Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G24001 Striga asiatica HOM05D004825 ORTHO05D005415 1.1e-234 816.2 408 100.0
SGA_v2.0_scaffold122G33281 Striga asiatica HOM05D004825 ORTHO05D005415 3.3e-45 186.8 274 46.4
Migut.I01185 Erythranthe guttata HOM05D004825 ORTHO05D005415 1.1e-29 135.2 277 37.2
MSTRG.10886 Avicennia marina HOM05D004825 ORTHO05D005415 5.6e-29 132.9 283 37.1
SalBow6G3714 Salvia bowleyana HOM05D004825 ORTHO05D005415 3.8e-25 120.2 271 35.8
Oeu023621.1 Olea europaea HOM05D004825 ORTHO05D005415 4.6e-23 113.2 276 35.5
unitig_32.g11006 Utricularia gibba HOM05D004825 ORTHO05D005415 1.6e-20 104.8 212 34.4
Rhsim10G0138100 Rhododendron simsii HOM05D004825 ORTHO05D005415 1.4e-19 101.7 249 33.3
Sed0020944 Sechium edule HOM05D004825 ORTHO05D005415 1.4e-19 101.7 208 35.1
MELO3C008585.2 Cucumis melo HOM05D004825 ORTHO05D005415 5.3e-19 99.8 208 34.1
SalBow6G0845 Salvia bowleyana HOM05D004825 ORTHO05D005415 5.3e-19 99.8 273 32.6
vmacro12851 Vaccinium macrocarpon HOM05D004825 ORTHO05D005415 5.3e-19 99.8 208 35.6
QL02p047766 Quercus lobata HOM05D004825 ORTHO05D005415 2.6e-18 97.4 208 34.1
CsaV3_2G010380 Cucumis sativus L. HOM05D004825 ORTHO05D005415 5.8e-18 96.3 208 34.1
Cfa006284 Carpinus fangiana HOM05D004825 ORTHO05D005415 1.0e-17 95.5 208 34.1
CAN.G1086.4 Capsicum annuum HOM05D004825 ORTHO05D005415 5.0e-17 93.2 208 33.7
CiPaw.07G074800 Carya illinoinensis HOM05D004825 ORTHO05D005415 5.0e-17 93.2 208 33.2
Cc09_g03390 Coffea canephora HOM05D004825 ORTHO05D005415 6.5e-17 92.8 209 35.4
Thecc.05G205800 Theobroma cacao HOM05D004825 ORTHO05D005415 6.5e-17 92.8 214 33.2
Duzib128G0048 Durio zibethinus HOM05D004825 ORTHO05D005415 8.4e-17 92.4 207 32.9
Prupe.6G359000 Prunus persica HOM05D004825 ORTHO05D005415 1.1e-16 92.0 210 32.9
ClCG11G007410 Citrullus lanatus HOM05D004825 ORTHO05D005415 3.2e-16 90.5 213 32.4
Solyc11g013080.3 Solanum lycopersicum HOM05D004825 ORTHO05D005415 4.2e-16 90.1 208 33.2
Nitab4.5_0000167g0020 Nicotiana tabacum HOM05D004825 ORTHO05D005415 7.1e-16 89.4 208 33.2
RcHm_v2.0_Chr3g0448251 Rosa chinensis HOM05D004825 ORTHO05D005415 7.1e-16 89.4 208 31.7
Solyc11g018740.3 Solanum lycopersicum HOM05D004825 ORTHO05D005415 7.1e-16 89.4 214 32.2
Actinidia06813 Actinidia chinensis HOM05D004825 ORTHO05D005415 1.6e-15 88.2 207 30.9
GSVIVG01019145001 Vitis vinifera HOM05D004825 ORTHO05D005415 2.1e-15 87.8 223 33.6
FAN09G1822 Fragaria x ananassa HOM05D004825 ORTHO05D005415 2.7e-15 87.4 208 32.2
MD12G1258300 Malus domestica HOM05D004825 ORTHO05D005415 2.7e-15 87.4 226 31.9
FAN14G5305 Fragaria x ananassa HOM05D004825 ORTHO05D005415 3.5e-15 87.0 208 32.2
Lalb_Chr19g0126781 Lupinus albus HOM05D004825 ORTHO05D005415 4.6e-15 86.7 227 32.6
Sopen11g009760 Solanum pennellii HOM05D004825 ORTHO05D005415 4.6e-15 86.7 214 31.8
FAN05G3281 Fragaria x ananassa HOM05D004825 ORTHO05D005415 1.0e-14 85.5 235 30.6
Gohir.A09G053766 Gossypium hirsutum HOM05D004825 ORTHO05D005415 1.0e-14 85.5 208 30.8
Nitab4.5_0004158g0040 Nicotiana tabacum HOM05D004825 ORTHO05D005415 1.8e-14 84.7 208 32.7
A06p22020 Brassica napus HOM05D004825 ORTHO05D005415 2.3e-14 84.3 246 28.0
Gohir.D09G053068 Gossypium hirsutum HOM05D004825 ORTHO05D005415 2.3e-14 84.3 208 30.8
