Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23942 Striga asiatica HOM05D029890 ORTHO05D004838 1.5e-104 382.9 192 100.0
SGA_v2.0_scaffold16G07632 Striga asiatica HOM05D029890 ORTHO05D004838 4.0e-94 348.2 192 93.2
SGA_v2.0_scaffold2287G54099 Striga asiatica HOM05D029890 ORTHO05D403985 2.3e-33 146.4 79 96.2
ECA240G1189 Erigeron canadensis HOM05D003489 ORTHO05D004109 3.4e-08 62.8 76 48.7
SGA_v2.0_scaffold47G17759 Striga asiatica HOM05D003489 ORTHO05D004109 7.5e-08 61.6 47 68.1
Migut.M01523 Erythranthe guttata HOM05D003489 ORTHO05D004109 1.3e-07 60.8 47 66.0
Lsat_1_v5_gn_7_75601 Lactuca sativa HOM05D003489 ORTHO05D004109 1.3e-07 60.8 60 56.7
CARHR087330 Cardamine hirsuta HOM05D003489 ORTHO05D004109 1.7e-07 60.5 47 66.0
MSTRG.16098 Avicennia marina HOM05D003489 ORTHO05D004109 2.2e-07 60.1 47 66.0
SalBow5G3597 Salvia bowleyana HOM05D004950 ORTHO05D004838 2.2e-07 60.1 96 41.7
Cpa.g.sc32.32 Carica papaya HOM05D003489 ORTHO05D033846 2.9e-07 59.7 54 59.3
PGR031G2340 Punica granatum HOM05D003489 ORTHO05D004109 3.7e-07 59.3 47 66.0
Migut.H01667 Erythranthe guttata HOM05D003489 ORTHO05D004109 4.9e-07 58.9 70 50.0
HanXRQChr03g0078181 Helianthus annuus HOM05D003489 ORTHO05D004109 4.9e-07 58.9 47 61.7
Lsat_1_v5_gn_3_107180 Lactuca sativa HOM05D003489 ORTHO05D004109 4.9e-07 58.9 70 51.4
AL3G24480 Arabidopsis lyrata HOM05D003489 ORTHO05D004109 6.4e-07 58.5 46 67.4
AT3G12800 Arabidopsis thaliana HOM05D003489 ORTHO05D004109 6.4e-07 58.5 46 67.4
Carub.0003s1216 Capsella rubella HOM05D003489 ORTHO05D004109 6.4e-07 58.5 46 67.4
Cfa019401 Carpinus fangiana HOM05D003489 ORTHO05D004109 6.4e-07 58.5 47 66.0
RcHm_v2.0_Chr5g0024271 Rosa chinensis HOM05D003489 ORTHO05D004109 6.4e-07 58.5 47 66.0
Thhalv10021233m.g Eutrema salsugineum HOM05D003489 ORTHO05D004109 8.3e-07 58.2 47 63.8
Peaxi162Scf00452g00336 Petunia axillaris HOM05D003489 ORTHO05D004109 8.3e-07 58.2 47 63.8
Sabra12G0094800 Salix brachista HOM05D003489 ORTHO05D004109 8.3e-07 58.2 47 63.8
Sp3g10955 Schrenkiella parvula HOM05D003489 ORTHO05D004109 8.3e-07 58.2 47 63.8
SGA_v2.0_scaffold115G32166 Striga asiatica HOM05D004950 ORTHO05D004838 1.1e-06 57.8 96 42.7
Ah.10g033720 Amaranthus hybridus HOM05D003489 ORTHO05D004109 1.4e-06 57.4 47 63.8
Lj2A13T24 Lonicera japonica HOM05D003489 ORTHO05D004109 1.4e-06 57.4 47 61.7
THA.LOC104826329 Tarenaya hassleriana HOM05D003489 ORTHO05D004109 1.4e-06 57.4 47 61.7
HanXRQChr03g0078191 Helianthus annuus HOM05D003489 ORTHO05D004109 1.9e-06 57.0 47 59.6
Hma1.2p1_0151F.1_g067260 Hydrangea macrophylla HOM05D003489 ORTHO05D004109 1.9e-06 57.0 70 47.1
Lj3g0015370 Lotus japonicus HOM05D003489 ORTHO05D004109 1.9e-06 57.0 47 59.6
Sc18g0003310 Simmondsia chinensis HOM05D003489 ORTHO05D004109 1.9e-06 57.0 47 63.8
arahy.Tifrunner.gnm1.ann1.JYF968 Arachis hypogaea HOM05D003489 ORTHO05D004109 2.4e-06 56.6 47 59.6
arahy.Tifrunner.gnm1.ann1.T86MTP Arachis hypogaea HOM05D003489 ORTHO05D004109 2.4e-06 56.6 47 59.6
CANSAT80G0618 Cannabis sativa HOM05D003489 ORTHO05D004109 2.4e-06 56.6 46 67.4
FAN16G1927 Fragaria x ananassa HOM05D003489 ORTHO05D004109 2.4e-06 56.6 47 61.7
FAN25G0305 Fragaria x ananassa HOM05D003489 ORTHO05D004109 2.4e-06 56.6 47 61.7
