Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 4.4e-151 538.1 306 100.0
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 3.4e-47 193.0 229 45.4
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 4.5e-47 192.6 155 62.6
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 7.7e-47 191.8 170 58.2
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 2.5e-45 186.8 250 46.8
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 9.4e-45 184.9 243 44.9
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 1.6e-44 184.1 144 61.1
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 3.6e-44 183.0 133 63.9
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 3.6e-44 183.0 224 52.2
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 4.7e-44 182.6 233 48.9
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 1.8e-43 180.6 128 63.3
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 1.8e-43 180.6 149 61.1
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 6.7e-43 178.7 265 43.4
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 6.7e-43 178.7 272 44.1
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 1.1e-42 177.9 244 44.3
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 2.0e-42 177.2 117 71.8
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 2.0e-42 177.2 301 40.2
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 3.3e-42 176.4 134 62.7
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 4.4e-42 176.0 234 48.7
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 5.7e-42 175.6 235 45.5
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 5.7e-42 175.6 121 66.9
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 5.7e-42 175.6 223 47.5
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 7.4e-42 175.3 234 45.3
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 7.4e-42 175.3 236 44.1
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 7.4e-42 175.3 269 42.0
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 7.4e-42 175.3 269 44.2
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 7.4e-42 175.3 217 47.0
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 1.7e-41 174.1 300 43.0
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 1.7e-41 174.1 300 43.0
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 1.7e-41 174.1 300 43.0
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 1.7e-41 174.1 269 42.8
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 3.7e-41 172.9 119 66.4
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 3.7e-41 172.9 233 45.1
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 6.3e-41 172.2 225 45.8
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 8.2e-41 171.8 217 47.5
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 8.2e-41 171.8 242 43.4
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 1.1e-40 171.4 302 37.4
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 1.1e-40 171.4 286 38.5
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 1.4e-40 171.0 237 42.6
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 1.8e-40 170.6 278 41.4
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 3.1e-40 169.9 124 62.1
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 3.1e-40 169.9 123 61.8
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 4.1e-40 169.5 279 40.5
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 4.1e-40 169.5 139 59.7
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 5.3e-40 169.1 132 62.9
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 5.3e-40 169.1 272 40.4
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 7.0e-40 168.7 302 40.4
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 3.5e-39 166.4 120 67.5
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 3.5e-39 166.4 133 60.2
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 4.5e-39 166.0 124 59.7
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 5.9e-39 165.6 218 51.4
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 7.7e-39 165.2 226 50.0
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 1.3e-38 164.5 228 45.2
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 5.0e-38 162.5 122 61.5
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 5.0e-38 162.5 233 42.9
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 5.0e-38 162.5 238 40.8
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 1.1e-37 161.4 129 56.6
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 1.5e-37 161.0 122 60.7
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 1.5e-37 161.0 129 56.6
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 2.5e-37 160.2 122 61.5
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.5e-37 160.2 228 45.2
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 3.2e-37 159.8 124 60.5
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 4.2e-37 159.5 229 50.7
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 5.5e-37 159.1 229 46.3
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 5.5e-37 159.1 130 56.2
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 5.5e-37 159.1 239 44.8
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 7.2e-37 158.7 121 59.5
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 1.2e-36 157.9 117 65.0
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 2.1e-36 157.1 104 70.2
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 3.6e-36 156.4 119 63.0
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 4.7e-36 156.0 129 55.8
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 4.7e-36 156.0 120 61.7
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 4.7e-36 156.0 220 48.6
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 6.1e-36 155.6 252 43.3
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 1.8e-35 154.1 117 63.2
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 1.5e-34 151.0 110 62.7
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 2.2e-33 147.1 133 55.6
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 3.7e-33 146.4 221 42.1
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 5.3e-32 142.5 154 46.8
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 2.6e-31 140.2 223 41.3
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 1.0e-30 138.3 104 61.5
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 1.3e-30 137.9 121 53.7
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 4.7e-28 129.4 104 57.7
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 1.2e-26 124.8 162 38.9
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 1.2e-26 124.8 139 48.2
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 1.3e-25 121.3 236 33.9
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 1.7e-25 120.9 117 47.0
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 2.7e-23 113.6 121 47.9
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 2.7e-23 113.6 107 53.3
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 5.9e-23 112.5 163 39.3
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 1.7e-22 110.9 232 36.6
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.1e-21 108.2 181 47.0
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 1.8e-19 100.9 111 48.6
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 5.2e-19 99.4 106 42.5
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 5.4e-08 62.8 152 38.2
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 2.7e-07 60.5 149 42.3
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 3.5e-07 60.1 30 80.0
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.7e-06 57.8 151 42.4


User provided reference genes

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