Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 9.0e-160 567.0 314 100.0
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 2.0e-111 406.4 314 71.3
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 1.1e-109 400.6 313 67.7
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 1.7e-105 386.7 351 61.3
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 2.9e-97 359.4 261 70.1
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.1e-96 357.5 292 65.1
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 2.4e-96 356.3 254 70.5
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 9.2e-96 354.4 262 68.7
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 5.9e-95 351.7 261 69.3
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 1.3e-94 350.5 252 70.6
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.7e-94 350.1 263 68.1
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 3.0e-94 349.4 258 69.0
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 3.9e-94 349.0 263 67.7
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.1e-93 347.4 262 67.6
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.9e-93 346.7 258 67.8
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 2.5e-93 346.3 258 68.6
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 2.5e-93 346.3 252 69.0
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 3.3e-93 345.9 262 67.9
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 7.3e-93 344.7 264 68.6
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 4.7e-92 342.0 262 66.0
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 6.2e-92 341.7 261 65.1
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 8.0e-92 341.3 262 66.8
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 8.0e-92 341.3 257 67.3
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 1.8e-91 340.1 256 67.6
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 3.1e-91 339.3 259 65.6
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 3.1e-91 339.3 259 65.6
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 4.0e-91 339.0 259 66.8
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 5.2e-91 338.6 261 65.9
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 8.9e-91 337.8 261 65.5
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.5e-90 337.0 258 67.1
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 2.6e-90 336.3 262 66.0
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 9.8e-90 334.3 252 67.1
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 2.2e-89 333.2 263 65.8
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 2.2e-89 333.2 263 65.8
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 3.7e-89 332.4 263 65.8
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 4.9e-89 332.0 264 66.3
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.9e-88 330.1 259 65.3
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 3.2e-88 329.3 263 63.5
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 4.1e-88 328.9 259 63.7
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 5.4e-88 328.6 244 68.4
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 9.2e-88 327.8 262 66.4
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 1.2e-87 327.4 264 65.9
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 2.7e-87 326.2 263 62.7
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 1.7e-86 323.6 247 68.4
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 2.3e-86 323.2 259 63.3
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 5.0e-86 322.0 257 63.8
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 5.0e-86 322.0 292 58.6
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 8.6e-86 321.2 258 64.7
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 1.9e-85 320.1 261 65.1
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 2.5e-85 319.7 262 61.5
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 3.3e-85 319.3 262 63.7
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 4.3e-85 318.9 254 64.6
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.2e-84 317.4 244 66.0
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 3.6e-84 315.8 257 63.4
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 6.2e-84 315.1 258 63.2
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 8.1e-84 314.7 253 62.1
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 8.1e-84 314.7 244 65.2
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 1.8e-83 313.5 245 65.7
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 2.6e-82 309.7 236 66.5
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 7.5e-82 308.1 264 61.4
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 9.8e-82 307.8 261 63.6
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 1.7e-81 307.0 261 62.5
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 2.2e-81 306.6 259 62.5
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 2.2e-81 306.6 259 62.2
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 3.7e-81 305.8 258 62.0
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 1.1e-80 304.3 261 61.7
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 1.9e-80 303.5 249 63.5
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 5.4e-80 302.0 241 66.4
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 2.7e-79 299.7 264 60.2
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 3.5e-79 299.3 260 60.8
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 6.0e-79 298.5 259 59.1
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 7.8e-79 298.1 244 63.1
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 7.8e-79 298.1 262 59.9
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 5.1e-78 295.4 233 67.4
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 5.1e-78 295.4 269 56.9
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 6.6e-78 295.0 259 58.7
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 1.5e-77 293.9 253 60.5
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 1.5e-77 293.9 253 60.5
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 1.9e-77 293.5 251 60.6
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 1.9e-77 293.5 262 58.4
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 3.3e-77 292.7 240 62.5
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 5.6e-77 292.0 261 58.6
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 2.1e-76 290.0 261 58.2
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 2.1e-76 290.0 246 63.0
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 2.8e-76 289.7 261 58.6
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 4.7e-76 288.9 263 57.8
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 1.8e-75 287.0 234 63.7
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 2.3e-75 286.6 257 57.6
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 5.8e-74 282.0 254 57.5
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.3e-73 280.8 329 49.2
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 1.1e-72 277.7 264 58.3
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 2.4e-72 276.6 262 56.1
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 2.7e-71 273.1 193 69.9
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 4.3e-69 265.8 382 42.4
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 2.1e-68 263.5 230 58.3
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 1.1e-64 251.1 195 64.6
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 2.1e-63 246.9 254 50.4
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 2.7e-63 246.5 279 51.3
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 5.1e-62 242.3 253 49.8
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 6.6e-62 241.9 237 54.4
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 5.6e-61 238.8 204 57.4
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 5.6e-61 238.8 251 51.8
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 7.3e-61 238.4 263 51.3
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 5.3e-59 232.3 205 62.4
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 2.6e-58 229.9 198 62.1
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 3.2e-56 223.0 265 49.8
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 2.1e-55 220.3 219 52.1
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 3.0e-54 216.5 253 48.2
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 8.7e-54 214.9 142 71.8
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 1.5e-53 214.2 241 49.4
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 1.3e-52 211.1 289 44.6
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 9.0e-51 204.9 126 84.9
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 3.4e-50 203.0 157 69.4
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 3.9e-46 189.5 172 60.5
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 1.9e-45 187.2 252 43.7
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 3.1e-43 179.9 251 43.8
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.3e-41 174.5 177 53.1
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 3.8e-41 172.9 172 57.6
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 5.5e-40 169.1 254 39.8
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 3.5e-39 166.4 235 41.3
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 3.1e-35 153.3 90 88.9
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 5.5e-32 142.5 164 47.0
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 2.8e-20 103.6 83 56.6
PGSC0003DMG400030254 Solanum tuberosum HOM05D000561 ORTHO05D008162 2.3e-06 57.4 36 75.0


User provided reference genes

Program Settings