Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 6.0e-58 227.3 112 100.0
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 2.6e-45 185.3 110 81.8
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 3.0e-41 171.8 112 74.1
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 1.3e-39 166.4 110 73.6
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 2.8e-39 165.2 112 69.6
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 6.5e-36 154.1 101 76.2
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 6.5e-36 154.1 112 68.8
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 6.5e-36 154.1 112 68.8
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.9e-35 152.5 112 67.9
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.9e-35 152.5 112 67.9
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 1.8e-30 136.0 117 62.4
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 5.3e-30 134.4 111 64.9
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 2.0e-29 132.5 115 60.9
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 1.7e-28 129.4 105 63.8
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 1.7e-28 129.4 105 62.9
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 5.0e-28 127.9 105 62.9
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 5.0e-28 127.9 102 67.6
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 8.5e-28 127.1 117 62.4
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 1.1e-27 126.7 99 62.6
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 1.1e-27 126.7 103 62.1
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 1.1e-27 126.7 117 57.3
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 1.4e-27 126.3 105 59.0
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 1.4e-27 126.3 103 59.2
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 1.4e-27 126.3 105 63.8
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.9e-27 125.9 104 60.6
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 2.5e-27 125.6 97 68.0
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 3.2e-27 125.2 100 62.0
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 3.2e-27 125.2 103 60.2
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 3.2e-27 125.2 118 58.5
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 3.2e-27 125.2 105 59.0
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 3.2e-27 125.2 117 56.4
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 3.2e-27 125.2 100 61.0
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 4.2e-27 124.8 117 59.0
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 5.5e-27 124.4 112 58.9
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 5.5e-27 124.4 104 61.5
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 7.2e-27 124.0 103 61.2
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 7.2e-27 124.0 100 59.0
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 9.4e-27 123.6 99 62.6
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 1.2e-26 123.2 110 56.4
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 1.2e-26 123.2 101 61.4
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.6e-26 122.9 116 56.0
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 1.6e-26 122.9 100 58.0
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 2.7e-26 122.1 114 57.9
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 2.7e-26 122.1 104 59.6
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 3.6e-26 121.7 111 60.4
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 6.1e-26 120.9 111 58.6
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 1.0e-25 120.2 103 57.3
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 1.4e-25 119.8 106 56.6
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 1.4e-25 119.8 116 57.8
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.8e-25 119.4 106 56.6
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 1.8e-25 119.4 103 57.3
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 2.3e-25 119.0 96 61.5
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 2.3e-25 119.0 96 60.4
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 2.3e-25 119.0 102 56.9
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 2.3e-25 119.0 102 59.8
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 2.3e-25 119.0 100 57.0
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 3.0e-25 118.6 104 56.7
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 3.0e-25 118.6 99 58.6
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 3.0e-25 118.6 99 58.6
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 3.0e-25 118.6 99 58.6
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 3.0e-25 118.6 96 59.4
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 3.0e-25 118.6 112 55.4
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 3.0e-25 118.6 103 60.2
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 3.9e-25 118.2 102 56.9
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 3.9e-25 118.2 100 57.0
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 3.9e-25 118.2 103 56.3
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 5.2e-25 117.9 102 55.9
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 5.2e-25 117.9 96 59.4
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 5.2e-25 117.9 100 58.0
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 5.2e-25 117.9 102 59.8
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 5.2e-25 117.9 100 59.0
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 5.2e-25 117.9 110 57.3
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 5.2e-25 117.9 103 61.2
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 6.7e-25 117.5 100 59.0
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 6.7e-25 117.5 100 57.0
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 6.7e-25 117.5 103 61.2
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 8.8e-25 117.1 102 55.9
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 8.8e-25 117.1 102 55.9
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 1.1e-24 116.7 102 56.9
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 1.5e-24 116.3 139 48.2
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 2.0e-24 115.9 104 55.8
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 2.6e-24 115.5 96 58.3
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 2.6e-24 115.5 96 58.3
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 2.6e-24 115.5 96 58.3
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 2.6e-24 115.5 103 55.3
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 2.6e-24 115.5 99 60.6
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 2.6e-24 115.5 99 60.6
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 3.3e-24 115.2 100 57.0
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 3.3e-24 115.2 100 60.0
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 4.4e-24 114.8 105 58.1
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 4.4e-24 114.8 100 59.0
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 5.7e-24 114.4 103 56.3
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 7.4e-24 114.0 102 54.9
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 7.4e-24 114.0 102 58.8
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 9.7e-24 113.6 102 56.9
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 9.7e-24 113.6 114 53.5
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 2.2e-23 112.5 99 59.6
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 2.8e-23 112.1 99 57.6
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 3.7e-23 111.7 99 59.6
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 4.8e-23 111.3 101 57.4
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 6.3e-23 110.9 105 54.3
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 8.2e-23 110.5 98 55.1
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 8.2e-23 110.5 112 50.0
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 1.1e-22 110.2 100 56.0
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 1.4e-22 109.8 102 55.9
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 1.8e-22 109.4 105 55.2
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 1.8e-22 109.4 105 55.2
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 3.1e-22 108.6 100 53.0
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 3.1e-22 108.6 102 53.9
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 5.3e-22 107.8 96 58.3
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 5.3e-22 107.8 100 55.0
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 7.0e-22 107.5 99 55.6
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 7.0e-22 107.5 76 63.2
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 9.1e-22 107.1 118 48.3
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 9.1e-22 107.1 101 57.4
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 2.6e-21 105.5 99 54.5
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 5.9e-21 104.4 99 54.5
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 5.0e-20 101.3 101 54.5
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 6.5e-20 100.9 101 54.5
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 7.2e-19 97.4 102 49.0
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 2.3e-17 92.4 59 72.9
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 6.7e-17 90.9 86 53.5
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 5.7e-16 87.8 56 75.0
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 3.1e-14 82.0 103 39.8
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 7.7e-13 77.4 102 40.2
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 8.5e-12 73.9 101 39.6
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 1.9e-11 72.8 100 38.0
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 3.0e-09 65.5 65 52.3
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 8.8e-09 63.9 68 48.5
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 1.3e-07 60.1 65 46.2
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 1.3e-07 60.1 95 38.9
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 2.2e-07 59.3 78 43.6
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 4.8e-07 58.2 66 43.9
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 1.4e-06 56.6 64 48.4


User provided reference genes

Program Settings