Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23902 Striga asiatica HOM05D006122 ORTHO05D007426 4.2e-144 514.6 246 100.0
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 8.7e-110 400.6 246 79.3
Ciclev10026416m.g Citrus clementina HOM05D006122 ORTHO05D007426 2.2e-108 396.0 242 76.9
Migut.I01117 Erythranthe guttata HOM05D006122 ORTHO05D007426 4.8e-108 394.8 242 77.7
CSS0025263 Camellia sinensis var. sinensis HOM05D006122 ORTHO05D007426 3.1e-107 392.1 242 76.9
Cfa003494 Carpinus fangiana HOM05D006122 ORTHO05D007426 4.1e-107 391.7 242 77.3
PGR102G1167 Punica granatum HOM05D006122 ORTHO05D007426 4.1e-107 391.7 242 76.0
CiPaw.02G133000 Carya illinoinensis HOM05D006122 ORTHO05D007426 6.9e-107 391.0 242 77.7
Actinidia26007 Actinidia chinensis HOM05D006122 ORTHO05D007426 9.0e-107 390.6 242 77.3
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 1.5e-106 389.8 242 76.0
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 2.6e-106 389.0 242 76.9
TAR383G0669 Trochodendron aralioides HOM05D006122 ORTHO05D007426 2.6e-106 389.0 242 76.0
Hma1.2p1_0229F.1_g096920 Hydrangea macrophylla HOM05D006122 ORTHO05D007426 1.0e-105 387.1 242 75.6
COL.COLO4_30828 Corchorus olitorius HOM05D006122 ORTHO05D007426 5.0e-105 384.8 242 74.8
Thecc.06G126900 Theobroma cacao HOM05D006122 ORTHO05D007426 5.0e-105 384.8 242 75.6
Peaxi162Scf01003g00013 Petunia axillaris HOM05D006122 ORTHO05D007426 6.5e-105 384.4 243 74.5
Manes.11G015100 Manihot esculenta HOM05D006122 ORTHO05D007426 5.5e-104 381.3 242 75.6
DCAR_022657 Daucus carota HOM05D006122 ORTHO05D007426 7.2e-104 380.9 242 75.6
Solyc11g005060.2 Solanum lycopersicum HOM05D006122 ORTHO05D007426 9.4e-104 380.6 243 73.7
Cc04_g00910 Coffea canephora HOM05D006122 ORTHO05D007426 2.1e-103 379.4 242 73.1
Gohir.A05G138000 Gossypium hirsutum HOM05D006122 ORTHO05D007426 2.7e-103 379.0 242 72.3
Gorai.009G144400 Gossypium raimondii HOM05D006122 ORTHO05D007426 2.7e-103 379.0 242 72.3
vmacro22018 Vaccinium macrocarpon HOM05D006122 ORTHO05D007426 1.0e-102 377.1 254 72.0
Gohir.D05G140100 Gossypium hirsutum HOM05D006122 ORTHO05D007426 3.0e-102 375.6 242 71.9
Prupe.3G035300 Prunus persica HOM05D006122 ORTHO05D007426 1.5e-101 373.2 242 73.1
QL05p002004 Quercus lobata HOM05D006122 ORTHO05D007426 1.5e-101 373.2 242 74.4
Duzib235G1006 Durio zibethinus HOM05D006122 ORTHO05D007426 2.0e-101 372.9 242 72.3
GSVIVG01016699001 Vitis vinifera HOM05D006122 ORTHO05D007426 2.5e-101 372.5 242 71.5
TWI59G0171 Tripterygium wilfordii HOM05D006122 ORTHO05D007426 4.3e-101 371.7 244 70.9
Rhsim12G0212300 Rhododendron simsii HOM05D006122 ORTHO05D007426 7.4e-101 370.9 291 63.9
Sopen11g001060 Solanum pennellii HOM05D006122 ORTHO05D007426 7.4e-101 370.9 257 69.6
Aqoxy3G03460 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 2.8e-100 369.0 242 71.9
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 2.8e-100 369.0 240 72.1
MD17G1150700 Malus domestica HOM05D006122 ORTHO05D007426 3.7e-100 368.6 242 71.9
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 3.7e-100 368.6 243 71.6
