Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 8.0e-200 700.3 368 100.0
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 2.7e-131 472.6 375 66.9
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 3.8e-125 452.2 375 65.1
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 1.5e-113 413.7 373 62.2
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 6.7e-98 361.7 368 54.3
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 9.1e-95 351.3 342 55.8
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 5.9e-86 322.0 371 48.5
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.9e-85 319.7 360 51.1
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 3.8e-85 319.3 375 50.1
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 6.5e-85 318.5 360 50.8
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 8.5e-85 318.2 379 49.6
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 5.5e-84 315.5 380 47.6
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 1.6e-83 313.9 379 49.3
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 2.1e-83 313.5 373 49.1
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 2.7e-83 313.2 352 48.6
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 6.1e-83 312.0 386 49.5
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.0e-82 311.2 375 49.6
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 6.8e-82 308.5 377 50.1
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.0e-81 307.0 383 46.7
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 3.4e-81 306.2 325 53.2
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 4.4e-81 305.8 377 48.5
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 2.2e-80 303.5 373 48.3
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.8e-80 303.1 379 47.5
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 4.8e-80 302.4 377 46.9
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.8e-79 300.4 383 46.2
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 2.4e-79 300.1 381 48.3
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 3.1e-79 299.7 379 47.2
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 5.4e-79 298.9 375 47.2
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 5.4e-79 298.9 377 47.2
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 5.4e-79 298.9 377 47.2
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 5.4e-79 298.9 361 49.6
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 1.6e-78 297.4 352 48.9
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.5e-78 296.2 370 47.6
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 1.3e-77 294.3 341 50.7
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 6.6e-77 292.0 381 46.5
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.5e-76 290.8 382 44.2
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.5e-76 290.8 364 45.6
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 3.3e-76 289.7 371 48.0
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 3.3e-76 289.7 360 48.6
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 4.2e-76 289.3 369 46.9
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 5.5e-76 288.9 373 45.3
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.6e-75 287.3 370 43.8
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 1.6e-75 287.3 379 46.7
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 8.0e-75 285.0 381 46.7
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 8.0e-75 285.0 367 46.0
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 1.0e-74 284.6 380 45.5
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 2.3e-74 283.5 371 46.6
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 5.2e-74 282.3 368 45.4
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 3.4e-73 279.6 372 44.9
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.2e-72 276.9 331 46.8
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.8e-72 276.6 351 45.6
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 6.3e-72 275.4 365 44.4
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 6.3e-72 275.4 420 42.6
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 1.1e-71 274.6 379 45.4
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 2.4e-71 273.5 369 43.6
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 2.4e-71 273.5 366 44.8
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 2.4e-71 273.5 347 46.1
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 3.1e-71 273.1 377 45.6
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 4.1e-71 272.7 369 43.6
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.1e-71 272.7 351 45.0
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 9.2e-71 271.6 374 46.5
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.2e-70 271.2 326 50.9
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.2e-70 271.2 350 45.7
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 1.6e-70 270.8 366 44.0
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.6e-70 270.8 375 45.9
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.6e-70 270.8 352 44.9
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 2.7e-70 270.0 353 45.6
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 5.9e-70 268.9 367 46.0
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 7.8e-70 268.5 368 45.4
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.3e-69 267.7 347 45.0
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.3e-69 267.7 347 45.0
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.7e-69 267.3 347 45.5
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.7e-69 267.3 365 43.3
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.7e-69 267.3 365 43.3
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 2.9e-69 266.5 370 44.6
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 3.8e-69 266.2 365 43.8
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 3.8e-69 266.2 347 46.1
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 5.0e-69 265.8 360 44.7
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 6.6e-69 265.4 351 45.6
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 8.6e-69 265.0 345 44.9
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.9e-68 263.8 329 47.7
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 1.9e-68 263.8 377 44.6
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.9e-68 263.8 372 41.9
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 2.5e-68 263.5 347 46.1
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 3.3e-68 263.1 347 46.1
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 3.3e-68 263.1 306 48.4
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.3e-68 262.7 370 41.9
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.6e-68 262.3 368 44.6
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 5.6e-68 262.3 374 43.6
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 9.5e-68 261.5 371 44.5
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 1.6e-67 260.8 348 42.5
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 1.6e-67 260.8 365 45.2
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 2.1e-67 260.4 347 45.8
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 2.1e-67 260.4 364 44.2
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 2.8e-67 260.0 308 46.8
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 6.1e-67 258.8 324 46.9
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 8.0e-67 258.5 364 43.7
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 8.0e-67 258.5 368 43.5
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.0e-66 258.1 370 43.2
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.4e-66 257.7 370 42.7
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.4e-66 257.7 370 42.7
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.4e-66 257.7 369 42.8
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.8e-66 257.3 347 44.4
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.8e-66 257.3 348 45.4
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.8e-66 257.3 370 41.6
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 2.3e-66 256.9 347 44.4
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 2.3e-66 256.9 347 44.4
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 2.3e-66 256.9 373 41.8
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 3.1e-66 256.5 373 42.9
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.5e-65 254.2 370 41.1
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.8e-65 251.5 369 41.7
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.9e-63 247.3 369 41.7
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 7.0e-63 245.4 340 43.5
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 2.0e-62 243.8 381 40.7
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 2.7e-62 243.4 391 40.7
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 1.7e-61 240.7 336 44.6
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 3.0e-61 240.0 345 41.4
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 3.9e-61 239.6 353 40.8
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 2.5e-60 236.9 382 39.3
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 9.5e-60 235.0 361 41.6
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.6e-59 234.2 328 46.3
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 1.2e-57 228.0 371 41.2
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.2e-56 223.8 354 39.0
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 2.1e-54 217.2 329 39.2
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 2.8e-51 206.8 382 34.0
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 5.2e-50 202.6 285 44.2
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 1.1e-47 194.9 281 40.6
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 1.2e-46 191.4 330 38.8
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.4e-42 177.2 287 37.3
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.3e-37 161.4 200 44.0
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 5.4e-31 139.4 130 60.0
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 1.5e-28 131.3 380 30.3
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.7e-24 117.9 365 29.3
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 8.4e-24 115.5 388 29.6
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.4e-23 114.0 373 29.2
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 7.1e-23 112.5 130 50.8
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 1.5e-20 104.8 376 27.9
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.6e-19 101.3 157 38.2
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.1e-19 99.0 125 36.0
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.4e-18 98.2 198 34.3
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 5.3e-18 96.3 229 31.4
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.2e-17 95.1 127 33.9
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.0e-17 94.4 100 44.0
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 5.8e-17 92.8 241 30.3
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 1.3e-16 91.7 103 43.7
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.1e-15 88.6 128 35.2
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.5e-15 87.4 100 41.0
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 2.5e-07 60.8 103 37.9
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.5e-07 60.8 84 38.1
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.5e-07 60.8 84 38.1
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 1.2e-06 58.5 62 51.6
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 2.1e-06 57.8 125 36.0


User provided reference genes

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