Gorai.006G054700 Gossypium raimondii HOM05D004825 ORTHO05D005415 2.3e-14 84.3 208 30.8
BraA06t25290Z Brassica rapa HOM05D004825 ORTHO05D005415 3.0e-14 84.0 202 30.2
FvH4_6g00770 Fragaria vesca HOM05D004825 ORTHO05D005415 3.9e-14 83.6 208 31.7
TAR374G0592 Trochodendron aralioides HOM05D004825 ORTHO05D005415 3.9e-14 83.6 202 30.7
Phvul.008G056000 Phaseolus vulgaris HOM05D004825 ORTHO05D005415 5.1e-14 83.2 234 32.1
COL.COLO4_07810 Corchorus olitorius HOM05D004825 ORTHO05D005415 6.7e-14 82.8 235 31.1
Dinv09864 Davidia involucrata HOM05D004825 ORTHO05D005415 6.7e-14 82.8 208 32.7
BcaB01g01166 Brassica carinata HOM05D004825 ORTHO05D005415 1.1e-13 82.0 243 28.4
FAN02G3908 Fragaria x ananassa HOM05D004825 ORTHO05D005415 1.1e-13 82.0 208 30.8
VMungo1383G1726 Vigna mungo HOM05D004825 ORTHO05D005415 1.1e-13 82.0 223 32.3
DCAR_003341 Daucus carota HOM05D004825 ORTHO05D005415 1.5e-13 81.6 208 31.2
TWI59G0982 Tripterygium wilfordii HOM05D004825 ORTHO05D005415 1.5e-13 81.6 237 29.1
AL5G22510 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 1.9e-13 81.3 200 30.5
AL5G22530 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 1.9e-13 81.3 200 30.5
Atru.chr12.2135 Acer truncatum HOM05D004825 ORTHO05D005415 2.5e-13 80.9 253 28.1
Carub.0005s1010 Capsella rubella HOM05D004825 ORTHO05D005415 2.5e-13 80.9 202 30.7
Hma1.2p1_0220F.1_g093020 Hydrangea macrophylla HOM05D004825 ORTHO05D005415 3.3e-13 80.5 208 30.3
Nn3g16227 Nelumbo nucifera HOM05D004825 ORTHO05D005415 4.3e-13 80.1 210 31.0
Potri.013G087950 Populus trichocarpa HOM05D004825 ORTHO05D005415 5.7e-13 79.7 214 30.4
RcHm_v2.0_Chr3g0448211 Rosa chinensis HOM05D004825 ORTHO05D005415 7.4e-13 79.3 202 31.7
BcaC01g02045 Brassica carinata HOM05D004825 ORTHO05D005415 9.7e-13 79.0 216 29.6
C03p69210 Brassica napus HOM05D004825 ORTHO05D005415 9.7e-13 79.0 216 29.6
BolC3t19174H Brassica oleracea HOM05D004825 ORTHO05D005415 9.7e-13 79.0 216 29.6
ECA233G4148 Erigeron canadensis HOM05D004825 ORTHO05D005415 9.7e-13 79.0 207 29.0
AT3G44370 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 1.3e-12 78.6 196 30.1
Manes.09G184100 Manihot esculenta HOM05D004825 ORTHO05D005415 1.3e-12 78.6 208 27.9
Ciclev10007912m.g Citrus clementina HOM05D004825 ORTHO05D005415 2.2e-12 77.8 208 29.3
Glyma.18G240200 Glycine max HOM05D004825 ORTHO05D005415 2.8e-12 77.4 239 30.1
CARHR104500 Cardamine hirsuta HOM05D004825 ORTHO05D005415 3.7e-12 77.0 196 31.6
AT1G65080 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 6.3e-12 76.3 208 33.2
Sp5g16820 Schrenkiella parvula HOM05D004825 ORTHO05D005415 8.2e-12 75.9 243 27.6
PGSC0003DMG400018032 Solanum tuberosum HOM05D004825 ORTHO05D005415 8.2e-12 75.9 103 40.8
Potri.009G121800 Populus trichocarpa HOM05D004825 ORTHO05D005415 1.1e-11 75.5 192 31.2
Thhalv10010266m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 1.8e-11 74.7 238 27.3
Psat3g104280 Pisum sativum HOM05D004825 ORTHO05D005415 1.8e-11 74.7 227 30.0
AL2G19720 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 2.4e-11 74.3 226 31.4
TPR.G29414 Trifolium pratense HOM05D004825 ORTHO05D005415 2.4e-11 74.3 227 30.0
HanXRQChr01g0025761 Helianthus annuus HOM05D004825 ORTHO05D005415 4.1e-11 73.6 204 29.4
