Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 2.5e-145 518.8 280 100.0
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 1.9e-100 369.8 284 67.6
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 7.4e-97 357.8 286 68.2
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 1.8e-90 336.7 282 65.6
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 6.3e-80 301.6 284 57.0
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.1e-79 300.8 284 56.3
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 1.0e-77 294.3 285 55.8
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 5.0e-77 292.0 277 56.3
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 4.2e-76 288.9 285 54.7
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 9.4e-76 287.7 286 56.6
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.2e-75 287.3 284 55.3
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 1.2e-75 287.3 285 54.7
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 2.1e-75 286.6 286 55.9
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 4.7e-75 285.4 283 56.5
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 8.0e-75 284.6 283 57.2
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 8.0e-75 284.6 279 57.7
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 1.0e-74 284.3 285 53.7
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 1.4e-74 283.9 285 55.4
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 1.4e-74 283.9 287 55.1
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 6.7e-74 281.6 284 54.9
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 6.7e-74 281.6 282 52.5
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 3.3e-73 279.3 281 54.1
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.3e-73 279.3 279 55.6
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 4.4e-73 278.9 283 53.4
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 1.3e-72 277.3 286 54.5
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 1.3e-72 277.3 279 54.1
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 1.7e-72 276.9 284 52.8
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.7e-72 276.9 282 55.0
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 2.2e-72 276.6 280 55.0
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 2.2e-72 276.6 277 54.5
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.2e-72 276.6 282 54.6
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.8e-72 276.2 279 55.2
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 3.7e-72 275.8 286 53.5
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 3.7e-72 275.8 282 53.5
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 4.8e-72 275.4 283 53.4
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 6.3e-72 275.0 280 55.0
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 6.3e-72 275.0 281 52.7
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 8.2e-72 274.6 288 53.5
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 1.1e-71 274.2 281 55.2
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 1.1e-71 274.2 281 55.2
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 1.4e-71 273.9 286 52.8
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 3.1e-71 272.7 281 55.2
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 4.1e-71 272.3 281 55.2
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 5.3e-71 271.9 284 52.1
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 5.3e-71 271.9 237 61.6
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 7.0e-71 271.6 294 52.4
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 7.0e-71 271.6 280 54.3
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 9.1e-71 271.2 281 54.8
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 9.1e-71 271.2 280 53.9
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 9.1e-71 271.2 280 53.9
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 9.1e-71 271.2 286 53.1
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 1.2e-70 270.8 279 50.5
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 1.2e-70 270.8 286 53.8
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.6e-70 270.4 293 52.6
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 1.6e-70 270.4 280 55.0
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.0e-70 270.0 293 52.2
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 2.0e-70 270.0 271 54.2
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 2.6e-70 269.6 281 54.4
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 7.7e-70 268.1 281 54.1
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 1.0e-69 267.7 280 53.6
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 1.3e-69 267.3 286 51.4
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 2.2e-69 266.5 288 52.4
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 2.9e-69 266.2 285 54.4
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 2.9e-69 266.2 286 52.8
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 3.8e-69 265.8 284 52.5
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 5.0e-69 265.4 280 52.5
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 6.5e-69 265.0 280 52.5
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 6.5e-69 265.0 287 50.2
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 8.5e-69 264.6 290 52.8
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 1.1e-68 264.2 290 50.7
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 1.5e-68 263.8 290 51.0
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 4.2e-68 262.3 275 52.4
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 4.2e-68 262.3 282 50.0
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 4.2e-68 262.3 281 51.2
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 3.6e-67 259.2 281 50.9
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 3.6e-67 259.2 287 51.6
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 4.7e-67 258.8 284 51.4
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 6.1e-67 258.5 284 52.1
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 8.0e-67 258.1 280 51.8
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 1.4e-66 257.3 283 51.6
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.4e-66 257.3 280 51.8
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 3.0e-66 256.1 288 48.6
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 5.2e-66 255.4 281 49.5
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 2.6e-65 253.1 194 67.5
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 9.8e-65 251.1 288 50.7
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.2e-64 250.0 310 48.1
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 3.7e-64 249.2 341 43.4
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 4.8e-64 248.8 282 49.6
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 1.1e-63 247.7 282 49.6
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 1.4e-63 247.3 288 53.5
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 1.8e-63 246.9 292 48.6
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 1.8e-63 246.9 210 61.9
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 2.4e-63 246.5 280 48.6
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.1e-63 246.1 285 50.2
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 1.2e-62 244.2 249 54.2
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 1.6e-62 243.8 229 56.3
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 3.5e-62 242.7 281 46.6
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 1.7e-61 240.4 281 49.5
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 1.7e-61 240.4 220 57.3
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 2.2e-61 240.0 285 49.1
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 6.5e-61 238.4 250 53.2
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 3.2e-60 236.1 302 46.0
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 3.2e-60 236.1 229 53.7
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 3.2e-60 236.1 270 51.9
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 5.5e-60 235.3 314 45.9
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 5.5e-60 235.3 239 53.6
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 9.4e-60 234.6 210 58.6
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 9.4e-60 234.6 280 47.1
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 2.1e-59 233.4 194 62.9
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 2.1e-59 233.4 212 58.5
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 4.7e-59 232.3 194 60.3
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 4.7e-59 232.3 226 55.8
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 4.0e-58 229.2 278 46.8
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 2.6e-57 226.5 190 60.5
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 3.7e-56 222.6 279 45.2
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 3.1e-55 219.5 307 45.9
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 4.1e-55 219.2 206 56.8
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.2e-54 217.6 231 53.2
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 4.5e-54 215.7 211 52.1
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 4.0e-50 202.6 210 52.9
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.7e-45 187.2 286 44.1
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 1.1e-44 184.5 228 38.6
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 5.6e-44 182.2 203 48.8
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 9.5e-44 181.4 236 44.5
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 6.4e-40 168.7 291 34.0
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.6e-37 158.7 173 52.6
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 3.2e-31 139.8 195 44.1
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 1.7e-29 134.0 205 35.6
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 2.3e-29 133.7 195 42.6
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 1.9e-28 130.6 117 55.6
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.5e-28 130.2 96 65.6
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 4.0e-26 122.9 231 39.0
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.9e-24 116.7 123 52.8
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 5.4e-23 112.5 276 30.8
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 3.0e-21 106.7 125 52.8
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 3.9e-21 106.3 125 50.4
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 7.6e-17 92.0 86 54.7
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 3.5e-14 83.2 197 25.4
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 1.9e-12 77.4 127 37.0
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 1.9e-12 77.4 136 36.0
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 2.8e-11 73.6 200 31.0
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 8.1e-11 72.0 92 45.7
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 1.3e-08 64.7 110 38.2
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 2.9e-08 63.5 49 67.3
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.4e-07 61.2 44 63.6
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 3.2e-07 60.1 108 29.6
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 7.1e-07 58.9 84 41.7
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 9.3e-07 58.5 95 34.7
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 4.6e-06 56.2 56 53.6
TPR.G14723 Trifolium pratense HOM05D004903 ORTHO05D005849 7.9e-06 55.5 48 62.5


User provided reference genes

Program Settings