Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.8e-218 762.3 384 100.0
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 1.6e-171 606.3 465 70.8
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 7.1e-167 590.9 342 87.1
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.2e-166 590.1 378 81.0
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 2.1e-166 589.3 343 86.6
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 6.0e-166 587.8 370 80.5
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 7.9e-166 587.4 348 85.3
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 1.3e-165 586.6 343 86.6
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 1.1e-164 583.6 342 86.8
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 1.5e-164 583.2 342 86.5
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 1.5e-164 583.2 338 87.3
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 1.9e-164 582.8 364 82.4
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 1.9e-164 582.8 340 85.9
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.9e-164 582.8 339 86.4
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 5.6e-164 581.3 338 87.0
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 7.4e-164 580.9 364 81.6
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 2.1e-163 579.3 342 85.4
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 2.8e-163 578.9 338 86.1
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 4.8e-163 578.2 364 82.1
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 4.8e-163 578.2 364 82.1
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 4.8e-163 578.2 339 85.8
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 1.1e-162 577.0 344 83.7
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.1e-162 577.0 364 81.9
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 2.4e-162 575.9 343 85.1
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 3.1e-162 575.5 344 83.4
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 4.0e-162 575.1 341 83.0
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 4.0e-162 575.1 364 81.0
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 4.0e-162 575.1 338 85.8
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 4.0e-162 575.1 338 85.5
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 5.3e-162 574.7 342 84.5
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 6.9e-162 574.3 344 82.3
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 6.9e-162 574.3 352 82.7
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 9.0e-162 573.9 340 85.3
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.2e-161 573.5 342 83.9
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 1.2e-161 573.5 342 84.8
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 1.2e-161 573.5 360 81.4
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 2.0e-161 572.8 372 79.3
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 3.4e-161 572.0 342 84.8
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 5.8e-161 571.2 390 76.4
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 7.6e-161 570.9 338 85.5
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 7.6e-161 570.9 339 84.7
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 1.0e-160 570.5 344 83.1
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 1.3e-160 570.1 351 81.8
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 2.2e-160 569.3 338 84.0
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 3.8e-160 568.5 338 84.9
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 3.8e-160 568.5 349 82.5
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 6.5e-160 567.8 342 84.8
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 8.4e-160 567.4 387 76.2
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.1e-159 567.0 375 78.7
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 1.4e-159 566.6 366 77.9
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 1.4e-159 566.6 353 81.9
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 3.2e-159 565.5 338 84.3
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 3.2e-159 565.5 342 83.9
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 3.2e-159 565.5 353 81.6
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.1e-158 562.8 360 80.3
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 2.7e-158 562.4 338 83.7
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 4.6e-158 561.6 339 83.2
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.6e-158 561.6 339 83.2
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 1.8e-157 559.7 366 77.0
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 1.8e-157 559.7 338 83.7
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 2.3e-157 559.3 339 85.0
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.0e-157 558.9 339 82.6
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 3.9e-157 558.5 342 81.9
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.9e-157 558.5 339 82.6
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.9e-157 558.5 339 82.6
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 4.3e-156 555.1 339 82.3
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 4.3e-156 555.1 339 82.3
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 5.7e-156 554.7 375 75.7
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 1.3e-155 553.5 338 81.7
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 1.3e-155 553.5 338 81.7
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 1.6e-155 553.1 339 82.9
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 1.6e-155 553.1 376 75.8
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 1.6e-155 553.1 339 82.0
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 1.6e-155 553.1 339 82.0
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 1.6e-155 553.1 339 82.0
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 1.6e-155 553.1 339 82.0
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 1.6e-155 553.1 339 82.0
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 3.7e-155 552.0 375 74.7
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 4.8e-155 551.6 338 82.0
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 6.3e-155 551.2 342 81.3
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.8e-154 549.7 338 81.4
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 6.9e-154 547.7 345 81.2
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 1.2e-153 547.0 340 81.5
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 1.5e-153 546.6 344 80.8
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 4.5e-153 545.0 338 80.8
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 2.2e-152 542.7 339 81.1
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 5.0e-152 541.6 339 80.8
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 5.0e-152 541.6 339 80.8
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 5.0e-152 541.6 339 80.8
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.4e-151 540.0 339 80.2
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 1.6e-150 536.6 340 80.3
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.2e-147 526.2 437 64.5
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 6.5e-144 514.6 307 84.7
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 1.4e-143 513.5 355 73.5
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 2.5e-143 512.7 312 83.7
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.5e-143 512.7 310 83.5
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 2.5e-143 512.7 297 86.9
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 1.2e-142 510.4 331 80.1
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.8e-141 506.5 327 77.4
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 1.3e-139 500.4 425 65.6
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 5.9e-137 491.5 353 69.7
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 8.5e-136 487.6 364 71.4
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 9.4e-135 484.2 309 77.3
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 1.2e-134 483.8 341 71.3
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 1.6e-134 483.4 342 70.8
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 1.0e-133 480.7 376 65.4
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 1.8e-133 479.9 344 73.5
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 2.3e-133 479.6 282 85.8
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 8.0e-126 454.5 339 69.0
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 1.5e-124 450.3 346 65.3
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.7e-123 446.8 304 77.3
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.9e-119 433.3 346 67.9
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 1.8e-117 426.8 251 86.1
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 7.2e-111 404.8 245 86.1
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 1.4e-109 400.6 270 75.6
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 8.8e-109 397.9 247 81.4
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.3e-107 394.0 251 79.7
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 1.5e-103 380.6 252 78.2
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 6.4e-91 338.6 206 85.4
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 1.2e-76 291.2 181 81.2
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 7.3e-71 271.9 161 85.7
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 2.1e-70 270.4 330 45.2
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 4.7e-70 269.2 187 74.3
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 1.8e-69 267.3 335 45.4
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.8e-62 242.7 143 82.5
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 2.1e-54 217.2 357 42.9
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 4.8e-54 216.1 121 84.3
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 1.1e-53 214.9 353 33.4
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.2e-50 203.0 132 77.3
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.8e-46 190.3 107 86.0
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 2.4e-45 187.2 385 36.4
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.5e-31 141.4 129 59.7
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 6.3e-30 136.0 72 91.7
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 4.1e-29 133.3 80 81.2
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 6.9e-29 132.5 79 83.5
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.6e-28 130.6 92 72.8
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 6.5e-27 125.9 107 64.5
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 2.5e-26 124.0 76 78.9
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 2.5e-26 124.0 76 78.9
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 2.5e-26 124.0 76 78.9
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 3.2e-26 123.6 82 73.2
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 9.4e-26 122.1 64 92.2
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 1.2e-25 121.7 76 76.3
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 1.2e-25 121.7 76 76.3
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 4.6e-25 119.8 76 75.0
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 6.7e-24 115.9 125 48.0
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 3.4e-20 103.6 101 53.5
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 3.8e-19 100.1 64 78.1
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 1.3e-14 85.1 54 83.3
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 1.8e-13 81.3 83 53.0
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 3.1e-13 80.5 44 88.6
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 3.8e-11 73.6 67 58.2
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.6e-09 68.2 36 91.7
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 6.1e-09 66.2 35 88.6
arahy.Tifrunner.gnm1.ann1.SQ6FML Arachis hypogaea HOM05D000121 ORTHO05D031608 3.0e-08 63.9 213 29.6
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 3.0e-08 63.9 37 78.4
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 8.8e-08 62.4 42 64.3
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 9.7e-07 58.9 36 75.0


User provided reference genes

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