Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 0.0e+00 1393.3 697 100.0
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 3.2e-298 1028.1 777 69.2
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 1.0e-288 996.5 773 66.6
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 1.4e-282 976.1 774 65.4
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 4.2e-282 974.5 774 64.1
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 8.1e-278 960.3 777 64.6
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.8e-277 959.1 777 64.6
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 8.4e-275 950.3 771 63.9
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 8.4e-275 950.3 772 64.1
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 3.2e-274 948.3 773 63.9
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 5.4e-274 947.6 773 64.0
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 2.1e-273 945.7 773 63.9
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 1.3e-272 943.0 775 63.9
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 5.1e-272 941.0 760 65.5
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 5.1e-272 941.0 799 62.2
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 1.5e-271 939.5 773 63.3
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 8.1e-270 933.7 786 62.2
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 9.9e-268 926.8 775 62.7
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 5.6e-263 911.0 765 62.4
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.1e-261 906.7 776 60.8
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.0e-260 902.5 697 65.4
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 2.2e-259 899.0 769 61.2
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 7.9e-257 890.6 769 59.9
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.3e-256 889.8 776 60.1
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 3.9e-256 888.3 768 60.0
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 5.1e-256 887.9 763 59.8
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 2.8e-254 882.1 766 59.5
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 3.7e-254 881.7 765 59.9
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 6.3e-254 880.9 768 58.7
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 2.4e-253 879.0 775 59.6
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 5.3e-253 877.9 766 59.4
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 2.9e-251 872.1 766 59.5
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.9e-251 872.1 789 59.3
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 6.5e-251 870.9 777 59.3
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 1.4e-250 869.8 773 59.6
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 5.5e-250 867.8 768 59.5
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 9.3e-250 867.1 762 59.2
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 3.6e-249 865.1 765 59.2
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 1.0e-248 863.6 766 59.1
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 3.0e-248 862.1 774 58.8
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 3.9e-248 861.7 775 58.6
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 5.1e-248 861.3 764 59.6
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 5.1e-248 861.3 779 58.8
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 5.1e-248 861.3 779 58.8
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 8.7e-248 860.5 762 59.7
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.3e-247 858.2 779 58.7
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 7.4e-247 857.4 754 61.7
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 9.7e-247 857.1 778 58.1
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 1.6e-246 856.3 764 58.9
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 6.3e-246 854.4 776 57.5
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.4e-245 852.4 766 58.0
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.2e-244 850.1 764 59.9
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 1.5e-244 849.7 769 58.4
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.5e-244 849.7 764 58.9
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.5e-244 849.7 764 59.2
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 1.5e-244 849.7 777 58.7
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 5.9e-244 847.8 777 58.2
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 5.9e-244 847.8 776 57.3
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.3e-243 846.7 780 57.7
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 5.0e-243 844.7 779 57.3
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.1e-242 843.6 764 57.7
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.4e-242 843.2 763 59.6
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 3.2e-242 842.0 753 57.1
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.6e-241 839.7 766 57.0
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 2.1e-241 839.3 775 57.0
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 2.7e-241 839.0 764 58.6
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 7.9e-241 837.4 775 56.6
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 3.0e-240 835.5 773 58.2
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 1.5e-239 833.2 775 55.9
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 2.6e-239 832.4 773 59.5
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 4.3e-239 831.6 763 58.5
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 4.8e-238 828.2 776 55.8
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.1e-237 827.0 777 56.2
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.1e-237 825.5 763 58.3
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 3.1e-237 825.5 766 56.1
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.5e-236 823.2 762 57.6
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 4.5e-236 821.6 776 57.1
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 2.1e-233 812.8 767 57.1
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 2.1e-233 812.8 774 57.1
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.6e-233 812.0 763 55.0
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 3.6e-233 812.0 774 55.4
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 1.8e-232 809.7 767 56.6
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 2.3e-232 809.3 746 55.0