Potri.010G076600 Populus trichocarpa HOM05D006122 ORTHO05D007426 6.3e-100 367.9 242 71.5
CANSAT56G0704 Cannabis sativa HOM05D006122 ORTHO05D007426 1.1e-99 367.1 242 69.4
CAN.G1227.1 Capsicum annuum HOM05D006122 ORTHO05D007426 1.1e-99 367.1 244 71.3
Sed0027026 Sechium edule HOM05D006122 ORTHO05D007426 1.1e-99 367.1 242 70.7
Os01g0727400 Oryza sativa ssp. japonica HOM05D006122 ORTHO05D007426 1.4e-99 366.7 242 71.1
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 3.1e-99 365.5 242 72.7
AL1G29610 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 6.9e-99 364.4 243 71.2
Carub.0001s1711 Capsella rubella HOM05D006122 ORTHO05D007426 6.9e-99 364.4 243 71.6
MD09G1176300 Malus domestica HOM05D006122 ORTHO05D007426 6.9e-99 364.4 242 70.7
ECA238G0672 Erigeron canadensis HOM05D006122 ORTHO05D007426 9.1e-99 364.0 242 70.7
Thhalv10008577m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 9.1e-99 364.0 243 71.2
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 9.1e-99 364.0 242 71.1
HanXRQChr09g0277171 Helianthus annuus HOM05D006122 ORTHO05D007426 1.2e-98 363.6 242 70.2
AUR62018816 Chenopodium quinoa HOM05D006122 ORTHO05D007426 1.5e-98 363.2 251 68.9
Sp1g15490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 1.5e-98 363.2 243 70.8
SpUn0033_0060 Schrenkiella parvula HOM05D006122 ORTHO05D007426 1.5e-98 363.2 243 70.8
unitig_32.g10995 Utricularia gibba HOM05D006122 ORTHO05D007426 2.0e-98 362.8 242 69.8
AT1G17350 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 3.4e-98 362.1 243 70.4
CARHR017950 Cardamine hirsuta HOM05D006122 ORTHO05D007426 3.4e-98 362.1 243 70.8
FvH4_6g35380 Fragaria vesca HOM05D006122 ORTHO05D007426 5.9e-98 361.3 242 71.5
Hund14473 Selenicereus undatus HOM05D006122 ORTHO05D007426 1.3e-97 360.1 267 66.3
Nitab4.5_0001168g0090 Nicotiana tabacum HOM05D006122 ORTHO05D007426 3.8e-97 358.6 225 73.3
A06p13310 Brassica napus HOM05D006122 ORTHO05D007426 1.1e-96 357.1 250 68.8
BcaNung07320 Brassica carinata HOM05D006122 ORTHO05D007426 1.4e-96 356.7 243 70.4
Carub.0002s1927 Capsella rubella HOM05D006122 ORTHO05D007426 3.2e-96 355.5 244 70.1
Zm00001eb361800 Zea mays HOM05D006122 ORTHO05D007426 5.5e-96 354.8 243 70.0
BraA06t24484Z Brassica rapa HOM05D006122 ORTHO05D007426 7.2e-96 354.4 248 69.4
Phvul.010G126800 Phaseolus vulgaris HOM05D006122 ORTHO05D007426 7.2e-96 354.4 243 71.2
Sp5g27490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 2.1e-95 352.8 244 69.3
Lj3g0011237 Lotus japonicus HOM05D006122 ORTHO05D007426 3.6e-95 352.1 242 68.2
C05p15780 Brassica napus HOM05D006122 ORTHO05D007426 6.1e-95 351.3 250 68.4
BolC5t30283H Brassica oleracea HOM05D006122 ORTHO05D007426 6.1e-95 351.3 250 68.4
Lalb_Chr10g0101271 Lupinus albus HOM05D006122 ORTHO05D007426 6.1e-95 351.3 242 67.8
VMungo0331G0398 Vigna mungo HOM05D006122 ORTHO05D007426 7.9e-95 350.9 243 69.5
Psat4g219480 Pisum sativum HOM05D006122 ORTHO05D007426 1.0e-94 350.5 242 66.5
CsaV3_4G002610 Cucumis sativus L. HOM05D006122 ORTHO05D007426 1.4e-94 350.1 242 66.5
