Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 0.0e+00 1654.4 925 100.0
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 3.7e-297 1025.0 1029 62.2
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 2.7e-292 1008.8 1047 61.0
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 5.0e-262 908.3 1000 59.0
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 5.6e-261 904.8 1026 55.4
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 5.2e-259 898.3 1026 55.1
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 9.8e-258 894.0 995 57.1
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 9.5e-253 877.5 1011 55.3
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 1.2e-252 877.1 1042 54.2
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 8.1e-252 874.4 1015 55.1
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 4.0e-251 872.1 1051 53.3
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 8.3e-249 864.4 990 55.8
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 1.9e-248 863.2 1058 52.7
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 2.1e-247 859.8 1005 54.3
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 7.8e-247 857.8 1014 54.7
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 1.0e-246 857.4 1001 56.0
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 3.0e-246 855.9 1023 53.9
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 1.9e-245 853.2 1019 54.2
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.5e-245 852.8 1006 56.6
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 9.5e-245 850.9 1050 54.7
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 1.6e-244 850.1 1011 53.2
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 1.1e-243 847.4 1009 54.3
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 4.0e-243 845.5 1018 54.5
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 5.2e-243 845.1 1011 52.4
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 5.2e-243 845.1 1030 53.4
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 8.9e-243 844.3 1023 53.3
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.6e-242 842.8 987 54.2
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.3e-241 840.5 910 57.6
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 1.7e-241 840.1 911 56.9
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 2.9e-241 839.3 1018 54.6
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 6.4e-241 838.2 1030 52.1
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 8.4e-241 837.8 1050 53.3
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 4.1e-240 835.5 1000 55.4
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 7.1e-240 834.7 999 54.0
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 9.2e-240 834.3 1010 54.0
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 1.2e-239 833.9 1045 52.6
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 2.1e-239 833.2 1007 52.9
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 6.0e-239 831.6 1073 50.9
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 6.0e-239 831.6 1027 53.5
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 1.3e-238 830.5 977 54.2
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 2.3e-238 829.7 1033 55.1
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 4.3e-237 825.5 972 55.2
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 4.3e-237 825.5 1031 53.6
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 5.6e-237 825.1 1031 53.6
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 2.1e-236 823.2 1010 54.2
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 3.6e-236 822.4 1036 53.4
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 6.2e-236 821.6 1022 52.7
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 8.9e-235 817.8 846 57.7
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 1.3e-233 813.9 1053 50.8
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 1.7e-233 813.5 1021 53.1
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.2e-233 813.1 1036 51.6
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 2.1e-231 806.6 1017 51.6
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 1.0e-230 804.3 1083 49.5
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 1.0e-230 804.3 1011 52.2
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.9e-229 800.0 1005 51.9
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.3e-229 799.3 1022 51.8
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 1.3e-228 797.3 1033 51.5
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 3.6e-228 795.8 895 55.5
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 6.2e-228 795.0 1049 51.5
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 6.2e-228 795.0 1027 52.2
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 9.0e-227 791.2 953 52.8
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 1.2e-226 790.8 862 56.1
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 1.2e-226 790.8 997 52.8
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 2.6e-226 789.6 1049 51.0
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 6.4e-225 785.0 997 53.5
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.4e-224 783.9 1014 51.7
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 3.5e-223 779.2 1018 50.3
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 4.6e-223 778.9 1056 50.1
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 1.0e-222 777.7 1030 52.1
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.3e-222 777.3 1007 53.1
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 1.1e-221 774.2 1057 49.0
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.1e-221 774.2 1028 52.5
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.8e-219 766.9 914 52.3
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 4.0e-219 765.8 1033 52.0
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 2.6e-218 763.1 1159 46.5
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 3.4e-218 762.7 1024 48.8
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 4.9e-217 758.8 904 53.1
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.4e-216 757.3 863 54.3
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.0e-214 751.1 1018 50.3
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.3e-214 750.7 1063 49.2
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 3.9e-214 749.2 927 51.0
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 3.9e-214 749.2 1016 50.1
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 3.9e-214 749.2 1031 50.2
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 5.6e-213 745.3 1026 49.6
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.8e-212 743.0 997 48.8
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 2.6e-210 736.5 1018 49.0
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 3.8e-209 732.6 1011 49.2
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 3.8e-209 732.6 923 51.0
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 6.3e-204 715.3 1017 48.4
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 1.8e-203 713.8 1041 49.2
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.0e-201 708.0 932 49.8
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 7.2e-200 701.8 1038 47.4
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.9e-198 696.0 863 52.5
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 1.1e-197 694.5 1055 50.2
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 3.1e-195 686.4 846 51.3
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 4.2e-192 676.0 873 53.4
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 6.7e-190 668.7 994 45.5
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 8.8e-190 668.3 788 56.0
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 9.7e-189 664.8 684 59.8
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 6.9e-187 658.7 1020 45.5
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.3e-177 627.9 1042 45.2
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 4.4e-165 586.3 621 56.4
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 8.8e-158 562.0 666 54.2
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 1.9e-152 544.3 588 55.1
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 1.5e-149 534.6 572 58.7
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 7.0e-147 525.8 594 54.9
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 2.0e-141 507.7 929 39.6
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 2.4e-139 500.7 975 38.4
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 8.6e-137 492.3 835 42.4
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 5.6e-136 489.6 916 39.1
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.2e-133 481.9 586 50.2
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.7e-130 470.7 837 41.6
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 2.2e-124 451.1 358 70.1
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 8.9e-118 429.1 797 37.8
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 1.6e-114 418.3 561 49.7
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 1.3e-111 408.7 959 33.5
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 4.6e-106 390.2 491 52.1
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 1.5e-72 278.9 418 43.1
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 1.2e-66 259.2 1058 29.2
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 9.7e-64 249.6 574 34.1
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.6e-61 241.5 361 44.9
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.3e-57 228.4 248 55.2
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 9.7e-56 223.0 622 33.6
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 1.2e-53 216.1 269 54.6
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 6.8e-49 200.3 231 54.1
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 1.3e-47 196.1 169 66.9
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 1.7e-47 195.7 251 54.6
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.8e-47 194.9 737 27.4
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 7.0e-38 163.7 128 71.9
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 1.2e-32 146.4 155 58.7
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 7.5e-32 143.7 161 55.9
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 2.3e-25 122.1 150 54.7
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 3.7e-23 114.8 208 46.6
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 9.2e-22 110.2 90 60.0
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.5e-16 92.8 51 84.3
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 7.5e-16 90.5 195 40.5
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.7e-15 89.4 65 70.8
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 1.7e-15 89.4 57 71.9
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.2e-13 83.2 206 40.3
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 3.0e-12 78.6 84 54.8
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 1.7e-07 62.8 45 60.0
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 1.7e-07 62.8 39 71.8
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 1.7e-07 62.8 39 71.8
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 2.2e-07 62.4 39 71.8
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 2.2e-07 62.4 39 71.8
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 3.2e-06 58.5 38 68.4
Zm00001eb363000 Zea mays HOM05D001561 ORTHO05D002967 5.4e-06 57.8 35 65.7


User provided reference genes

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