Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 2066.2 1055 100.0
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1613.6 992 82.1
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1512.3 993 76.0
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1510.0 1038 73.3
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1505.7 993 75.3
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1503.4 993 75.3
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1502.3 992 75.1
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1501.9 981 77.3
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1501.9 981 77.3
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1472.2 993 75.4
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1471.4 972 77.1
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1467.2 992 75.9
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1463.7 998 73.9
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1459.9 1077 69.5
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1458.4 992 75.1
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1454.1 993 74.4
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1447.2 992 72.6
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1441.8 964 75.8
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1441.8 993 73.8
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1439.5 995 73.0
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1436.0 992 73.1
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1431.0 1017 72.6
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1430.2 994 73.0
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1428.7 992 72.9
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1425.6 992 71.9
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1425.6 992 72.6
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1418.7 992 71.7
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1407.5 992 71.4
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1407.1 971 73.4
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1405.6 993 71.3
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1402.9 992 71.8
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1402.5 992 71.6
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1402.5 992 71.4
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1402.1 992 70.1
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1401.0 987 71.9
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1400.2 995 70.4
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1398.6 992 70.9
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1398.3 994 71.4
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1398.3 992 72.0
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1396.7 995 71.9
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1395.9 990 70.4
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1391.3 988 71.3
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1391.3 992 71.8
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1390.2 992 70.7
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1388.6 1006 70.7
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1387.1 992 70.5
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1386.3 993 70.6
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1385.5 993 70.7
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1383.2 992 70.0
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1382.1 992 70.2
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1381.3 994 70.8
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1380.9 992 70.0
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1380.5 992 71.1
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1373.6 994 71.3
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1373.2 992 69.5
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1372.1 963 70.9
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1371.3 993 70.2
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1368.2 993 71.0
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1361.7 994 68.9
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1361.3 971 70.2
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1358.6 993 68.6
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1357.0 993 68.8
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1356.3 963 71.8
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1355.9 992 69.0
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1352.8 993 68.1
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1351.7 999 70.0
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1350.9 988 68.6
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1347.8 988 68.1
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1347.8 988 68.6
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1346.6 992 68.4
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1342.4 992 67.3
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1340.9 994 68.7
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1336.2 987 67.0
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1333.9 989 67.6
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1325.1 992 66.9
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1323.9 992 69.2
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1320.1 992 66.2
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1312.0 988 66.3
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1310.0 992 66.8
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1308.5 898 72.4
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1307.4 992 67.7
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1305.8 988 66.2
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1303.9 995 65.8
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1302.0 992 67.0
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1293.1 993 66.2
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1288.9 996 65.8
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1286.2 1004 65.1
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1280.0 1026 64.2
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1278.1 992 66.1
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1275.8 921 69.6
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1271.9 996 66.4
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1270.8 991 65.5
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1268.8 989 65.3
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1268.4 862 75.5
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1268.1 991 65.4
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1261.9 990 65.1
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1256.5 915 70.2
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1255.7 998 64.2
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1234.6 969 65.6
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1222.6 972 62.4
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1172.9 915 67.5
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1150.2 993 58.3
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1113.2 1000 59.8
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 2.7e-293 1012.3 916 59.4
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 5.9e-288 994.6 724 69.5
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 3.2e-286 988.8 994 52.3
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 9.7e-283 977.2 842 61.3
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 4.5e-280 968.4 1003 50.8
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 2.2e-279 966.1 1003 50.9
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 1.1e-273 947.2 1001 49.3
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 2.4e-273 946.0 1004 50.5
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 4.2e-270 935.3 996 48.7
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.1e-262 910.6 612 74.5
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.2e-258 896.3 597 74.9
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 8.6e-247 857.8 986 46.6
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 1.5e-243 847.0 609 69.8
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 2.6e-243 846.3 809 53.4
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 9.8e-243 844.3 743 59.8
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 5.3e-212 742.3 1084 38.4
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 7.1e-201 705.3 913 42.1
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 2.2e-173 614.0 429 72.5
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 3.4e-134 483.8 356 67.4
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 2.4e-132 477.6 304 77.6
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 9.2e-132 475.7 315 73.3
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 4.0e-127 460.3 1203 28.8
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.2e-86 325.9 266 60.9
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.2e-86 325.9 266 60.9
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 4.9e-85 320.5 1077 26.9
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 9.7e-57 226.5 241 48.1
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 3.6e-43 181.4 915 23.2
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 1.7e-32 146.0 109 66.1
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 1.1e-28 133.3 122 59.0
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 1.8e-26 125.9 146 46.6
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 8.3e-24 117.1 145 45.5
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 7.3e-20 104.0 82 59.8
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 7.3e-20 104.0 96 58.3
Pp3c1_21110 Physcomitrium patens HOM05D002636 ORTHO05D003490 9.8e-09 67.0 727 20.2
Pp3c1_21114 Physcomitrium patens HOM05D002636 ORTHO05D003490 9.8e-09 67.0 727 20.2
CBR_g23104 Chara braunii HOM05D002636 ORTHO05D003490 1.6e-06 59.7 941 18.3
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 7.8e-06 57.4 45 66.7
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 7.8e-06 57.4 45 66.7


User provided reference genes

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