Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23960 Striga asiatica HOM05D000278 ORTHO05D402204 5.4e-125 451.1 234 100.0
Duzib116G0529 Durio zibethinus HOM05D000278 ORTHO05D004673 6.8e-11 72.0 137 39.4
FvH4_2g37790 Fragaria vesca HOM05D000278 ORTHO05D004673 4.4e-10 69.3 49 69.4
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 4.4e-10 69.3 49 69.4
FAN20G0278 Fragaria x ananassa HOM05D000278 ORTHO05D004673 4.4e-10 69.3 49 69.4
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 4.4e-10 69.3 49 69.4
MD15G1004500 Malus domestica HOM05D000278 ORTHO05D004673 4.4e-10 69.3 49 69.4
SGA_v2.0_scaffold275G46553 Striga asiatica HOM05D000278 ORTHO05D004673 4.4e-10 69.3 49 69.4
Lj6g0017523 Lotus japonicus HOM05D000278 ORTHO05D004673 5.7e-10 68.9 49 69.4
RcHm_v2.0_Chr6g0303921 Rosa chinensis HOM05D000278 ORTHO05D004673 5.7e-10 68.9 49 69.4
MD08G1005100 Malus domestica HOM05D000278 ORTHO05D004673 9.8e-10 68.2 49 69.4
Prupe.1G357200 Prunus persica HOM05D000278 ORTHO05D004673 9.8e-10 68.2 49 69.4
Solyc11g069000.2 Solanum lycopersicum HOM05D000278 ORTHO05D004673 9.8e-10 68.2 49 67.3
Sopen11g027710 Solanum pennellii HOM05D000278 ORTHO05D004673 9.8e-10 68.2 49 67.3
Actinidia37961 Actinidia chinensis HOM05D000278 ORTHO05D004673 1.3e-09 67.8 159 34.6
CSS0037161 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004673 1.3e-09 67.8 53 64.2
BcaB05g22804 Brassica carinata HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
BcaB08g37325 Brassica carinata HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
BcaC03g13811 Brassica carinata HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
BcaC04g19481 Brassica carinata HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
A03p10340 Brassica napus HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
BNapus_Darmor_BZH_scaffold_38p01290 Brassica napus HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
C02p10490 Brassica napus HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
C03p11870 Brassica napus HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
C09p55210 Brassica napus HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
BolC2t07080H Brassica oleracea HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
BolC3t13657H Brassica oleracea HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
BolC9t58390H Brassica oleracea HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
BraA02t05601Z Brassica rapa HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
BraA03t10345Z Brassica rapa HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
BraA10t43992Z Brassica rapa HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
CAN.G546.19 Capsicum annuum HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
AUR62002414 Chenopodium quinoa HOM05D000278 ORTHO05D004673 1.7e-09 67.4 52 65.4
AUR62023775 Chenopodium quinoa HOM05D000278 ORTHO05D004673 1.7e-09 67.4 52 65.4
Dinv31912 Davidia involucrata HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
Nitab4.5_0005092g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
Peaxi162Scf00892g00123 Petunia axillaris HOM05D000278 ORTHO05D004673 1.7e-09 67.4 171 33.3
SalBow6G3216 Salvia bowleyana HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
Sp6g23630 Schrenkiella parvula HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
SGA_v2.0_scaffold25G11193 Striga asiatica HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
unitig_744.g24606 Utricularia gibba HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
vmacro19453 Vaccinium macrocarpon HOM05D000278 ORTHO05D004673 1.7e-09 67.4 49 67.3
Ca_07625_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 67.3
HanXRQChr02g0048731 Helianthus annuus HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 67.3
HanXRQChr05g0150641 Helianthus annuus HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 67.3
Lsat_1_v5_gn_3_23880 Lactuca sativa HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 67.3
Lsat_1_v5_gn_5_47521 Lactuca sativa HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 67.3
Lj1g0004523 Lotus japonicus HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 67.3
Mapoly0071s0007 Marchantia polymorpha HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 65.3
