Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 8.5e-85 317.0 165 100.0
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 3.6e-75 285.0 168 90.5
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 8.7e-29 131.0 178 50.0
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.5e-28 129.4 181 47.5
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 1.1e-26 124.0 162 47.5
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 4.0e-26 122.1 142 47.2
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.5e-25 120.2 155 51.6
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 3.4e-25 119.0 144 50.0
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 4.5e-25 118.6 147 48.3
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 4.5e-25 118.6 140 52.9
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 7.6e-25 117.9 125 52.8
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 7.6e-25 117.9 129 55.8
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 7.6e-25 117.9 157 44.6
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 9.9e-25 117.5 147 50.3
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.3e-24 117.1 141 46.8
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 1.7e-24 116.7 159 46.5
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 4.9e-24 115.2 185 43.2
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 6.4e-24 114.8 147 43.5
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 6.4e-24 114.8 140 48.6
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 8.4e-24 114.4 120 50.0
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 8.4e-24 114.4 120 50.0
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.1e-23 114.0 157 44.6
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 1.4e-23 113.6 155 43.9
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.4e-23 113.6 158 44.9
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 1.9e-23 113.2 114 54.4
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.9e-23 113.2 168 42.9
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 3.2e-23 112.5 149 44.3
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 3.2e-23 112.5 164 43.9
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 3.2e-23 112.5 157 44.6
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 5.4e-23 111.7 165 44.2
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.2e-22 110.5 160 43.8
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 1.2e-22 110.5 124 51.6
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 2.7e-22 109.4 127 44.9
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 2.7e-22 109.4 115 52.2
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 4.6e-22 108.6 131 48.9
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 4.6e-22 108.6 152 42.8
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 4.6e-22 108.6 152 42.8
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 4.6e-22 108.6 159 43.4
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 6.0e-22 108.2 152 44.1
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 6.0e-22 108.2 174 38.5
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 6.0e-22 108.2 126 47.6
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 1.3e-21 107.1 161 42.9
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 1.3e-21 107.1 141 48.9
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 1.3e-21 107.1 141 44.7
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.3e-21 107.1 143 44.1
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 1.8e-21 106.7 159 42.8
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 1.8e-21 106.7 167 40.7
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 1.8e-21 106.7 134 44.8
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.3e-21 106.3 142 45.8
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 3.0e-21 105.9 134 44.8
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 6.7e-21 104.8 169 42.6
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 6.7e-21 104.8 176 39.2
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 6.7e-21 104.8 149 45.0
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 6.7e-21 104.8 142 45.1
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 8.7e-21 104.4 171 40.9
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 1.1e-20 104.0 158 44.3
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.1e-20 104.0 167 42.5
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.5e-20 103.6 154 41.6
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 3.3e-20 102.4 166 42.8
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 3.3e-20 102.4 166 40.4
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 3.3e-20 102.4 139 46.8
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 4.3e-20 102.1 127 43.3
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 5.6e-20 101.7 143 41.3
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 5.6e-20 101.7 128 49.2
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 5.6e-20 101.7 122 45.9
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 7.4e-20 101.3 158 39.9
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 7.4e-20 101.3 136 47.8
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 7.4e-20 101.3 136 47.8
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 9.6e-20 100.9 167 37.7
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 1.3e-19 100.5 162 38.9
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 1.3e-19 100.5 122 45.1
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 1.6e-19 100.1 126 43.7
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 1.6e-19 100.1 123 45.5
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.6e-19 100.1 137 45.3
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 2.1e-19 99.8 148 43.2
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 2.8e-19 99.4 170 38.2
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 3.6e-19 99.0 161 42.2
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 3.6e-19 99.0 141 44.7
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 3.6e-19 99.0 149 43.6
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 4.8e-19 98.6 159 41.5
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 4.8e-19 98.6 158 43.0
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 4.8e-19 98.6 150 42.7
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 6.2e-19 98.2 166 39.2
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 8.1e-19 97.8 145 39.3
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.1e-18 97.4 129 47.3
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 1.4e-18 97.1 141 41.8
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.4e-18 96.3 113 51.3
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 5.3e-18 95.1 146 42.5
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 9.0e-18 94.4 146 43.8
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 9.0e-18 94.4 146 43.8
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 9.0e-18 94.4 144 41.0
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 9.0e-18 94.4 131 40.5
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 2.0e-17 93.2 142 41.5
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 2.0e-17 93.2 93 55.9
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 2.0e-17 93.2 180 37.8
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 2.0e-17 93.2 140 40.0
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 3.4e-17 92.4 133 41.4
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 4.5e-17 92.0 152 42.1
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 5.8e-17 91.7 126 42.1
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 7.6e-17 91.3 133 37.6
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 7.6e-17 91.3 141 42.6
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 9.9e-17 90.9 126 41.3
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 9.9e-17 90.9 149 40.9
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.3e-16 90.5 138 43.5
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 2.9e-16 89.4 107 43.9
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 2.9e-16 89.4 123 43.1
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 2.9e-16 89.4 123 42.3
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 2.9e-16 89.4 123 42.3
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 2.9e-16 89.4 155 40.6
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 3.8e-16 89.0 107 44.9
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 3.8e-16 89.0 107 44.9
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 3.8e-16 89.0 107 44.9
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 3.8e-16 89.0 117 42.7
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 3.8e-16 89.0 123 42.3
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 3.8e-16 89.0 156 41.0
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 3.8e-16 89.0 127 44.1
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 6.4e-16 88.2 130 42.3
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 1.4e-15 87.0 153 35.9
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 2.4e-15 86.3 152 38.8
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 1.2e-14 84.0 156 39.1
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 2.1e-14 83.2 156 39.1
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 2.1e-14 83.2 112 44.6
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 7.9e-14 81.3 156 38.5
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.0e-13 80.9 125 38.4
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 1.0e-13 80.9 156 38.5
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 1.0e-13 80.9 156 38.5
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 3.0e-13 79.3 158 36.1
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 1.1e-12 77.4 44 77.3
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 3.3e-12 75.9 134 40.3
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 7.4e-12 74.7 142 35.2
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 2.8e-11 72.8 152 36.8
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 1.8e-10 70.1 130 31.5
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 5.3e-10 68.6 109 36.7
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 6.9e-10 68.2 62 54.8
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 2.0e-09 66.6 126 32.5
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 1.3e-08 63.9 131 34.4
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.2e-08 63.2 89 44.9
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.1e-07 60.8 147 35.4
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 2.5e-07 59.7 73 47.9
Migut.E00712 Erythranthe guttata HOM05D005336 ORTHO05D006511 3.2e-07 59.3 102 40.2
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 3.2e-07 59.3 149 32.2
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 3.5e-06 55.8 142 28.9
AL3G53330 Arabidopsis lyrata HOM05D007918 ORTHO05D010025 6.0e-06 55.1 78 47.4
AT2G20362 Arabidopsis thaliana HOM05D007918 ORTHO05D010025 6.0e-06 55.1 77 48.1
Thhalv10002121m.g Eutrema salsugineum HOM05D007918 ORTHO05D010025 6.0e-06 55.1 76 48.7


User provided reference genes

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