 2.4e-12 75.9 109 45.0
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 3.1e-12 75.5 110 48.2
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 4.1e-12 75.1 103 44.7
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 4.1e-12 75.1 103 44.7
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 4.1e-12 75.1 91 44.0
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 4.1e-12 75.1 108 42.6
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 5.4e-12 74.7 127 37.8
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.4e-12 74.7 92 46.7
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 7.0e-12 74.3 94 44.7
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 9.1e-12 73.9 103 44.7
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 9.1e-12 73.9 113 41.6
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 9.1e-12 73.9 105 41.0
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 9.1e-12 73.9 92 48.9
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 1.2e-11 73.6 111 43.2
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.2e-11 73.6 102 43.1
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 1.2e-11 73.6 118 42.4
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.6e-11 73.2 112 41.1
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.6e-11 73.2 120 40.0
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 1.6e-11 73.2 102 43.1
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 1.6e-11 73.2 124 40.3
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.0e-11 72.8 127 37.0
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 2.0e-11 72.8 117 42.7
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.0e-11 72.8 75 52.0
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 2.7e-11 72.4 104 43.3
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.7e-11 72.4 104 44.2
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.7e-11 72.4 119 39.5
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 2.7e-11 72.4 118 39.8
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.5e-11 72.0 106 44.3
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 4.5e-11 71.6 135 37.0
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.5e-11 71.6 105 42.9
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 4.5e-11 71.6 120 40.8
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 4.5e-11 71.6 53 66.0
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 5.9e-11 71.2 104 44.2
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 5.9e-11 71.2 126 38.1
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 5.9e-11 71.2 127 37.8
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 5.9e-11 71.2 124 40.3
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 5.9e-11 71.2 118 43.2
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 7.7e-11 70.9 57 61.4
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 7.7e-11 70.9 208 30.3
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.0e-10 70.5 98 39.8
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 1.0e-10 70.5 48 72.9
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.0e-10 70.5 129 40.3
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.7e-10 69.7 128 35.9
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 2.3e-10 69.3 119 37.8
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 2.3e-10 69.3 129 38.0
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 2.3e-10 69.3 50 68.0
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 2.3e-10 69.3 123 38.2
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 2.9e-10 68.9 124 37.1
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 2.9e-10 68.9 56 64.3
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.8e-10 68.6 191 30.4
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 3.8e-10 68.6 52 67.3
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 5.0e-10 68.2 48 68.8
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 5.0e-10 68.2 48 68.8
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 5.0e-10 68.2 120 40.0
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 6.6e-10 67.8 51 64.7
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 6.6e-10 67.8 125 39.2
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.6e-10 67.8 124 41.1
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 8.6e-10 67.4 98 38.8
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 8.6e-10 67.4 124 41.1
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 8.6e-10 67.4 124 41.1
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 8.6e-10 67.4 52 65.4
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.1e-09 67.0 195 30.8
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.1e-09 67.0 113 40.7
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 1.1e-09 67.0 105 39.0
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 1.1e-09 67.0 182 29.7
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 1.1e-09 67.0 59 57.6
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 1.5e-09 66.6 51 62.7
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 1.5e-09 66.6 135 34.1
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.9e-09 66.2 124 35.5
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 2.5e-09 65.9 104 43.3
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 2.5e-09 65.9 108 37.0
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.5e-09 65.9 191 29.8
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 2.5e-09 65.9 98 42.9
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.5e-09 65.9 128 36.7
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 2.5e-09 65.9 52 63.5
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.5e-09 65.9 91 46.2
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.3e-09 65.5 116 37.1
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 3.3e-09 65.5 117 38.5
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 4.2e-09 65.1 127 35.4
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 4.2e-09 65.1 51 58.8
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 4.2e-09 65.1 111 37.8
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 4.2e-09 65.1 119 38.7
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 5.5e-09 64.7 114 36.8
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 7.2e-09 64.3 58 56.9
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 7.2e-09 64.3 127 38.6
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 9.5e-09 63.9 108 43.5
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 9.5e-09 63.9 191 30.9
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 1.2e-08 63.5 92 45.7
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 1.2e-08 63.5 50 64.0
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 1.6e-08 63.2 111 37.8
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 1.6e-08 63.2 114 36.8
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.6e-08 63.2 48 64.6
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 2.1e-08 62.8 131 34.4
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 2.1e-08 62.8 96 42.7
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 2.8e-08 62.4 113 37.2
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 2.8e-08 62.4 58 56.9
SEGI_03234 Sequoiadendron giganteum HOM05D001536 ORTHO05D001442 2.8e-08 62.4 60 55.0
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 4.7e-08 61.6 51 58.8
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 4.7e-08 61.6 103 39.8
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 6.1e-08 61.2 128 34.4
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 1.0e-07 60.5 49 63.3
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 1.0e-07 60.5 96 45.8
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.0e-07 60.5 99 41.4
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.4e-07 60.1 48 62.5
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 1.8e-07 59.7 49 59.2
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 2.3e-07 59.3 47 57.4
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 3.0e-07 58.9 96 44.8
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 3.0e-07 58.9 91 39.6
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 6.8e-07 57.8 46 65.2
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 8.9e-07 57.4 59 50.8
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 8.9e-07 57.4 61 49.2
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 8.9e-07 57.4 61 49.2
arahy.Tifrunner.gnm1.ann1.B15RMV Arachis hypogaea HOM05D001536 ORTHO05D001442 1.2e-06 57.0 38 68.4
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.2e-06 57.0 101 35.6
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.2e-06 57.0 88 42.0
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 2.0e-06 56.2 158 28.5
arahy.Tifrunner.gnm1.ann1.PQMP7V Arachis hypogaea HOM05D001536 ORTHO05D001442 3.4e-06 55.5 38 65.8
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 3.4e-06 55.5 96 41.7
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 9.8e-06 53.9 41 65.9


User provided reference genes

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