Lj1g0016449 Lotus japonicus HOM05D004825 ORTHO05D005415 4.1e-11 73.6 225 29.8
Ca_07963_v3 Cicer arietinum L. HOM05D004825 ORTHO05D005415 5.3e-11 73.2 220 30.0
Carub.0002s1042 Capsella rubella HOM05D004825 ORTHO05D005415 6.9e-11 72.8 208 32.7
Lsat_1_v5_gn_8_2080 Lactuca sativa HOM05D004825 ORTHO05D005415 6.9e-11 72.8 204 28.9
Medtr7g079500 Medicago truncatula HOM05D004825 ORTHO05D005415 6.9e-11 72.8 227 30.4
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.5e-10 71.6 193 28.5
THA.LOC104814783 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 1.5e-10 71.6 159 32.1
Cpa.g.c33279 Carica papaya HOM05D004825 ORTHO05D005415 2.0e-10 71.2 84 46.4
Sabra09G0094100 Salix brachista HOM05D004825 ORTHO05D005415 2.0e-10 71.2 192 30.7
PGSC0003DMG400014032 Solanum tuberosum HOM05D004825 ORTHO05D005415 2.0e-10 71.2 81 44.4
PGSC0003DMG401000916 Solanum tuberosum HOM05D004825 ORTHO05D005415 2.0e-10 71.2 81 45.7
CARHR056570 Cardamine hirsuta HOM05D004825 ORTHO05D005415 4.5e-10 70.1 208 32.2
Sabra13G0069900 Salix brachista HOM05D004825 ORTHO05D005415 5.9e-10 69.7 214 29.0
Aa31LG2G2270 Aethionema arabicum HOM05D004825 ORTHO05D005415 7.7e-10 69.3 211 30.8
Eucgr.B01387 Eucalyptus grandis HOM05D004825 ORTHO05D005415 7.7e-10 69.3 219 29.2
Peaxi162Scf01013g00123 Petunia axillaris HOM05D004825 ORTHO05D005415 7.7e-10 69.3 84 45.2
PGR119G2407 Punica granatum HOM05D004825 ORTHO05D005415 1.0e-09 68.9 214 27.6
Sp5g19610 Schrenkiella parvula HOM05D004825 ORTHO05D005415 1.0e-09 68.9 207 30.0
SpUn0108_0010 Schrenkiella parvula HOM05D004825 ORTHO05D005415 1.0e-09 68.9 207 30.0
CANSAT54G0263 Cannabis sativa HOM05D004825 ORTHO05D005415 1.3e-09 68.6 84 42.9
Thhalv10022463m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 1.3e-09 68.6 211 30.3
PSO478G4613 Papaver somniferum HOM05D004825 ORTHO05D005415 1.3e-09 68.6 192 26.6
Sc06g0005090 Simmondsia chinensis HOM05D004825 ORTHO05D005415 1.3e-09 68.6 208 27.4
arahy.Tifrunner.gnm1.ann1.B3BVJM Arachis hypogaea HOM05D004825 ORTHO05D005415 5.0e-09 66.6 221 29.0
BcaC03g14674 Brassica carinata HOM05D004825 ORTHO05D005415 8.5e-09 65.9 212 30.2
C02p21130 Brassica napus HOM05D004825 ORTHO05D005415 8.5e-09 65.9 212 30.2
BolC2t08253H Brassica oleracea HOM05D004825 ORTHO05D005415 8.5e-09 65.9 212 30.2
BcaB05g24081 Brassica carinata HOM05D004825 ORTHO05D005415 1.9e-08 64.7 212 29.7
Ah.06g195620 Amaranthus hybridus HOM05D004825 ORTHO05D005415 2.5e-08 64.3 87 39.1
A02p13010 Brassica napus HOM05D004825 ORTHO05D005415 2.5e-08 64.3 212 29.7
BraA02t06357Z Brassica rapa HOM05D004825 ORTHO05D005415 2.5e-08 64.3 212 29.7
PSO017G3896 Papaver somniferum HOM05D004825 ORTHO05D005415 3.2e-08 63.9 192 26.6
Haze_04525 Corylus avellana HOM05D004825 ORTHO05D005415 1.2e-07 62.0 201 31.8
EL10Ac4g09418 Beta vulgaris HOM05D004825 ORTHO05D005415 1.6e-07 61.6 207 26.1
Aqoxy1G01799 Aquilegia oxysepala HOM05D004825 ORTHO05D005415 2.7e-07 60.8 160 30.6
THA.LOC104805710 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 3.6e-07 60.5 210 28.1
arahy.Tifrunner.gnm1.ann1.T0KW2L Arachis hypogaea HOM05D004825 ORTHO05D005415 3.0e-06 57.4 97 36.1


User provided reference genes

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