Pp3c5_16830 Physcomitrium patens HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 65.3
Pp3c6_15940 Physcomitrium patens HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 65.3
Rhsim04G0232000 Rhododendron simsii HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 67.3
Rhsim06G0057200 Rhododendron simsii HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 67.3
RhsimUnG0194000 Rhododendron simsii HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 67.3
Hund12360 Selenicereus undatus HOM05D000278 ORTHO05D004673 2.2e-09 67.0 35 91.4
THA.LOC104800468 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 67.3
THA.LOC104816947 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 67.3
THA.LOC104826462 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 2.2e-09 67.0 49 67.3
Ah.07g202860 Amaranthus hybridus HOM05D000278 ORTHO05D004673 2.8e-09 66.6 49 67.3
Ah.13g073410 Amaranthus hybridus HOM05D000278 ORTHO05D004673 2.8e-09 66.6 49 67.3
EL10Ac3g06108 Beta vulgaris HOM05D000278 ORTHO05D004673 2.8e-09 66.6 49 67.3
COL.COLO4_26052 Corchorus olitorius HOM05D000278 ORTHO05D004673 2.8e-09 66.6 49 67.3
Gohir.A05G181500 Gossypium hirsutum HOM05D000278 ORTHO05D004673 2.8e-09 66.6 49 67.3
Gohir.A05G255100 Gossypium hirsutum HOM05D000278 ORTHO05D004673 2.8e-09 66.6 49 67.3
Gohir.D05G256700 Gossypium hirsutum HOM05D000278 ORTHO05D004673 2.8e-09 66.6 49 67.3
Gorai.009G190000 Gossypium raimondii HOM05D000278 ORTHO05D004673 2.8e-09 66.6 49 67.3
Gorai.009G268200 Gossypium raimondii HOM05D000278 ORTHO05D004673 2.8e-09 66.6 49 67.3
Potri.006G128600 Populus trichocarpa HOM05D000278 ORTHO05D004673 2.8e-09 66.6 49 67.3
Thecc.08G054800 Theobroma cacao HOM05D000278 ORTHO05D004673 2.8e-09 66.6 49 67.3
Aa31LG1G13870 Aethionema arabicum HOM05D000278 ORTHO05D004673 3.7e-09 66.2 49 67.3
AL6G32440 Arabidopsis lyrata HOM05D000278 ORTHO05D004673 3.7e-09 66.2 49 67.3
AT5G20890 Arabidopsis thaliana HOM05D000278 ORTHO05D004673 3.7e-09 66.2 49 67.3
Carub.0006s1918 Capsella rubella HOM05D000278 ORTHO05D004673 3.7e-09 66.2 49 67.3
CAN.G1432.19 Capsicum annuum HOM05D000278 ORTHO05D004673 3.7e-09 66.2 49 65.3
Zm00001eb127430 Zea mays HOM05D000278 ORTHO05D004673 3.7e-09 66.2 49 67.3
Zm00001eb333890 Zea mays HOM05D000278 ORTHO05D004673 3.7e-09 66.2 49 67.3
A10p19170 Brassica napus HOM05D000278 ORTHO05D004673 4.9e-09 65.9 49 65.3
Nitab4.5_0000329g0270 Nicotiana tabacum HOM05D000278 ORTHO05D004673 6.3e-09 65.5 173 32.4
BcaNung05758 Brassica carinata HOM05D000278 ORTHO05D004673 8.3e-09 65.1 35 88.6
Duzib041G0210 Durio zibethinus HOM05D000278 ORTHO05D004673 8.3e-09 65.1 49 65.3
Eucgr.F01711 Eucalyptus grandis HOM05D000278 ORTHO05D004673 8.3e-09 65.1 49 65.3
Nitab4.5_0001163g0130 Nicotiana tabacum HOM05D000278 ORTHO05D004673 8.3e-09 65.1 49 65.3
CDE09G0059 Ceratophyllum demersum HOM05D000278 ORTHO05D004673 1.1e-08 64.7 49 63.3
DCAR_009520 Daucus carota HOM05D000278 ORTHO05D004673 1.1e-08 64.7 49 65.3
Thhalv10013239m.g Eutrema salsugineum HOM05D000278 ORTHO05D004673 1.1e-08 64.7 49 65.3
Nn5g30892 Nelumbo nucifera HOM05D000278 ORTHO05D004673 1.1e-08 64.7 52 61.5
Phvul.011G092200 Phaseolus vulgaris HOM05D000278 ORTHO05D004673 1.1e-08 64.7 49 67.3
Actinidia29778 Actinidia chinensis HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 65.3
ATR0049G084 Amborella trichopoda HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 65.3
Aqoxy6G01859 Aquilegia oxysepala HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 63.3
Aqoxy7G00805 Aquilegia oxysepala HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 63.3
MSTRG.24226 Avicennia marina HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 65.3
CiPaw.07G141600 Carya illinoinensis HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 65.3
Cc01_g07800 Coffea canephora HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 65.3
Dinv32530 Davidia involucrata HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 65.3
Dinv39570 Davidia involucrata HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 65.3
Migut.C00506 Erythranthe guttata HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 65.3
Lj4A877T44 Lonicera japonica HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 65.3
MBI08_g05384_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 65.3