Glyma.07G043200 Glycine max HOM05D006122 ORTHO05D007426 1.4e-94 350.1 242 67.8
Glyma.16G011600 Glycine max HOM05D006122 ORTHO05D007426 1.8e-94 349.7 242 67.8
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 2.3e-94 349.4 246 67.1
AT1G72420 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 3.0e-94 349.0 244 68.4
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 5.1e-94 348.2 242 66.9
Lj5A31T62 Lonicera japonica HOM05D006122 ORTHO05D007426 5.1e-94 348.2 232 71.1
EL10Ac5g12242 Beta vulgaris HOM05D006122 ORTHO05D007426 6.7e-94 347.8 240 69.6
Medtr8g022330 Medicago truncatula HOM05D006122 ORTHO05D007426 8.8e-94 347.4 242 66.1
Thhalv10019098m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 1.5e-93 346.7 244 69.3
THA.LOC104812266 Tarenaya hassleriana HOM05D006122 ORTHO05D007426 3.3e-93 345.5 242 67.8
CARHR065320 Cardamine hirsuta HOM05D006122 ORTHO05D007426 1.4e-91 340.1 244 66.8
Ca_23414_v3 Cicer arietinum L. HOM05D006122 ORTHO05D007426 5.3e-91 338.2 231 67.5
MELO3C017781.2 Cucumis melo HOM05D006122 ORTHO05D007426 2.6e-90 335.9 225 69.3
Ah.07g199940 Amaranthus hybridus HOM05D006122 ORTHO05D007426 1.7e-89 333.2 228 69.3
Lsat_1_v5_gn_8_4120 Lactuca sativa HOM05D006122 ORTHO05D007426 1.5e-88 330.1 242 65.3
arahy.Tifrunner.gnm1.ann1.JC3XNH Arachis hypogaea HOM05D006122 ORTHO05D007426 1.6e-87 326.6 244 62.7
arahy.Tifrunner.gnm1.ann1.DIA1Z1 Arachis hypogaea HOM05D006122 ORTHO05D007426 4.7e-87 325.1 244 62.3
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 4.7e-87 325.1 229 66.4
CDE02G1839 Ceratophyllum demersum HOM05D006122 ORTHO05D007426 1.2e-82 310.5 242 61.6
Oeu000384.1 Olea europaea HOM05D006122 ORTHO05D007426 6.5e-81 304.7 246 63.8
Aa31LG4G2750 Aethionema arabicum HOM05D006122 ORTHO05D007426 1.5e-77 293.5 232 63.8
A07p38600 Brassica napus HOM05D006122 ORTHO05D007426 4.5e-74 282.0 249 59.8
MBI13_g36947_MAGBIO Magnolia biondii HOM05D006122 ORTHO05D007426 2.9e-73 279.3 182 74.2
BraA07t31418Z Brassica rapa HOM05D006122 ORTHO05D007426 1.9e-72 276.6 271 56.1
BolC6t39721H Brassica oleracea HOM05D006122 ORTHO05D007426 2.7e-71 272.7 255 56.5
AUR62007187 Chenopodium quinoa HOM05D006122 ORTHO05D007426 2.3e-70 269.6 278 52.2
C06p46770 Brassica napus HOM05D006122 ORTHO05D007426 4.0e-70 268.9 249 58.6
Haze_16093 Corylus avellana HOM05D006122 ORTHO05D007426 5.2e-70 268.5 279 53.0
Haze_16097 Corylus avellana HOM05D006122 ORTHO05D007426 5.2e-70 268.5 279 53.0
Duzib160G0673 Durio zibethinus HOM05D006122 ORTHO05D007426 1.7e-68 263.5 194 64.9
Sc01g0007910 Simmondsia chinensis HOM05D006122 ORTHO05D007426 2.7e-66 256.1 176 70.5
AL2G32090 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 2.1e-63 246.5 139 77.7
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 4.7e-63 245.4 187 62.0
Aqoxy301s003 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 2.0e-61 240.0 175 66.9
Nn1g04517 Nelumbo nucifera HOM05D006122 ORTHO05D007426 2.0e-61 240.0 242 53.3
Nn4g23234 Nelumbo nucifera HOM05D006122 ORTHO05D007426 6.4e-60 235.0 133 80.5