Oeu019723.1 Olea europaea HOM05D003489 ORTHO05D004109 2.4e-06 56.6 47 61.7
Actinidia22416 Actinidia chinensis HOM05D003489 ORTHO05D004109 3.2e-06 56.2 42 69.0
Glyma.15G213100 Glycine max HOM05D003489 ORTHO05D004109 3.2e-06 56.2 61 45.9
Potri.012G125900 Populus trichocarpa HOM05D003489 ORTHO05D004109 3.2e-06 56.2 47 61.7
unitig_578.g16335 Utricularia gibba HOM05D003489 ORTHO05D004109 3.2e-06 56.2 60 55.0
BcaB06g25510 Brassica carinata HOM05D003489 ORTHO05D004109 4.1e-06 55.8 47 63.8
A05p36670 Brassica napus HOM05D001395 ORTHO05D004109 4.1e-06 55.8 47 63.8
C05p55120 Brassica napus HOM05D001395 ORTHO05D004109 4.1e-06 55.8 47 63.8
BolC5t34180H Brassica oleracea HOM05D001395 ORTHO05D004109 4.1e-06 55.8 47 63.8
CiPaw.11G061000 Carya illinoinensis HOM05D003489 ORTHO05D004109 4.1e-06 55.8 47 63.8
Dinv19586 Davidia involucrata HOM05D003489 ORTHO05D004109 4.1e-06 55.8 47 61.7
Duzib268G0350 Durio zibethinus HOM05D003489 ORTHO05D004109 4.1e-06 55.8 47 61.7
Lalb_Chr19g0133211 Lupinus albus HOM05D003489 ORTHO05D004109 4.1e-06 55.8 46 60.9
Medtr8g442750 Medicago truncatula HOM05D003489 ORTHO05D004109 4.1e-06 55.8 47 57.4
RcHm_v2.0_Chr5g0020441 Rosa chinensis HOM05D003489 ORTHO05D004109 4.1e-06 55.8 47 59.6
Sp3g10960 Schrenkiella parvula HOM05D003489 ORTHO05D004109 4.1e-06 55.8 47 63.8
A03p37810 Brassica napus HOM05D003489 ORTHO05D004109 5.4e-06 55.5 47 63.8
BraA03t12936Z Brassica rapa HOM05D003489 ORTHO05D004109 5.4e-06 55.5 47 63.8
CSS0044390 Camellia sinensis var. sinensis HOM05D003489 ORTHO05D004109 5.4e-06 55.5 46 63.0
Ca_25908_v3 Cicer arietinum L. HOM05D003489 ORTHO05D004109 5.4e-06 55.5 47 57.4
Ca_30115_v3 Cicer arietinum L. HOM05D003489 ORTHO05D004109 5.4e-06 55.5 47 57.4
Cc05_g16430 Coffea canephora HOM05D003489 ORTHO05D004109 5.4e-06 55.5 47 59.6
Lj2A345T27 Lonicera japonica HOM05D003489 ORTHO05D004109 5.4e-06 55.5 64 50.0
Psat4g137680 Pisum sativum HOM05D003489 ORTHO05D004109 5.4e-06 55.5 47 57.4
Prupe.4G132600 Prunus persica HOM05D003489 ORTHO05D004109 5.4e-06 55.5 46 65.2
Rhsim04G0003000 Rhododendron simsii HOM05D003489 ORTHO05D004109 5.4e-06 55.5 47 59.6
Aa31LG8G80 Aethionema arabicum HOM05D003489 ORTHO05D004109 7.0e-06 55.1 47 63.8
EL10Ac2g03234 Beta vulgaris HOM05D003489 ORTHO05D004109 7.0e-06 55.1 47 63.8
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 7.0e-06 55.1 98 40.8
Migut.L00159 Erythranthe guttata HOM05D004950 ORTHO05D004838 7.0e-06 55.1 96 39.6
FvH4_3g12490 Fragaria vesca HOM05D003489 ORTHO05D004109 7.0e-06 55.1 47 59.6
Hma1.2p1_0181F.1_g080070 Hydrangea macrophylla HOM05D003489 ORTHO05D004109 7.0e-06 55.1 42 61.9
SalBow8G4095 Salvia bowleyana HOM05D003489 ORTHO05D004109 7.0e-06 55.1 47 61.7
Ciclev10005524m.g Citrus clementina HOM05D003489 ORTHO05D004109 9.2e-06 54.7 46 63.0
ECA246G5026 Erigeron canadensis HOM05D003489 ORTHO05D004109 9.2e-06 54.7 46 60.9
Eucgr.F04461 Eucalyptus grandis HOM05D003489 ORTHO05D004109 9.2e-06 54.7 47 61.7
PSO541G1044 Papaver somniferum HOM05D003489 ORTHO05D004109 9.2e-06 54.7 46 60.9
PSO675G9327 Papaver somniferum HOM05D003489 ORTHO05D004109 9.2e-06 54.7 46 60.9
TPR.G9418 Trifolium pratense HOM05D003489 ORTHO05D004109 9.2e-06 54.7 47 57.4


User provided reference genes

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