Nn6g31844 Nelumbo nucifera HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 65.3
Os03g0619400 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 65.3
GSVIVG01008708001 Vitis vinifera HOM05D000278 ORTHO05D004673 1.4e-08 64.3 49 65.3
Atru.chr13.180 Acer truncatum HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
arahy.Tifrunner.gnm1.ann1.456QL1 Arachis hypogaea HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
arahy.Tifrunner.gnm1.ann1.N7I05Z Arachis hypogaea HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
MSTRG.22358 Avicennia marina HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 1.8e-08 63.9 49 65.3
Ca_05203_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
Ciclev10000836m.g Citrus clementina HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
MELO3C004636.2 Cucumis melo HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
CsaV3_2G001340 Cucumis sativus L. HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
ECA240G2245 Erigeron canadensis HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
Eucgr.F03537 Eucalyptus grandis HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
Glyma.11G185500 Glycine max HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
Glyma.12G087300 Glycine max HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
Gohir.D05G184500 Gossypium hirsutum HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
Manes.05G141000 Manihot esculenta HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
Manes.18G007600 Manihot esculenta HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
Medtr7g067470 Medicago truncatula HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
Medtr7g113470 Medicago truncatula HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
Psat3g130480 Pisum sativum HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
PGR083G0799 Punica granatum HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
QL02p013553 Quercus lobata HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
Sed0016101 Sechium edule HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
Sed0026774 Sechium edule HOM05D000201 ORTHO05D004673 1.8e-08 63.9 49 65.3
TPR.G31895 Trifolium pratense HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
TPR.G4726 Trifolium pratense HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
TAR381G1660 Trochodendron aralioides HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
VMungo1127G1082 Vigna mungo HOM05D000278 ORTHO05D004673 1.8e-08 63.9 49 65.3
Cpa.g.sc26.235 Carica papaya HOM05D000278 ORTHO05D004673 2.4e-08 63.5 49 65.3
Duzib093G1085 Durio zibethinus HOM05D000278 ORTHO05D004673 2.4e-08 63.5 49 65.3
Lalb_Chr19g0124741 Lupinus albus HOM05D000278 ORTHO05D004673 2.4e-08 63.5 49 65.3
Potri.001G341100 Populus trichocarpa HOM05D000278 ORTHO05D004673 2.4e-08 63.5 49 65.3
SMO116G0467 Selaginella moellendorffii HOM05D000278 ORTHO05D004673 2.4e-08 63.5 49 63.3
TWI36G1689 Tripterygium wilfordii HOM05D000278 ORTHO05D004673 2.4e-08 63.5 49 65.3
TWI56G0512 Tripterygium wilfordii HOM05D000278 ORTHO05D004673 2.4e-08 63.5 49 65.3
AagrBONN_evm.TU.Sc2ySwM_228.4022 Anthoceros agrestis HOM05D000278 ORTHO05D004673 3.1e-08 63.2 49 63.3
CiPaw.08G070800 Carya illinoinensis HOM05D000278 ORTHO05D004673 3.1e-08 63.2 49 65.3
Lalb_Chr03g0043101 Lupinus albus HOM05D000278 ORTHO05D004673 3.1e-08 63.2 49 65.3
ClCG11G001640 Citrullus lanatus HOM05D000278 ORTHO05D004673 5.4e-08 62.4 49 63.3
PSO541G0609 Papaver somniferum HOM05D000278 ORTHO05D004673 5.4e-08 62.4 49 61.2
PSO675G6493 Papaver somniferum HOM05D000278 ORTHO05D004673 5.4e-08 62.4 49 61.2
Sc09g0003140 Simmondsia chinensis HOM05D000278 ORTHO05D004673 5.4e-08 62.4 49 65.3
Lj4A930T44 Lonicera japonica HOM05D000278 ORTHO05D004673 7.0e-08 62.0 35 85.7
Nitab4.5_0012306g0010 Nicotiana tabacum HOM05D000278 ORTHO05D004673 7.0e-08 62.0 35 85.7
Duzib133G0408 Durio zibethinus HOM05D000278 ORTHO05D004673 2.7e-07 60.1 49 65.3
SEGI_28270 Sequoiadendron giganteum HOM05D000278 ORTHO05D004673 4.5e-07 59.3 49 61.2
CBR_g20448 Chara braunii HOM05D000278 ORTHO05D004673 1.3e-06 57.8 49 59.2
Cre09.g416750 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004673 6.6e-06 55.5 49 53.1


User provided reference genes

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