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.1e-231 807.0 768 56.6
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.5e-231 806.6 678 62.4
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 2.0e-231 806.2 766 56.1
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 3.3e-231 805.4 777 56.2
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.4e-231 805.1 815 52.0
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.3e-230 803.5 764 57.7
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 1.7e-230 803.1 775 54.8
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 3.1e-229 798.9 774 55.2
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 4.1e-229 798.5 755 55.6
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 1.2e-228 797.0 768 55.5
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.6e-228 796.6 764 55.2
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 5.0e-227 791.6 762 56.2
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 1.9e-226 789.6 653 65.2
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 2.5e-226 789.3 764 54.8
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 5.5e-226 788.1 766 55.1
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.2e-225 786.9 763 55.2
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 1.6e-225 786.6 764 54.8
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 4.7e-225 785.0 763 54.8
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 6.7e-224 781.2 781 53.9
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.1e-223 780.4 775 53.4
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 5.7e-223 778.1 776 53.4
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 5.7e-223 778.1 763 54.3
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 1.3e-222 776.9 806 52.9
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 2.2e-222 776.2 765 54.4
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.2e-222 776.2 764 55.2
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 3.7e-222 775.4 765 53.9
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 1.4e-221 773.5 767 54.0
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 2.4e-221 772.7 770 54.4
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 3.1e-221 772.3 766 54.3
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 7.0e-221 771.2 763 53.5
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 2.7e-220 769.2 807 52.9
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 2.7e-220 769.2 777 53.4
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.3e-219 766.9 696 57.9
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.1e-218 763.8 778 53.1
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.9e-218 763.1 773 54.7
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 3.6e-217 758.8 769 53.3
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 2.3e-216 756.1 779 52.5
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 8.8e-216 754.2 761 54.9
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 2.0e-215 753.1 780 52.2
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.3e-214 750.4 776 52.4
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.7e-214 750.0 675 58.7
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 1.8e-213 746.5 746 53.8
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 7.2e-210 734.6 775 52.6
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 3.4e-207 725.7 780 51.7
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 2.4e-205 719.5 713 56.5
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 4.1e-205 718.8 769 51.5
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 7.0e-205 718.0 775 51.6
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.2e-204 717.2 765 50.1
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 5.6e-202 708.4 668 57.0
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.6e-201 705.7 775 50.8
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.2e-199 700.7 732 52.9
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.9e-189 666.8 768 49.6
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 3.2e-189 666.0 768 49.6
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.0e-187 661.0 761 49.5
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.8e-176 623.6 679 49.3
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 6.2e-153 545.4 419 64.9
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 3.2e-141 506.5 771 39.3
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.2e-135 488.0 764 40.6
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.4e-128 464.5 751 39.1
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 4.6e-124 449.5 724 37.6
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.4e-123 448.0 791 35.7
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.5e-122 444.5 783 36.8
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.8e-120 437.6 472 52.8
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.0e-119 434.1 433 53.3
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.2e-111 408.3 451 48.8
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.9e-110 403.7 421 53.2
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 7.5e-106 389.0 778 33.3
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 5.5e-101 372.9 388 52.1
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.2e-100 371.7 388 51.8
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 9.5e-93 345.5 480 42.7
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.8e-83 314.7 723 31.5
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 4.1e-80 303.5 268 57.8
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 7.5e-74 282.7 276 54.0
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.7e-73 281.6 287 53.3
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 6.6e-62 243.0 257 52.5
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 2.0e-58 231.5 185 61.6
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 3.4e-42 177.6 142 63.4
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 4.9e-41 173.7 679 27.1
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.8e-33 147.5 149 55.7
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.2e-26 125.9 172 39.5
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.3e-22 112.5 142 41.5
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 1.9e-16 92.0 74 60.8
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 3.4e-10 71.2 69 53.6
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 5.1e-06 57.4 80 40.0


User provided reference genes

Program Settings