Pp3c3_21840 Physcomitrium patens HOM05D006122 ORTHO05D007426 1.6e-58 230.3 238 45.8
FAN09G0799 Fragaria x ananassa HOM05D006122 ORTHO05D007426 1.0e-57 227.6 174 64.4
Cpa.g.sc25.169 Carica papaya HOM05D006122 ORTHO05D007426 1.3e-57 227.3 242 51.7
BcaB03g14991 Brassica carinata HOM05D006122 ORTHO05D007426 6.6e-57 224.9 140 72.1
Mapoly0158s0026 Marchantia polymorpha HOM05D006122 ORTHO05D007426 3.6e-55 219.2 242 43.8
FAN14G0976 Fragaria x ananassa HOM05D006122 ORTHO05D007426 6.2e-55 218.4 242 50.4
SalBow5G3255 Salvia bowleyana HOM05D006122 ORTHO05D007426 2.6e-53 213.0 246 50.8
SHI23560 Sapria himalayana HOM05D006122 ORTHO05D007426 1.2e-50 204.1 119 77.3
CBR_g33997 Chara braunii HOM05D006122 ORTHO05D007426 3.9e-49 199.1 232 39.7
SalBow5G2173 Salvia bowleyana HOM05D006122 ORTHO05D007426 4.3e-48 195.7 164 61.6
SEGI_37442 Sequoiadendron giganteum HOM05D006122 ORTHO05D007426 7.3e-40 168.3 93 79.6
AagrBONN_evm.TU.Sc2ySwM_362.2335 Anthoceros agrestis HOM05D006122 ORTHO05D007426 1.0e-33 147.9 213 39.9
SMO165G0005 Selaginella moellendorffii HOM05D006122 ORTHO05D007426 7.6e-29 131.7 215 30.7
MCO13G567 Micromonas commoda HOM05D006122 ORTHO05D007426 2.4e-27 126.7 274 31.4
BcaB03g14993 Brassica carinata HOM05D006122 ORTHO05D007426 3.0e-25 119.8 74 74.3
TPR.G16651 Trifolium pratense HOM05D006122 ORTHO05D007426 1.6e-23 114.0 67 74.6
Nn1g08880 Nelumbo nucifera HOM05D006122 ORTHO05D007426 4.0e-22 109.4 55 87.3
CAN.G526.12 Capsicum annuum HOM05D006122 ORTHO05D007426 2.6e-21 106.7 168 39.3
Actinidia31156 Actinidia chinensis HOM05D006122 ORTHO05D007426 1.9e-19 100.5 116 48.3
Actinidia31157 Actinidia chinensis HOM05D006122 ORTHO05D007426 7.6e-13 78.6 49 71.4
Cre02.g076750 Chlamydomonas reinhardtii HOM05D006122 ORTHO05D007426 3.2e-11 73.2 240 24.2
Hma1.2p1_2416F.1_g321740 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 2.8e-07 60.1 185 22.7
PRCOL_00002435 Prasinoderma coloniale HOM05D005310 ORTHO05D006920 2.8e-07 60.1 129 25.6
PGSC0003DMG400028420 Solanum tuberosum HOM05D005310 ORTHO05D006920 4.8e-07 59.3 134 27.6
SMO119G0157 Selaginella moellendorffii HOM05D005310 ORTHO05D006920 6.2e-07 58.9 133 26.3
SEGI_40960 Sequoiadendron giganteum HOM05D005310 ORTHO05D006920 1.1e-06 58.2 133 25.6
Solyc02g072160.4 Solanum lycopersicum HOM05D005310 ORTHO05D006920 1.1e-06 58.2 134 27.6
ECA248G0338 Erigeron canadensis HOM05D005310 ORTHO05D006920 1.4e-06 57.8 103 30.1
Sopen02g021140 Solanum pennellii HOM05D005310 ORTHO05D006920 1.4e-06 57.8 134 27.6
C01p12850 Brassica napus HOM05D005310 ORTHO05D006920 3.1e-06 56.6 153 29.4
BolC1t01261H Brassica oleracea HOM05D005310 ORTHO05D006920 3.1e-06 56.6 153 29.4
A01p10840 Brassica napus HOM05D005310 ORTHO05D006920 4.0e-06 56.2 153 29.4
BraA01t01031Z Brassica rapa HOM05D005310 ORTHO05D006920 4.0e-06 56.2 153 29.4
HanXRQChr11g0343901 Helianthus annuus HOM05D005310 ORTHO05D006920 6.9e-06 55.5 103 29.1
MBI02_g29873_MAGBIO Magnolia biondii HOM05D000747 ORTHO05D015226 9.0e-06 55.1 28 82.1


User provided reference genes

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