Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 1.4e-56 222.6 107 100.0
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 1.8e-19 99.4 92 54.3
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 2.4e-19 99.0 96 58.3
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 2.9e-17 92.0 112 48.2
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 7.1e-16 87.4 93 54.8
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 7.1e-16 87.4 102 47.1
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 1.2e-15 86.7 107 44.9
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 6.0e-15 84.3 97 45.4
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 2.3e-14 82.4 50 64.0
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 5.1e-14 81.3 101 47.5
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 5.1e-14 81.3 101 47.5
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 1.1e-13 80.1 99 40.4
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 2.5e-13 79.0 109 41.3
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 5.6e-13 77.8 109 43.1
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 7.4e-13 77.4 92 45.7
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 1.3e-12 76.6 100 40.0
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.6e-12 76.3 86 46.5
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 1.6e-12 76.3 89 39.3
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 1.6e-12 76.3 97 41.2
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 2.8e-12 75.5 86 50.0
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 2.8e-12 75.5 102 41.2
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 2.8e-12 75.5 87 46.0
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 4.8e-12 74.7 97 43.3
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 8.2e-12 73.9 71 49.3
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.1e-11 73.6 86 46.5
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 1.1e-11 73.6 60 53.3
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.1e-11 73.6 49 65.3
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.4e-11 73.2 104 39.4
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.8e-11 72.8 86 44.2
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 3.1e-11 72.0 64 53.1
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 3.1e-11 72.0 50 60.0
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 6.9e-11 70.9 103 37.9
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 6.9e-11 70.9 37 75.7
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 9.0e-11 70.5 68 45.6
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 1.2e-10 70.1 39 74.4
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 1.2e-10 70.1 81 42.0
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.5e-10 69.7 98 36.7
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.5e-10 69.7 50 64.0
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 2.0e-10 69.3 41 70.7
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 2.6e-10 68.9 98 42.9
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 2.6e-10 68.9 39 69.2
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 2.6e-10 68.9 49 61.2
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 3.4e-10 68.6 51 56.9
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.4e-10 68.6 76 42.1
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 3.4e-10 68.6 50 62.0
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 4.5e-10 68.2 91 45.1
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 4.5e-10 68.2 87 47.1
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 7.6e-10 67.4 50 54.0
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 7.6e-10 67.4 95 35.8
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 1.0e-09 67.0 103 35.0
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.0e-09 67.0 88 42.0
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 1.0e-09 67.0 37 78.4
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.0e-09 67.0 59 47.5
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.0e-09 67.0 59 47.5
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.0e-09 67.0 98 34.7
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 1.3e-09 66.6 52 48.1
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 1.3e-09 66.6 51 64.7
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.7e-09 66.2 76 44.7
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.7e-09 66.2 76 44.7
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 1.7e-09 66.2 80 42.5
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.7e-09 66.2 50 52.0
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 2.2e-09 65.9 103 35.0
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 2.9e-09 65.5 73 45.2
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 2.9e-09 65.5 35 71.4
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 3.8e-09 65.1 34 73.5
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 3.8e-09 65.1 40 70.0
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 4.9e-09 64.7 86 44.2
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 4.9e-09 64.7 65 49.2
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 6.5e-09 64.3 37 64.9
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 6.5e-09 64.3 81 37.0
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 6.5e-09 64.3 34 76.5
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 6.5e-09 64.3 34 76.5
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 8.4e-09 63.9 56 53.6
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 8.4e-09 63.9 35 74.3
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 8.4e-09 63.9 89 42.7
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 1.1e-08 63.5 51 52.9
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 1.1e-08 63.5 107 35.5
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 1.1e-08 63.5 51 54.9
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.4e-08 63.2 33 72.7
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 1.4e-08 63.2 107 35.5
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 1.4e-08 63.2 39 69.2
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 1.9e-08 62.8 79 38.0
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 1.9e-08 62.8 96 41.7
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 1.9e-08 62.8 35 71.4
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 2.5e-08 62.4 88 43.2
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 2.5e-08 62.4 39 66.7
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 3.2e-08 62.0 39 69.2
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 3.2e-08 62.0 38 68.4
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 3.2e-08 62.0 39 59.0
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 4.2e-08 61.6 54 48.1
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 4.2e-08 61.6 38 65.8
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 4.2e-08 61.6 89 41.6
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 4.2e-08 61.6 35 71.4
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 5.5e-08 61.2 41 65.9
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 5.5e-08 61.2 87 37.9
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 7.1e-08 60.8 47 51.1
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 7.1e-08 60.8 47 51.1
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 7.1e-08 60.8 47 51.1
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 7.1e-08 60.8 47 51.1
Pp3c19_6810 Physcomitrium patens HOM05D023101 ORTHO05D005760 7.1e-08 60.8 81 38.3
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 7.1e-08 60.8 42 59.5
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 7.1e-08 60.8 39 66.7
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 9.3e-08 60.5 54 48.1
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 9.3e-08 60.5 33 75.8
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 9.3e-08 60.5 84 41.7
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 1.2e-07 60.1 47 53.2
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 1.2e-07 60.1 79 39.2
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 1.2e-07 60.1 35 60.0
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 1.6e-07 59.7 89 38.2
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 1.6e-07 59.7 89 38.2
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 1.6e-07 59.7 89 38.2
SEGI_01582 Sequoiadendron giganteum HOM05D055431 ORTHO05D005760 1.6e-07 59.7 84 35.7
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 1.6e-07 59.7 60 46.7
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 2.1e-07 59.3 35 62.9
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 2.7e-07 58.9 106 34.0
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 3.5e-07 58.5 79 38.0
Pp3c15_15470 Physcomitrium patens HOM05D023101 ORTHO05D005760 3.5e-07 58.5 48 54.2
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 4.6e-07 58.2 47 48.9
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 4.6e-07 58.2 47 48.9
AagrBONN_evm.TU.Sc2ySwM_228.2768 Anthoceros agrestis HOM05D005200 ORTHO05D005760 1.0e-06 57.0 35 62.9
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 1.0e-06 57.0 47 53.2
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 1.0e-06 57.0 33 66.7
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 1.0e-06 57.0 39 61.5
Zm00001eb203790 Zea mays HOM05D005200 ORTHO05D005760 1.0e-06 57.0 58 48.3
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 1.3e-06 56.6 32 65.6
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 1.3e-06 56.6 37 59.5
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 1.8e-06 56.2 48 47.9
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 1.8e-06 56.2 32 65.6
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 2.3e-06 55.8 79 38.0
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 2.3e-06 55.8 32 68.8
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 3.0e-06 55.5 91 38.5
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 3.0e-06 55.5 71 46.5
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 3.9e-06 55.1 39 64.1
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 5.1e-06 54.7 32 65.6
MELO3C022697.2 Cucumis melo HOM05D005200 ORTHO05D005760 5.1e-06 54.7 70 44.3
Pp3c22_2900 Physcomitrium patens HOM05D023101 ORTHO05D005760 5.1e-06 54.7 72 33.3
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 6.7e-06 54.3 32 62.5
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 8.7e-06 53.9 35 60.0


User provided reference genes

Program Settings